Rorug02G0379700

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
48492266 .. 48495529
3264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0379700.1

Sequence Viewer

Length: 942 bp
ATGGGGAAGGGAATGCCATACTCCGACGTCGAAAAGGGGACAGAAAGGGGGCAAGAGAAGAGGCGGCACAGGAGTCGACCACCTCCGCCACAAATTTGCCCCCCACCAGAGAAGCCATGGTTTCCGTGGCTCGTGCCAGTCATATTTTCGGCCAATCTCATCATGTTCATCATCACCATGTACATCAACGACTGCCCGTCTCAAGAGAATCATCCTCGGTGCATTTTGCCTTTCTTGAAGAGGTTCTCTTTCCAACCCTTCAAAGAAAACATCCTCCTTGGTCCTTCTGCACTCACTCTGCAAAAGCTAGGTGCCCTTGAAAAGAACTTAGTGGTGGACGACGGAGAAGGATGGCGCCTCTTGTCTTGCATGTGGCTTCATGCTGGAGTTGTTCATCTGGTTGTTAACATGTTAAGCCTACTATTCATAGGAATCCGGCTTGAGCAGGAATTCGGTTTCATCAGAATAGGACCCCTCTACGTACTTTCTGGATTAGCTGGAAGCTTAGCATCTACAAATCATGGAAAAGAATCTAGCGTATCAGTTGGCGCATCTGGGGCACTTTTTGGATTGTTGGGAGCCATGCTATCTGAGCTTTTTACAAACTGGACAATCTATACAAAGAAGTGCATAGCGCTCCTCATACTCGTCAGCGTCATTGCCGTGAATTTGGCATTAGGTTTTCTACCTAAGGTGGACAGTTCAGCTCATGTAGGAGGATTCCTCGCCGGATTTTTCTTTGGCTTTGTTCTTCTTGTTCGCCCTCAATTTGGATATGTAAGCCGCAAGTACATTCCAAGTTCCTACAATGGCAAACTTAAATCTAGGCACAAGTGGTATCAATATGTTCTAGGAATCACTGCTACTATTATCTTAGTTCTTGGATATACATATGCCTTTGGCAAGCTATACGGAGTACCACCAATGAAAAATCTGCCTTGA

Protein Analysis

313

Amino Acids

34.81

Weight (kDa)

