Rorug02G0283200

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000254
Physical Location & Seq
Forward (+)
30763410 .. 30765675
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0283200.1

Sequence Viewer

Length: 516 bp
ATGGTGGCCACGGAGAGCCCACCCCAGTGGTCGGAGATCGGTGACGGAGGAGAGAGTCCTCCAGATCCACTTTCTCTCTCCTCCCCTCTCTTTCATGATGGCATCAAATACTCCTCTACACTGCCGGTGATTTCATGGTGGGATCAGATTCAGATGGACCTAGGTTTCGTAGGATATGAATATCCAATGAGGCTTGGCTTGTCTTCAGAGATTTTTTGTTCCGTTATCACTGAATTGGATTCTCATGGGTTTAAAGTTCATGGCAAAGTATCAGAAACCCAAGTTGTGTTCCGGGTAGTGAATAACAAGACTGTCTTCAAAAGAAAGAGGTATGATTCATTGGATTGGAGAAGCTACAAGAGCTTAACTTGTCTTCCAACCTGTTGGAGTGTGTCTGACACCATTGGACTGCTGCAAAATAAGGTTGTAGGTGTCTTTGGCAACAAGCTTGCTGCTCTTCTTGACTCTTATTTGGCAACAAGATCCTCTAGTTTTGTCTTCATATGGTTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

171

Amino Acids

19.23

Weight (kDa)

