RchiOBHm_Chr4g0412131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000254
Physical Location & Seq
Forward (+)
35880269 .. 35880633
365 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38287

Sequence Viewer

Length: 327 bp
ATGCGCATCGTGCTCATAGACATCTCACTAATGACCCAAGTTGTATTCACTGCCCTGGTGAGTCTGAGACTCTTCTTCACTTATTTAAAATCTGTCCTAAAGCTTCTACTATATGGAATGAGATTGGTATGCTTGTCACTATGGCTAGAGCCTTTAGACTGGACTGGGATGATTGGATTGCAGCAAATTTGTTGCAGAAGAATTGCACATTCCTTGGTTTTCCATTGTCTCAGCTCTTCATTTATATTTGCTGGTATATTTGGAAATGGCGCAATAAAAGCATCTTTGATACTAATTTTCAGAAACCTCACAACGCTGCTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.24

Weight (kDa)

9.69

Isoelectric Point (pI)

22.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AcsI RAATTY 1 cut(s) 186
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 2 cut(s) 103, 234
AluI AGCT 2 cut(s) 103, 234
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 2 cut(s) 61, 233
ApeKI GCWGC 2 cut(s) 181, 316
ApoI RAATTY 1 cut(s) 186
AspLEI GCGC 2 cut(s) 6, 272
AsuHPI GGTGA 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 193, 303
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 61, 233
BfaI CTAG 1 cut(s) 146
BisI GCNGC 2 cut(s) 182, 317
BlsI GCNGC 2 cut(s) 183, 318
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 15, 290
BmuI ACTGGG 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 54, 213
Bse1I ACTGG 2 cut(s) 164, 169
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 54, 213
BseGI GGATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 56, 244
BseNI ACTGG 2 cut(s) 164, 169
BseXI GCAGC 2 cut(s) 193, 303
BsiHKAI GWGCWC 1 cut(s) 15
BsmAI GTCTC 2 cut(s) 61, 233
Bsp1286I GDGCHC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 57, 243
BspQI GCTCTTC 1 cut(s) 241
BsrI ACTGG 2 cut(s) 164, 169
BssECI CCNNGG 2 cut(s) 54, 213
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 324
Bst6I CTCTTC 2 cut(s) 77, 241
BstDEI CTNAG 2 cut(s) 65, 230
BstF5I GGATG 1 cut(s) 174
BstHHI GCGC 2 cut(s) 6, 272
BstMAI GTCTC 2 cut(s) 61, 233
BstMWI GCNNNNNNNGC 2 cut(s) 10, 278
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 193, 303
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
CfoI GCGC 2 cut(s) 6, 272
CviJI RGCY 4 cut(s) 103, 145, 151, 234
CviKI_1 RGCY 4 cut(s) 103, 145, 151, 234
DdeI CTNAG 2 cut(s) 65, 230
DraI TTTAAA 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 77, 241
EarI CTCTTC 2 cut(s) 77, 241
Eco130I CCWWGG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaiI YATR 7 cut(s) 17, 112, 114, 130, 142, 245, 257
Fnu4HI GCNGC 2 cut(s) 182, 317
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 182, 317
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 1 cut(s) 146
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 271
GluI GCNGC 2 cut(s) 182, 317
HhaI GCGC 2 cut(s) 6, 272
Hin6I GCGC 2 cut(s) 4, 270
HinP1I GCGC 2 cut(s) 4, 270
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 61, 69
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 66, 302
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4V TGCA 3 cut(s) 181, 195, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 278
HpyF3I CTNAG 2 cut(s) 65, 230
HspAI GCGC 2 cut(s) 4, 270
LguI GCTCTTC 1 cut(s) 241
LpnPI CCDG 5 cut(s) 41, 68, 145, 150, 237
Lsp1109I GCAGC 2 cut(s) 193, 303
LweI GCATC 2 cut(s) 15, 290
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 135
MboII GAAGA 4 cut(s) 64, 67, 210, 228
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 3 cut(s) 186, 201, 294
MlyI GAGTC 2 cut(s) 63, 70
MnlI CCTC 1 cut(s) 317
MseI TTAA 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 10, 278
NmuCI GTSAC 1 cut(s) 135
NsbI TGCGCA 1 cut(s) 5
PciSI GCTCTTC 1 cut(s) 241
PkrI GCNGC 2 cut(s) 183, 318
PleI GAGTC 2 cut(s) 63, 69
PpsI GAGTC 2 cut(s) 63, 69
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 182, 317
SchI GAGTC 2 cut(s) 63, 70
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 15
SetI ASST 3 cut(s) 105, 236, 309
SfaNI GCATC 2 cut(s) 15, 290
Sse9I AATT 3 cut(s) 186, 201, 294
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 324
TasI AATT 3 cut(s) 186, 201, 294
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 2 cut(s) 181, 316
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 186
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.