Rroxscaffold_6G00397180

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000254
Physical Location & Seq
Reverse (-)
18851919 .. 18852071
153 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00397180.1

Sequence Viewer

Length: 153 bp
ATGGTGGCTGATTGCTTAGCAAAGAGAAGCACAGAGATGGATTTTGGCCTTTTGCATTTGCCAAACCCTCCTATCTTTGTCAACCAGATAGTTCAGGATGACATTGATGGCCTTGTTAGGCCTAGATCTTTTGTAACAGCTATGGCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

50

Amino Acids

5.5

Weight (kDa)

4.82

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
AoxI GGCC 3 cut(s) 46, 109, 119
BccI CCATC 2 cut(s) 31, 101
BfaI CTAG 1 cut(s) 123
BglII AGATCT 1 cut(s) 125
BlpI GCTNAGC 1 cut(s) 16
Bpu1102I GCTNAGC 1 cut(s) 16
BseGI GGATG 1 cut(s) 103
BshFI GGCC 3 cut(s) 48, 111, 121
BsnI GGCC 3 cut(s) 48, 111, 121
Bsp143I GATC 1 cut(s) 125
Bsp1720I GCTNAGC 1 cut(s) 16
BspANI GGCC 3 cut(s) 48, 111, 121
BssMI GATC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 3 cut(s) 48, 111, 121
BtsCI GGATG 1 cut(s) 103
CviJI RGCY 6 cut(s) 8, 48, 111, 121, 140, 146
CviKI_1 RGCY 6 cut(s) 8, 48, 111, 121, 140, 146
DdeI CTNAG 1 cut(s) 16
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
Eco147I AGGCCT 1 cut(s) 121
FaiI YATR 1 cut(s) 143
FokI GGATG 1 cut(s) 110
FspBI CTAG 1 cut(s) 123
HaeIII GGCC 3 cut(s) 48, 111, 121
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 125
LpnPI CCDG 3 cut(s) 80, 98, 132
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MflI RGATCY 1 cut(s) 125
MnlI CCTC 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 1 cut(s) 125
PceI AGGCCT 1 cut(s) 121
PsuI RGATCY 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 35
Sau3AI GATC 1 cut(s) 125
SetI ASST 1 cut(s) 142
SgeI CNNG 4 cut(s) 97, 107, 125, 135
SmiMI CAYNNNNRTG 1 cut(s) 35
SseBI AGGCCT 1 cut(s) 121
SspMI CTAG 1 cut(s) 123
StuI AGGCCT 1 cut(s) 121
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.