Rmu_sc0002816.1_g000004

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002816.1
OG0000254
Physical Location & Seq
Reverse (-)
18101 .. 21161
3061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002816.1_g000004.1.cds

Sequence Viewer

Length: 1197 bp
atgcttgctaaggccagttggcgaattgtgcagaatgatgatggcctctggtgtaatatttttaaacaaaagtatttgaaaaaggatgacttgctgaaccccgcctacaagaaaccaaagaattgttcaagcacatggagcagtgtgtgttttggtgcttctctcttgcgacagggtgctatatggagaattgggaatggcgaatctgttcatttctggactgataaatggttagatgttggtcccctttgtcatcaggctcttgatcctactgtggttgatgatcacttattggtacaggatttttggatggataattgttgggacactattcttctctatgcttgtctgcctcctgagattgtggaaaaaatcttatgtatccctatttccaatccagcttctgtgagggataaagtcatctggcagcatacctcaaatggaaaattttcagtcaaaagtgcctataactgccttgttaccattcagcaaacaccttctagaaaatggaggcatatttggaatctttctatccctccgaaactaaagatcttcacttggctatttattcaaagtagattgcttactaatgagaatagattcagaaggcacatgacagataaccccaattgtagtcattgtattgatctgtatgaatctatgcttcatcttttcagggattgcagaaaggccaaggaagtttggaaagatgttggtgttcctgttactatgcaaaggactttcaaccttgattgggaagggtggatcactgctaatctttaccagaacaactgtgctggtggagttattagaaataatgaaggtgtttggtgcaagggttttatgcagcatattggttatggtgaagtcttgcaagctgaagcttggggccttgtgactggacttcaaattgcggttgatatgcagattaagcatctggatgtggaatctgattctgctattctcataaatctaattcagaatctagttctcccaaaatcaaagcgatcccaaaatcaaaatcgtctgaaaatcaaaatcctctctaaatcaacatctccgaagaagctagggcacgaccttagcggcaaaacaagcacgcgacccttgcagcaaagtaatcgtgcgaccccggcggtgaagcaagggaaccataccagcggcgaagctagggagcgacaccagaggctaagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

398

Amino Acids

45.71

Weight (kDa)

