Rmu_sc0004053.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004053.1
OG0000254
Physical Location & Seq
Forward (+)
26363 .. 26832
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004053.1_g000007.1.cds

Sequence Viewer

Length: 348 bp
atggtgaacaaagaaaatcatagggtgattggagtcatcagggaccacactgggagttgggtgattggcttccaaatcaacttagggctagtgcggcagcaaaacctttctacccaccctcttggatctctgcttgatggatgcaacaactttatggccactatgcagaatgtccagcttatgcatatcttccatgggtgtaatatgatagcagatgctttggctagatgcaacattgatcatgagcctggtctcatcacttttatggatcctcctatccatgctactgaagcatttcttgatgatcttgctattgtaactagaactaggagaactgtctcctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

115

Amino Acids

12.83

Weight (kDa)

6.34

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 94
AclWI GGATC 3 cut(s) 133, 263, 276
AcoI YGGCCR 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 309
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 257, 343
AlwI GGATC 3 cut(s) 133, 263, 276
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 3 cut(s) 16, 37, 73
AvaII GGWCC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 158
BamHI GGATCC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 249
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 257, 343
BfaI CTAG 4 cut(s) 89, 225, 321, 327
BisI GCNGC 2 cut(s) 95, 98
BlsI GCNGC 2 cut(s) 96, 99
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 44, 270
BmrFI CCNGG 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 3 cut(s) 131, 205, 218
BmuI ACTGGG 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 331
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 1 cut(s) 158
BslFI GGGAC 1 cut(s) 56
BsmAI GTCTC 2 cut(s) 257, 343
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 4 cut(s) 125, 238, 268, 304
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 158
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 44, 270
BspPI GGATC 3 cut(s) 133, 263, 276
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 4 cut(s) 125, 238, 268, 304
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 82, 345
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 4 cut(s) 128, 241, 271, 307
BstMAI GTCTC 2 cut(s) 257, 343
BstMBI GATC 4 cut(s) 125, 238, 268, 304
BstMWI GCNNNNNNNGC 2 cut(s) 94, 290
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 125, 268
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 2 cut(s) 125, 268
BsuRI GGCC 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 48
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 43
CviAII CATG 3 cut(s) 194, 242, 281
CviJI RGCY 6 cut(s) 69, 88, 158, 178, 224, 247
CviKI_1 RGCY 6 cut(s) 69, 88, 158, 178, 224, 247
DdeI CTNAG 2 cut(s) 82, 345
DpnI GATC 4 cut(s) 127, 240, 270, 306
DpnII GATC 4 cut(s) 125, 238, 268, 304
EaeI YGGCCR 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 197, 245, 284
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 193, 241, 280
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 95, 98
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 95, 98
FspBI CTAG 4 cut(s) 89, 225, 321, 327
GluI GCNGC 2 cut(s) 95, 98
HaeIII GGCC 1 cut(s) 158
Hin1II CATG 3 cut(s) 197, 245, 284
HinfI GANTC 1 cut(s) 33
HphI GGTGA 3 cut(s) 16, 37, 73
Hpy166II GTNNAC 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 242, 299
Hpy8I GTNNAC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 4 cut(s) 144, 166, 184, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 290
HpyF3I CTNAG 2 cut(s) 82, 345
Hsp92II CATG 3 cut(s) 197, 245, 284
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 4 cut(s) 125, 238, 268, 304
LpnPI CCDG 5 cut(s) 25, 36, 188, 234, 261
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 3 cut(s) 131, 205, 218
MaeI CTAG 4 cut(s) 89, 225, 321, 327
MaeIII GTNAC 1 cut(s) 316
MalI GATC 4 cut(s) 127, 240, 270, 306
MboI GATC 4 cut(s) 125, 238, 268, 304
MboII GAAGA 1 cut(s) 181
MflI RGATCY 2 cut(s) 125, 268
MlsI TGGCCA 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 2 cut(s) 129, 282
Mox20I TGGCCA 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 294
MscI TGGCCA 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 94, 290
NcoI CCATGG 1 cut(s) 193
NdeII GATC 4 cut(s) 125, 238, 268, 304
NlaIII CATG 3 cut(s) 197, 245, 284
NlaIV GGNNCC 2 cut(s) 44, 270
NsiI ATGCAT 1 cut(s) 186
PagI TCATGA 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 294
PkrI GCNGC 2 cut(s) 96, 99
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 44, 270
PspPI GGNCC 1 cut(s) 43
PsuI RGATCY 2 cut(s) 125, 268
RseI CAYNNNNRTG 1 cut(s) 263
SatI GCNGC 2 cut(s) 95, 98
Sau3AI GATC 4 cut(s) 125, 238, 268, 304
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 249
SetI ASST 2 cut(s) 108, 180
SfaNI GCATC 3 cut(s) 131, 205, 218
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 263
SsiI CCGC 1 cut(s) 94
SspMI CTAG 4 cut(s) 89, 225, 321, 327
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 337
TauI GCSGC 1 cut(s) 97
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 97
TspRI CASTG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 4 cut(s) 89, 225, 321, 327
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.