9.63

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 115 - 252 5.2e-41 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
AccB1I GGYRCC 2 cut(s) 311, 354
AccI GTMKAC 1 cut(s) 76
AciI CCGC 3 cut(s) 64, 86, 784
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 3 cut(s) 93, 449, 667
AcyI GRCGYC 2 cut(s) 27, 355
AfaI GTAC 4 cut(s) 182, 483, 791, 918
AfeI AGCGCT 1 cut(s) 636
AfiI CCNNNNNNNGG 1 cut(s) 770
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 3 cut(s) 238, 262, 320
AhdI GACNNNNNGTC 1 cut(s) 196
AluBI AGCT 6 cut(s) 307, 497, 504, 595, 707, 907
AluI AGCT 6 cut(s) 307, 497, 504, 595, 707, 907
Alw26I GTCTC 1 cut(s) 204
Aor51HI AGCGCT 1 cut(s) 636
AoxI GGCC 1 cut(s) 150
ApoI RAATTY 3 cut(s) 93, 449, 667
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 3 cut(s) 357, 551, 637
AspS9I GGNCC 2 cut(s) 281, 470
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 2 cut(s) 281, 470
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 2 cut(s) 316, 562
BanI GGYRCC 2 cut(s) 311, 354
BauI CACGAG 1 cut(s) 131
BccI CCATC 1 cut(s) 345
BceAI ACGGC 1 cut(s) 647
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 4 cut(s) 308, 534, 825, 851
BfoI RGCGCY 2 cut(s) 358, 638
BisI GCNGC 2 cut(s) 65, 784
BlpI GCTNAGC 1 cut(s) 505
BlsI GCNGC 2 cut(s) 66, 785
Bme18I GGWCC 2 cut(s) 281, 470
BmeRI GACNNNNNGTC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 281, 470
BmiI GGNNCC 4 cut(s) 313, 356, 472, 580
BmsI GCATC 2 cut(s) 518, 560
BplI GAGNNNNNCTC 2 cut(s) 708, 740
BpmI CTGGAG 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 505
BpuEI CTTGAG 2 cut(s) 186, 461
BsaAI YACGTR 1 cut(s) 481
BsaHI GRCGYC 2 cut(s) 27, 355
BsaJI CCNNGG 4 cut(s) 116, 125, 215, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 770
Bse1I ACTGG 2 cut(s) 137, 611
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 1 cut(s) 657
BseDI CCNNGG 4 cut(s) 116, 125, 215, 277
BseGI GGATG 3 cut(s) 211, 270, 356
BseLI CCNNNNNNNGG 1 cut(s) 770
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 2 cut(s) 137, 611
BseRI GAGGAG 1 cut(s) 629
BseSI GKGCMC 2 cut(s) 316, 562
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 2 cut(s) 311, 354
BsiSI CCGG 2 cut(s) 436, 729
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 770
BsmAI GTCTC 1 cut(s) 204
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 316, 562
Bsp1407I TGTACA 1 cut(s) 180
Bsp1720I GCTNAGC 1 cut(s) 505
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 3 cut(s) 64, 86, 784
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 583
BspLI GGNNCC 4 cut(s) 313, 356, 472, 580
BspT107I GGYRCC 2 cut(s) 311, 354
BsrDI GCAATG 1 cut(s) 657
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 2 cut(s) 137, 611
BssECI CCNNGG 4 cut(s) 116, 125, 215, 277
BssNI GRCGYC 2 cut(s) 27, 355
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 2 cut(s) 116, 277
Bst2BI CACGAG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 2 cut(s) 53, 233
BstACI GRCGYC 2 cut(s) 27, 355
BstAUI TGTACA 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 905
BstDEI CTNAG 5 cut(s) 328, 505, 591, 690, 874
BstDSI CCRYGG 2 cut(s) 116, 125
BstF5I GGATG 3 cut(s) 211, 270, 356
BstH2I RGCGCY 2 cut(s) 358, 638
BstHHI GCGC 3 cut(s) 357, 551, 637
BstMAI GTCTC 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 557, 592
BstNSI RCATGY 2 cut(s) 373, 412
BstSLI GKGCMC 2 cut(s) 316, 562
BstSNI TACGTA 1 cut(s) 481
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 2 cut(s) 116, 125
BtsCI GGATG 3 cut(s) 211, 270, 356
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 1 cut(s) 858
Cac8I GCNNGC 1 cut(s) 905
CfoI GCGC 3 cut(s) 357, 551, 637
Cfr13I GGNCC 2 cut(s) 281, 470
CseI GACGC 1 cut(s) 643
Csp6I GTAC 4 cut(s) 181, 482, 790, 917
CviAII CATG 9 cut(s) 117, 163, 178, 370, 380, 409, 521, 583, 710
CviQI GTAC 4 cut(s) 181, 482, 790, 917
DdeI CTNAG 5 cut(s) 328, 505, 591, 690, 874
DinI GGCGCC 1 cut(s) 356
DriI GACNNNNNGTC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 53, 233
Eam1105I GACNNNNNGTC 1 cut(s) 196
EarI CTCTTC 2 cut(s) 53, 233
EciI GGCGGA 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 116, 277
Eco47I GGWCC 2 cut(s) 281, 470
Eco47III AGCGCT 1 cut(s) 636
Eco81I CCTNAGG 1 cut(s) 690
EcoO109I RGGNCCY 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 449
EcoT14I CCWWGG 2 cut(s) 116, 277
EgeI GGCGCC 1 cut(s) 356
EheI GGCGCC 1 cut(s) 356