9.31

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1102
AciI CCGC 5 cut(s) 102, 914, 1086, 1136, 1161
AclWI GGATC 3 cut(s) 260, 773, 1002
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 900
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 754
AgsI TTSAA 5 cut(s) 79, 129, 572, 745, 908
AjuI GAANNNNNNNTTGG 2 cut(s) 109, 141
AluBI AGCT 6 cut(s) 401, 878, 884, 1069, 1169, 1194
AluI AGCT 6 cut(s) 401, 878, 884, 1069, 1169, 1194
AlwI GGATC 3 cut(s) 260, 773, 1002
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 4 cut(s) 12, 43, 690, 889
ApeKI GCWGC 3 cut(s) 427, 847, 1111
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 3 cut(s) 207, 448, 599
AspS9I GGNCC 2 cut(s) 242, 889
AsuC2I CCSGG 1 cut(s) 1133
AsuHPI GGTGA 2 cut(s) 875, 1150
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 1077
BbvI GCAGC 3 cut(s) 439, 859, 1123
BccI CCATC 2 cut(s) 35, 304
BcgI CGANNNNNNTGC 2 cut(s) 1103, 1137
BciVI GTATCC 1 cut(s) 392
BclI TGATCA 1 cut(s) 283
BcnI CCSGG 1 cut(s) 1133
BfaI CTAG 5 cut(s) 501, 986, 1070, 1170, 1195
BfuI GTATCC 1 cut(s) 392
BglII AGATCT 1 cut(s) 549
BisI GCNGC 5 cut(s) 428, 848, 1087, 1112, 1162
BlpI GCTNAGC 1 cut(s) 1190
BlsI GCNGC 5 cut(s) 429, 849, 1088, 1113, 1163
Bme1390I CCNGG 1 cut(s) 1133
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 242, 889
BmiI GGNNCC 3 cut(s) 244, 890, 1151
BmrFI CCNGG 1 cut(s) 1133
BmsI GCATC 1 cut(s) 943
Bpu10I CCTNAGC 2 cut(s) 9, 1082
Bpu1102I GCTNAGC 1 cut(s) 1190
BpuMI CCSGG 1 cut(s) 1133
BsaJI CCNNGG 2 cut(s) 693, 1131
Bsc4I CCNNNNNNNGG 1 cut(s) 754
Bse1I ACTGG 2 cut(s) 15, 904
BseDI CCNNGG 2 cut(s) 693, 1131
BseGI GGATG 3 cut(s) 91, 315, 946
BseLI CCNNNNNNNGG 1 cut(s) 754
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 15, 904
BseSI GKGCMC 1 cut(s) 1077
BseXI GCAGC 3 cut(s) 439, 859, 1123
BsgI GTGCAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 1102
BshFI GGCC 4 cut(s) 14, 45, 692, 891
BsiSI CCGG 1 cut(s) 1133
BslFI GGGAC 2 cut(s) 228, 338
BslI CCNNNNNNNGG 1 cut(s) 754
BsmFI GGGAC 2 cut(s) 228, 338
BsnI GGCC 4 cut(s) 14, 45, 692, 891
Bsp1286I GDGCHC 1 cut(s) 1077
Bsp143I GATC 6 cut(s) 265, 283, 549, 646, 765, 1007
Bsp1720I GCTNAGC 1 cut(s) 1190
BspACI CCGC 5 cut(s) 102, 914, 1086, 1136, 1161
BspANI GGCC 4 cut(s) 14, 45, 692, 891
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 1102
BspLI GGNNCC 3 cut(s) 244, 890, 1151
BspPI GGATC 3 cut(s) 260, 773, 1002
BsrI ACTGG 2 cut(s) 15, 904
BssECI CCNNGG 2 cut(s) 693, 1131
BssMI GATC 6 cut(s) 265, 283, 549, 646, 765, 1007
BssT1I CCWWGG 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 274, 794
BstC8I GCNNGC 3 cut(s) 6, 876, 1100
BstDEI CTNAG 4 cut(s) 9, 357, 1082, 1190
BstF5I GGATG 3 cut(s) 91, 315, 946
BstFNI CGCG 1 cut(s) 1102
BstKTI GATC 6 cut(s) 268, 286, 552, 649, 768, 1010
BstMBI GATC 6 cut(s) 265, 283, 549, 646, 765, 1007
BstMWI GCNNNNNNNGC 6 cut(s) 28, 138, 931, 1095, 1108, 1133
BstSCI CCNGG 1 cut(s) 1131
BstSLI GKGCMC 1 cut(s) 1077
BstUI CGCG 1 cut(s) 1102
BstV1I GCAGC 3 cut(s) 439, 859, 1123
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 4 cut(s) 14, 45, 692, 891
BtsCI GGATG 3 cut(s) 91, 315, 946
BtsI GCAGTG 2 cut(s) 148, 768
BtsIMutI CAGTG 2 cut(s) 148, 768
Cac8I GCNNGC 3 cut(s) 6, 876, 1100
CaiI CAGNNNCTG 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 242, 889
Csp6I GTAC 1 cut(s) 296
CviAII CATG 2 cut(s) 135, 613
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 4 cut(s) 9, 357, 1082, 1190
DpnI GATC 6 cut(s) 267, 285, 551, 648, 767, 1009
DpnII GATC 6 cut(s) 265, 283, 549, 646, 765, 1007
DraI TTTAAA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 900
EcoO109I RGGNCCY 1 cut(s) 889
EcoT14I CCWWGG 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 693
