Rorug02G0370900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000254
Physical Location & Seq
Forward (+)
47331423 .. 47333539
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0370900.1

Sequence Viewer

Length: 462 bp
ATGTTGAAGCTACAAGCTTCTGTCAATTCTGGAGTGGGTTTTTGGGAGAGAAGGGGCTTTTGGATGGCCCGGTTTTGCAGCTTTAACAACTTCAAGATGAGAGCAACCCAGATTTTGTTGTGGAAGTGGTGTCTCTGTTCTTTGATGATTCTGAGAAGCTTCTCAATTATATCACCAGAATGTGGAAGTAATTTGGGATTAATTTGTCAGTACTCATTATATGCTTCCTTGTGCCCTCTGGCTTGGATTTACGGCCAGCAGAGGAATGTCTCGGCTCAGTTGCTGCATCTCTTTTTCCATGACTGCTTCATTGAGAGGATTGGGCAAGTACTCATGCATTGGATACTTGATTCGGAGCCCAGCTCAAGTCTCGGTTCTCTATTCCTTTTTGCTGATACCAATTTACTTTATGCTGATCTCTACTTGTGCAGAGAGCATAATCAAGGTGGAGGATGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.69

Weight (kDa)

7.57

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 253
AfaI GTAC 2 cut(s) 212, 330
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 2 cut(s) 7, 94
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AluBI AGCT 5 cut(s) 10, 17, 81, 159, 363
AluI AGCT 5 cut(s) 10, 17, 81, 159, 363
Alw26I GTCTC 3 cut(s) 137, 274, 374
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 2 cut(s) 66, 253
ApeKI GCWGC 2 cut(s) 78, 283
AseI ATTAAT 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 90, 270
BccI CCATC 2 cut(s) 58, 447
BceAI ACGGC 1 cut(s) 268
BciVI GTATCC 1 cut(s) 336
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 3 cut(s) 137, 274, 374
BfuI GTATCC 1 cut(s) 336
BisI GCNGC 2 cut(s) 79, 284
BlsI GCNGC 2 cut(s) 80, 285
BmcAI AGTACT 2 cut(s) 212, 330
Bme1390I CCNGG 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 295
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 349
BpuMI CCSGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 69, 458
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 2 cut(s) 143, 290
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 2 cut(s) 90, 270
BseYI CCCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 448
BshFI GGCC 2 cut(s) 68, 255
BsiSI CCGG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 3 cut(s) 137, 274, 374
BsnI GGCC 2 cut(s) 68, 255
Bsp1286I GDGCHC 2 cut(s) 236, 360
Bsp143I GATC 1 cut(s) 415
BspANI GGCC 2 cut(s) 68, 255
BspCNI CTCAG 2 cut(s) 144, 289
BspLI GGNNCC 1 cut(s) 357
BssMI GATC 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 152, 276
BstF5I GGATG 2 cut(s) 69, 458
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 3 cut(s) 137, 274, 374
BstMBI GATC 1 cut(s) 415
BstSCI CCNGG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 90, 270
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 2 cut(s) 68, 255
BtsCI GGATG 2 cut(s) 69, 458
Cac8I GCNNGC 1 cut(s) 257
CaiI CAGNNNCTG 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 211, 329
CviAII CATG 2 cut(s) 299, 334
CviQI GTAC 2 cut(s) 211, 329
DdeI CTNAG 2 cut(s) 152, 276
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 2 cut(s) 302, 337
FaiI YATR 7 cut(s) 170, 220, 222, 300, 335, 411, 438
FatI CATG 2 cut(s) 298, 333
Fnu4HI GCNGC 2 cut(s) 79, 284
FokI GGATG 1 cut(s) 76
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 79, 284
GluI GCNGC 2 cut(s) 79, 284
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 2 cut(s) 68, 255
HapII CCGG 1 cut(s) 70
Hin1II CATG 2 cut(s) 302, 337
HindIII AAGCTT 2 cut(s) 15, 157
HinfI GANTC 2 cut(s) 148, 350
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 165
Hpy188I TCNGA 2 cut(s) 153, 355
Hpy188III TCNNGA 2 cut(s) 30, 94
HpyAV CCTTC 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 78, 286, 337, 429
HpyF3I CTNAG 2 cut(s) 152, 276
Hsp92II CATG 2 cut(s) 302, 337
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 7 cut(s) 15, 83, 122, 189, 224, 269, 373
Lsp1109I GCAGC 2 cut(s) 90, 270
LweI GCATC 1 cut(s) 295
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 236, 360
MluCI AATT 5 cut(s) 25, 165, 190, 201, 400
MnlI CCTC 4 cut(s) 246, 255, 309, 443
Mph1103I ATGCAT 1 cut(s) 339
MseI TTAA 2 cut(s) 84, 200
MslI CAYNNNNRTG 1 cut(s) 178
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 70
NciI CCSGG 1 cut(s) 70
NdeII GATC 1 cut(s) 415
NlaIII CATG 2 cut(s) 302, 337
NlaIV GGNNCC 1 cut(s) 357
NmeAIII GCCGAG 1 cut(s) 251
NsiI ATGCAT 1 cut(s) 339
PfeI GAWTC 2 cut(s) 148, 350
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 2 cut(s) 80, 285
PshBI ATTAAT 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 283
RsaI GTAC 2 cut(s) 212, 330
RsaNI GTAC 2 cut(s) 211, 329
RseI CAYNNNNRTG 1 cut(s) 178
SaqAI TTAA 2 cut(s) 84, 200
SatI GCNGC 2 cut(s) 79, 284
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 1 cut(s) 67
ScaI AGTACT 2 cut(s) 212, 330
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 2 cut(s) 236, 360
SetI ASST 6 cut(s) 12, 19, 83, 161, 365, 448
SfaNI GCATC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 5 cut(s) 25, 165, 190, 201, 400
StyD4I CCNGG 1 cut(s) 68
TasI AATT 5 cut(s) 25, 165, 190, 201, 400
TatI WGTACW 2 cut(s) 210, 328
TfiI GAWTC 2 cut(s) 148, 350
Tru1I TTAA 2 cut(s) 84, 200
Tru9I TTAA 2 cut(s) 84, 200
TseI GCWGC 2 cut(s) 78, 283
TspDTI ATGAA 1 cut(s) 298
Van91I CCANNNNNTGG 1 cut(s) 182
VspI ATTAAT 1 cut(s) 200
ZrmI AGTACT 2 cut(s) 212, 330
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.