RchiOBHm_Chr2g0128961

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000254
Physical Location & Seq
Reverse (-)
44433869 .. 44434462
594 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50066

Sequence Viewer

Length: 522 bp
ATGATCTCATGGTGTAAACCTGGCTTAGGTTTCTTTAAGCTAAATGTGGATGGTTCCAGGTCTTCTAATGGTATGATTGGTTCAGGAGGAGTGATCAGAGATGCTATTGGTGAATGGATAAGTGGATTTATGGTGAACATTGGTGCTGGTTCAGTCATTCAAGCTGAGACTTGGGGGCTCTATCATGGCCTTCAAATTGCCTCTTCTCTGCATATTAATCATTTGGAGGTTGAATCTGACTCTGCTTGTTTAGTTCAGCTGCTCCAATCTGATGCTATTGAATTGCATCCTCTTGGTACTATCCTCATGAATTGCAAGCAATTACTGAACCAATTTGATGCCTGCCAGATTAGGCATATCCACAGAGAAGGTAATATGGTTGCTGATATCCTTGCTAAAGAAAGTATTCATCACTCTGCTGGTATTTGTACTTTCACTTCTCCTCCCGCTCTAGTTGTTGAAGCTGTCCTTGATGATATCCTGGGTGTTGCTAGACCTAGGGAAGTTGTTAACAATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.6

Weight (kDa)