5.88

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 59, 150, 477
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 319
AleI CACNNNNGTG 1 cut(s) 25
AluBI AGCT 3 cut(s) 354, 363, 448
AluI AGCT 3 cut(s) 354, 363, 448
AlwI GGATC 3 cut(s) 59, 150, 477
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 412, 452
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspA2I CCTAGG 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 2 cut(s) 53, 139
AvaII GGWCC 1 cut(s) 157
AvrII CCTAGG 1 cut(s) 160
BalI TGGCCA 1 cut(s) 8
BanII GRGCYC 1 cut(s) 20
BbsI GAAGAC 4 cut(s) 195, 307, 365, 490
BbvI GCAGC 2 cut(s) 399, 439
BccI CCATC 2 cut(s) 92, 148
BcnI CCSGG 1 cut(s) 293
BfaI CTAG 2 cut(s) 161, 489
BisI GCNGC 2 cut(s) 413, 453
BlnI CCTAGG 1 cut(s) 160
BlsI GCNGC 2 cut(s) 414, 454
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 293
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 19
BpiI GAAGAC 4 cut(s) 195, 307, 365, 490
BpmI CTGGAG 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 9, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 9, 160
BseLI CCNNNNNNNGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 3 cut(s) 63, 70, 103
BseXI GCAGC 2 cut(s) 399, 439
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 125, 292
BslI CCNNNNNNNGG 1 cut(s) 31
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 4 cut(s) 36, 64, 142, 482
BspANI GGCC 1 cut(s) 8
BspHI TCATGA 1 cut(s) 94
BspPI GGATC 3 cut(s) 59, 150, 477
BspQI GCTCTTC 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 9, 160
BssMI GATC 4 cut(s) 36, 64, 142, 482
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 450
BstDSI CCRYGG 1 cut(s) 9
BstKTI GATC 4 cut(s) 39, 67, 145, 485
BstMBI GATC 4 cut(s) 36, 64, 142, 482
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 399, 439
BstV2I GAAGAC 4 cut(s) 195, 307, 365, 490
BstX2I RGATCY 2 cut(s) 64, 482
BstXI CCANNNNNNTGG 2 cut(s) 27, 384
BstYI RGATCY 2 cut(s) 64, 482
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 9
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 3 cut(s) 32, 119, 228
Cac8I GCNNGC 1 cut(s) 450
CciI TCATGA 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 157
CviAII CATG 4 cut(s) 95, 135, 245, 260
CviJI RGCY 7 cut(s) 8, 18, 193, 198, 354, 363, 448
CviKI_1 RGCY 7 cut(s) 8, 18, 193, 198, 354, 363, 448
DpnI GATC 4 cut(s) 38, 66, 144, 484
DpnII GATC 4 cut(s) 36, 64, 142, 482
DraI TTTAAA 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 4 cut(s) 98, 138, 248, 263
FaiI YATR 8 cut(s) 96, 136, 177, 246, 261, 333, 503, 505
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 4 cut(s) 94, 134, 244, 259
FauNDI CATATG 1 cut(s) 503
Fnu4HI GCNGC 2 cut(s) 413, 453
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 413, 453
FspBI CTAG 2 cut(s) 161, 489
GluI GCNGC 2 cut(s) 413, 453
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 125, 292
Hin1II CATG 4 cut(s) 98, 138, 248, 263
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 5 cut(s) 55, 148, 239, 335, 464
HpaII CCGG 2 cut(s) 125, 292
HphI GGTGA 2 cut(s) 53, 139
Hpy188I TCNGA 6 cut(s) 34, 147, 153, 208, 274, 397
Hpy188III TCNNGA 3 cut(s) 62, 95, 461
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
Hsp92II CATG 4 cut(s) 98, 138, 248, 263
Kzo9I GATC 4 cut(s) 36, 64, 142, 482
LguI GCTCTTC 1 cut(s) 462
LpnPI CCDG 5 cut(s) 38, 75, 138, 305, 394
Lsp1109I GCAGC 2 cut(s) 399, 439
LweI GCATC 1 cut(s) 111
MaeI CTAG 2 cut(s) 161, 489
MaeIII GTNAC 1 cut(s) 41
MalI GATC 4 cut(s) 38, 66, 144, 484
MboI GATC 4 cut(s) 36, 64, 142, 482
MboII GAAGA 5 cut(s) 195, 307, 365, 449, 490
MflI RGATCY 2 cut(s) 64, 482
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 1 cut(s) 233
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 2 cut(s) 64, 458
MmeI TCCRAC 3 cut(s) 12, 365, 401
MnlI CCTC 8 cut(s) 41, 69, 91, 96, 124, 183, 321, 496
Mox20I TGGCCA 1 cut(s) 8
MscI TGGCCA 1 cut(s) 8
MseI TTAA 2 cut(s) 252, 365
MslI CAYNNNNRTG 1 cut(s) 25
Msp20I TGGCCA 1 cut(s) 8
MspI CCGG 2 cut(s) 125, 292
MspR9I CCNGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 360
NciI CCSGG 1 cut(s) 293
NdeI CATATG 1 cut(s) 503
NdeII GATC 4 cut(s) 36, 64, 142, 482
NlaIII CATG 4 cut(s) 98, 138, 248, 263
NmuCI GTSAC 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 25
PagI TCATGA 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 462
PfeI GAWTC 3 cut(s) 148, 239, 335
PkrI GCNGC 2 cut(s) 414, 454
PleI GAGTC 2 cut(s) 63, 458
PpsI GAGTC 2 cut(s) 63, 458
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 2 cut(s) 64, 482
RseI CAYNNNNRTG 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 2 cut(s) 252, 365
SatI GCNGC 2 cut(s) 413, 453
Sau3AI GATC 4 cut(s) 36, 64, 142, 482
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 2 cut(s) 64, 458
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 20
SetI ASST 9 cut(s) 162, 166, 332, 356, 365, 383, 426, 433, 450
SfaNI GCATC 1 cut(s) 111
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 25
Sse9I AATT 1 cut(s) 233
SspMI CTAG 2 cut(s) 161, 489
StyD4I CCNGG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 313
TasI AATT 1 cut(s) 233
TfiI GAWTC 3 cut(s) 148, 239, 335
Tru1I TTAA 2 cut(s) 252, 365
Tru9I TTAA 2 cut(s) 252, 365
TscAI CASTG 3 cut(s) 32, 126, 235
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 412, 452
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 6 cut(s) 83, 123, 192, 248, 327, 490
TspGWI ACGGA 3 cut(s) 26, 60, 211
TspRI CASTG 3 cut(s) 32, 126, 235
VpaK11BI GGWCC 1 cut(s) 157
XmaJI CCTAGG 1 cut(s) 160
XspI CTAG 2 cut(s) 161, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.