FaeI CATG 2 cut(s) 138, 616
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 2 cut(s) 228, 338
FatI CATG 2 cut(s) 134, 612
FauI CCCGC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 5 cut(s) 428, 848, 1087, 1112, 1162
FokI GGATG 3 cut(s) 98, 322, 953
Fsp4HI GCNGC 5 cut(s) 428, 848, 1087, 1112, 1162
FspBI CTAG 5 cut(s) 501, 986, 1070, 1170, 1195
GluI GCNGC 5 cut(s) 428, 848, 1087, 1112, 1162
HaeIII GGCC 4 cut(s) 14, 45, 692, 891
HapII CCGG 1 cut(s) 1133
Hin1II CATG 2 cut(s) 138, 616
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 7 cut(s) 203, 523, 600, 656, 947, 953, 982
HpaII CCGG 1 cut(s) 1133
HphI GGTGA 2 cut(s) 875, 1150
Hpy188I TCNGA 6 cut(s) 540, 605, 952, 981, 1029, 1062
Hpy188III TCNNGA 5 cut(s) 217, 263, 356, 501, 938
HpyAV CCTTC 4 cut(s) 507, 600, 752, 815
HpyCH4III ACNGT 2 cut(s) 274, 794
HpyCH4V TGCA 8 cut(s) 31, 684, 733, 834, 847, 874, 925, 1111
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 138, 931, 1095, 1108, 1133
HpyF3I CTNAG 4 cut(s) 9, 357, 1082, 1190
Hsp92II CATG 2 cut(s) 138, 616
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 6 cut(s) 265, 283, 549, 646, 765, 1007
LmnI GCTCC 2 cut(s) 138, 1174
Lsp1109I GCAGC 3 cut(s) 439, 859, 1123
LweI GCATC 1 cut(s) 943
MaeI CTAG 5 cut(s) 501, 986, 1070, 1170, 1195
MaeIII GTNAC 3 cut(s) 478, 724, 895
MalI GATC 6 cut(s) 267, 285, 551, 648, 767, 1009
MboI GATC 6 cut(s) 265, 283, 549, 646, 765, 1007
MboII GAAGA 3 cut(s) 326, 544, 1075
MfeI CAATTG 1 cut(s) 628
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 1 cut(s) 1077
MluCI AATT 8 cut(s) 24, 121, 189, 316, 446, 628, 909, 975
MnlI CCTC 8 cut(s) 56, 363, 402, 445, 504, 546, 1052, 1179
MroXI GAANNNNTTC 3 cut(s) 207, 448, 599
MseI TTAA 2 cut(s) 63, 930
MslI CAYNNNNRTG 1 cut(s) 939
MspA1I CMGCKG 1 cut(s) 1161
MspI CCGG 1 cut(s) 1133
MspR9I CCNGG 1 cut(s) 1133
MunI CAATTG 1 cut(s) 628
MvnI CGCG 1 cut(s) 1102
MwoI GCNNNNNNNGC 6 cut(s) 28, 138, 931, 1095, 1108, 1133
NciI CCSGG 1 cut(s) 1133
NdeII GATC 6 cut(s) 265, 283, 549, 646, 765, 1007
NlaIII CATG 2 cut(s) 138, 616
NlaIV GGNNCC 3 cut(s) 244, 890, 1151
NmuCI GTSAC 1 cut(s) 895
PdmI GAANNNNTTC 3 cut(s) 207, 448, 599
PfeI GAWTC 7 cut(s) 203, 523, 600, 656, 947, 953, 982
PkrI GCNGC 5 cut(s) 429, 849, 1088, 1113, 1163
PspN4I GGNNCC 3 cut(s) 244, 890, 1151
PspPI GGNCC 2 cut(s) 242, 889
PsrI GAACNNNNNNTAC 2 cut(s) 89, 121
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 549
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 939
SaqAI TTAA 2 cut(s) 63, 930
SatI GCNGC 5 cut(s) 428, 848, 1087, 1112, 1162
Sau3AI GATC 6 cut(s) 265, 283, 549, 646, 765, 1007
Sau96I GGNCC 2 cut(s) 242, 889
ScrFI CCNGG 1 cut(s) 1133
SduI GDGCHC 1 cut(s) 1077
SfaNI GCATC 1 cut(s) 943
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 939
Sse9I AATT 8 cut(s) 24, 121, 189, 316, 446, 628, 909, 975
SsiI CCGC 5 cut(s) 102, 914, 1086, 1136, 1161
SspI AATATT 1 cut(s) 58
SspMI CTAG 5 cut(s) 501, 986, 1070, 1170, 1195
StyD4I CCNGG 1 cut(s) 1131
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 2 cut(s) 274, 794
TasI AATT 8 cut(s) 24, 121, 189, 316, 446, 628, 909, 975
TauI GCSGC 2 cut(s) 1089, 1164
TfiI GAWTC 7 cut(s) 203, 523, 600, 656, 947, 953, 982
Tru1I TTAA 2 cut(s) 63, 930
Tru9I TTAA 2 cut(s) 63, 930
TscAI CASTG 2 cut(s) 148, 775
TseFI GTSAC 1 cut(s) 895
TseI GCWGC 3 cut(s) 427, 847, 1111
Tsp45I GTSAC 1 cut(s) 895
TspDTI ATGAA 4 cut(s) 200, 656, 669, 834
TspRI CASTG 2 cut(s) 148, 775
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 446
XbaI TCTAGA 1 cut(s) 500
XmnI GAANNNNTTC 3 cut(s) 207, 448, 599
XspI CTAG 5 cut(s) 501, 986, 1070, 1170, 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.