5.5

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 15 - 134 8.7e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 449
AciI CCGC 1 cut(s) 447
AfaI GTAC 2 cut(s) 298, 430
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 5 cut(s) 161, 194, 233, 281, 461
AjnI CCWGG 3 cut(s) 19, 56, 480
AluBI AGCT 4 cut(s) 40, 164, 259, 464
AluI AGCT 4 cut(s) 40, 164, 259, 464
Alw26I GTCTC 1 cut(s) 161
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 259
AseI ATTAAT 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 405
AspA2I CCTAGG 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 122, 145
AvrII CCTAGG 1 cut(s) 497
BanII GRGCYC 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 421, 453
BbsI GAAGAC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 246
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 3 cut(s) 21, 58, 482
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 3 cut(s) 452, 492, 498
BisI GCNGC 1 cut(s) 260
BlnI CCTAGG 1 cut(s) 497
BlsI GCNGC 1 cut(s) 261
Bme1390I CCNGG 3 cut(s) 21, 58, 482
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 3 cut(s) 21, 58, 482
BmsI GCATC 4 cut(s) 91, 262, 295, 328
BpiI GAAGAC 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 481, 497
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseBI CCWGG 3 cut(s) 21, 58, 482
BseDI CCNNGG 2 cut(s) 481, 497
BseGI GGATG 2 cut(s) 55, 286
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 2 cut(s) 102, 432
BseXI GCAGC 1 cut(s) 246
BshFI GGCC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 3, 93
BspACI CCGC 1 cut(s) 447
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 157
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 481, 497
BssMI GATC 2 cut(s) 3, 93
BssT1I CCWWGG 1 cut(s) 497
Bst2UI CCWGG 3 cut(s) 21, 58, 482
Bst6I CTCTTC 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 317, 343
BstDEI CTNAG 2 cut(s) 25, 165
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 55, 286
BstKTI GATC 2 cut(s) 6, 96
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 3, 93
BstNI CCWGG 3 cut(s) 21, 58, 482
BstSCI CCNGG 3 cut(s) 19, 56, 480
BstV1I GCAGC 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 55, 286
Cac8I GCNNGC 2 cut(s) 317, 343
CciI TCATGA 1 cut(s) 306
Csp6I GTAC 2 cut(s) 297, 429
CviAII CATG 3 cut(s) 9, 185, 307
CviJI RGCY 8 cut(s) 24, 40, 164, 178, 189, 259, 464, 519
CviKI_1 RGCY 8 cut(s) 24, 40, 164, 178, 189, 259, 464, 519
CviQI GTAC 2 cut(s) 297, 429
DdeI CTNAG 2 cut(s) 25, 165
DpnI GATC 2 cut(s) 5, 95
DpnII GATC 2 cut(s) 3, 93
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 180
Eco32I GATATC 2 cut(s) 388, 478
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoRII CCWGG 3 cut(s) 19, 56, 480
EcoRV GATATC 2 cut(s) 388, 478
EcoT14I CCWWGG 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 3 cut(s) 12, 188, 310
FaiI YATR 8 cut(s) 10, 74, 131, 186, 213, 308, 357, 377
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 3 cut(s) 8, 184, 306
FauI CCCGC 1 cut(s) 454
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 260
FokI GGATG 2 cut(s) 62, 273
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 260
FspBI CTAG 3 cut(s) 452, 492, 498
GluI GCNGC 1 cut(s) 260
HaeIII GGCC 1 cut(s) 189
Hin1II CATG 3 cut(s) 12, 188, 310
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 2 cut(s) 233, 239
HpaI GTTAAC 1 cut(s) 511
HphI GGTGA 2 cut(s) 122, 145
Hpy166II GTNNAC 3 cut(s) 17, 136, 511
Hpy188I TCNGA 3 cut(s) 98, 238, 271
Hpy188III TCNNGA 2 cut(s) 84, 307
Hpy8I GTNNAC 3 cut(s) 17, 136, 511
HpyAV CCTTC 2 cut(s) 200, 362
HpyCH4V TGCA 3 cut(s) 211, 286, 315
HpyF3I CTNAG 2 cut(s) 25, 165
Hsp92II CATG 3 cut(s) 12, 188, 310
Ksp22I TGATCA 1 cut(s) 93
KspAI GTTAAC 1 cut(s) 511
Kzo9I GATC 2 cut(s) 3, 93
LmnI GCTCC 1 cut(s) 267
Lsp1109I GCAGC 1 cut(s) 246
LweI GCATC 4 cut(s) 91, 262, 295, 328
MaeI CTAG 3 cut(s) 452, 492, 498
MalI GATC 2 cut(s) 5, 95
MbiI CCGCTC 1 cut(s) 449
MboI GATC 2 cut(s) 3, 93
MboII GAAGA 2 cut(s) 54, 195
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 5 cut(s) 195, 281, 310, 320, 332
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 6 cut(s) 80, 211, 220, 300, 314, 453
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 3 cut(s) 36, 216, 510
MspA1I CMGCKG 1 cut(s) 259
MspR9I CCNGG 3 cut(s) 21, 58, 482
MvaI CCWGG 3 cut(s) 21, 58, 482
NdeII GATC 2 cut(s) 3, 93
NlaIII CATG 3 cut(s) 12, 188, 310
NlaIV GGNNCC 1 cut(s) 55
PagI TCATGA 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 261
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PshBI ATTAAT 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 19, 56, 480
PspGI CCWGG 3 cut(s) 19, 56, 480
PspN4I GGNNCC 1 cut(s) 55
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 2 cut(s) 298, 430
RsaNI GTAC 2 cut(s) 297, 429
SaqAI TTAA 3 cut(s) 36, 216, 510
SatI GCNGC 1 cut(s) 260
Sau3AI GATC 2 cut(s) 3, 93
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 3 cut(s) 21, 58, 482
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 4 cut(s) 91, 262, 295, 328
Sse9I AATT 5 cut(s) 195, 281, 310, 320, 332
SsiI CCGC 1 cut(s) 447
SspMI CTAG 3 cut(s) 452, 492, 498
StyD4I CCNGG 3 cut(s) 19, 56, 480
StyI CCWWGG 1 cut(s) 497
TasI AATT 5 cut(s) 195, 281, 310, 320, 332
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 3 cut(s) 36, 216, 510
Tru9I TTAA 3 cut(s) 36, 216, 510
TseI GCWGC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 323, 398
VspI ATTAAT 1 cut(s) 216
XagI CCTNNNNNAGG 1 cut(s) 24
XmaJI CCTAGG 1 cut(s) 497
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 3 cut(s) 452, 492, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.