ErhI CCWWGG 2 cut(s) 116, 277
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 9 cut(s) 120, 166, 181, 373, 383, 412, 524, 586, 713
FaqI GGGAC 1 cut(s) 52
FatI CATG 9 cut(s) 116, 162, 177, 369, 379, 408, 520, 582, 709
FauNDI CATATG 1 cut(s) 892
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 65, 784
FokI GGATG 3 cut(s) 198, 257, 363
Fsp4HI GCNGC 2 cut(s) 65, 784
FspBI CTAG 4 cut(s) 308, 534, 825, 851
GlaI GCGC 3 cut(s) 356, 550, 636
GluI GCNGC 2 cut(s) 65, 784
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 2 cut(s) 358, 638
HaeIII GGCC 1 cut(s) 152
HapII CCGG 2 cut(s) 436, 729
HgaI GACGC 1 cut(s) 643
HhaI GCGC 3 cut(s) 357, 551, 637
Hin1I GRCGYC 2 cut(s) 27, 355
Hin1II CATG 9 cut(s) 120, 166, 181, 373, 383, 412, 524, 586, 713
Hin6I GCGC 3 cut(s) 355, 549, 635
HinP1I GCGC 3 cut(s) 355, 549, 635
HincII GTYRAC 2 cut(s) 77, 406
HindII GTYRAC 2 cut(s) 77, 406
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 6 cut(s) 73, 208, 432, 530, 720, 855
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 2 cut(s) 436, 729
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 4 cut(s) 77, 337, 406, 697
Hpy188I TCNGA 3 cut(s) 25, 464, 592
Hpy188III TCNNGA 3 cut(s) 203, 235, 489
Hpy8I GTNNAC 4 cut(s) 77, 337, 406, 697
Hpy99I CGWCG 3 cut(s) 29, 32, 344
HpyAV CCTTC 3 cut(s) 268, 294, 341
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 2 cut(s) 27, 480
HpyCH4V TGCA 5 cut(s) 222, 290, 301, 369, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 557, 592
HpyF3I CTNAG 5 cut(s) 328, 505, 591, 690, 874
HpySE526I ACGT 2 cut(s) 27, 480
Hsp92I GRCGYC 2 cut(s) 27, 355
Hsp92II CATG 9 cut(s) 120, 166, 181, 373, 383, 412, 524, 586, 713
HspAI GCGC 3 cut(s) 355, 549, 635
KasI GGCGCC 1 cut(s) 354
KspAI GTTAAC 1 cut(s) 406
LmnI GCTCC 2 cut(s) 578, 642
LweI GCATC 2 cut(s) 518, 560
MaeI CTAG 4 cut(s) 308, 534, 825, 851
MaeII ACGT 2 cut(s) 27, 480
MboII GAAGA 3 cut(s) 70, 250, 743
MhlI GDGCHC 2 cut(s) 316, 562
MluCI AATT 4 cut(s) 93, 449, 667, 767
Mly113I GGCGCC 1 cut(s) 355
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 2 cut(s) 48, 277
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 3 cut(s) 405, 413, 819
MslI CAYNNNNRTG 2 cut(s) 176, 662
MspI CCGG 2 cut(s) 436, 729
Mva1269I GAATGC 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 557, 592
NarI GGCGCC 1 cut(s) 355
NcoI CCATGG 1 cut(s) 116
NdeI CATATG 1 cut(s) 892
NlaIII CATG 9 cut(s) 120, 166, 181, 373, 383, 412, 524, 586, 713
NlaIV GGNNCC 4 cut(s) 313, 356, 472, 580
NspI RCATGY 2 cut(s) 373, 412
PciI ACATGT 1 cut(s) 408
PctI GAATGC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 5 cut(s) 208, 432, 530, 720, 855
PkrI GCNGC 2 cut(s) 66, 785
PleI GAGTC 1 cut(s) 81
PluTI GGCGCC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 481
PpuMI RGGWCCY 1 cut(s) 470
PscI ACATGT 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 470
PspN4I GGNNCC 4 cut(s) 313, 356, 472, 580
PspPI GGNCC 2 cut(s) 281, 470
PspPPI RGGWCCY 1 cut(s) 470
RsaI GTAC 4 cut(s) 182, 483, 791, 918
RsaNI GTAC 4 cut(s) 181, 482, 790, 917
RseI CAYNNNNRTG 2 cut(s) 176, 662
SalI GTCGAC 1 cut(s) 75
SaqAI TTAA 3 cut(s) 405, 413, 819
SatI GCNGC 2 cut(s) 65, 784
Sau96I GGNCC 2 cut(s) 281, 470
SchI GAGTC 1 cut(s) 82
SduI GDGCHC 2 cut(s) 316, 562
SfaNI GCATC 2 cut(s) 518, 560
SfoI GGCGCC 1 cut(s) 356
SinI GGWCC 2 cut(s) 281, 470
SmiMI CAYNNNNRTG 2 cut(s) 176, 662
SmlI CTYRAG 2 cut(s) 201, 440
SmoI CTYRAG 2 cut(s) 201, 440
SnaBI TACGTA 1 cut(s) 481
Sse9I AATT 4 cut(s) 93, 449, 667, 767
SsiI CCGC 3 cut(s) 64, 86, 784
SspDI GGCGCC 1 cut(s) 354
SspMI CTAG 4 cut(s) 308, 534, 825, 851
StyI CCWWGG 2 cut(s) 116, 277
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 2 cut(s) 30, 483
TaqI TCGA 2 cut(s) 30, 76
TasI AATT 4 cut(s) 93, 449, 667, 767
TatI WGTACW 2 cut(s) 180, 789
TauI GCSGC 2 cut(s) 67, 786
TfiI GAWTC 5 cut(s) 208, 432, 530, 720, 855
Tru1I TTAA 3 cut(s) 405, 413, 819
Tru9I TTAA 3 cut(s) 405, 413, 819
TscAI CASTG 1 cut(s) 865
TspDTI ATGAA 6 cut(s) 157, 368, 383, 415, 448, 941
TspGWI ACGGA 3 cut(s) 114, 357, 927
TspRI CASTG 1 cut(s) 865
VpaK11BI GGWCC 2 cut(s) 281, 470
XapI RAATTY 3 cut(s) 93, 449, 667
XceI RCATGY 2 cut(s) 373, 412
XcmI CCANNNNNNNNNTGG 2 cut(s) 114, 123
XmiI GTMKAC 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 4 cut(s) 308, 534, 825, 851
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.