RchiOBHm_Chr2g0127141

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000254
Physical Location & Seq
Forward (+)
41923627 .. 41924205
579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49904

Sequence Viewer

Length: 579 bp
ATGAATGCTCAAGCTCAACTCTCCAGGTTAGATAGTTATTGTCTTAATATCCTTTCTTGGTTGAAACCTCCAATCGGATTTATGAAACTTAATGTGGATGGCACCAGATCCAATCAATCTGGGTTTATTGGAGCTGGTGGGGTAATTAGAGATCATAATGGAGATTGGTTGTCTGGCTTCAGCATAAACTTGGGGGTTGGCCAAATCATCAATGCTGAAGCTAGGGGGTTGCTTTCTGGGTTGAAACTTGCTTCTGACCTGAATATCAGAAAGCTTGAAGTAGAATCTGACTCAGCTATCTTTGTTAAGTTGCTGATTGATGGTTGCCCTATATCTCATCCTTTAGGCAACATTATCAACAGTTGTAGACATCTAATTAATGGTTTTGAAGACGTTAGGATCCGGCATATTTTCAGGGAATGCAACTATACTGCTGATGCTCTTGCTAAGGGAAGTCTCAGTCATGACTATGGTATTGTGATTTTTGACACCCCTCCCCCTCATGTTGCTAGTGCTTTCACTGATGATCTTTGCAATCTCCCAAGAGCTAGGAGAGTTAGAACAAGGCCTGAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

192

Amino Acids

21.02

Weight (kDa)

7.7

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 31 - 150 1.8e-27 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 367
AclWI GGATC 3 cut(s) 102, 394, 407
AcoI YGGCCR 1 cut(s) 199
AcuI CTGAAG 2 cut(s) 163, 237
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 4 cut(s) 64, 244, 278, 389
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 6 cut(s) 14, 134, 221, 274, 296, 548
AluI AGCT 6 cut(s) 14, 134, 221, 274, 296, 548
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 3 cut(s) 102, 394, 407
AoxI GGCC 2 cut(s) 199, 566
AseI ATTAAT 1 cut(s) 378
AxyI CCTNAGG 1 cut(s) 570
BalI TGGCCA 1 cut(s) 201
BamHI GGATCC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 396
BccI CCATC 2 cut(s) 92, 314
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 3 cut(s) 222, 510, 549
Bme1390I CCNGG 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 103, 401
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 7
Bpu10I CCTNAGC 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse21I CCTNAGG 1 cut(s) 570
BseBI CCWGG 1 cut(s) 25
BseGI GGATG 2 cut(s) 103, 337
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 3 cut(s) 306, 472, 561
BshFI GGCC 2 cut(s) 201, 568
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 461
BsmI GAATGC 2 cut(s) 10, 425
BsnI GGCC 2 cut(s) 201, 568
Bsp143I GATC 4 cut(s) 107, 151, 399, 526
BspANI GGCC 2 cut(s) 201, 568
BspCNI CTCAG 3 cut(s) 305, 471, 562
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 103, 401
BspPI GGATC 3 cut(s) 102, 394, 407
BspT107I GGYRCC 1 cut(s) 101
BssMI GATC 4 cut(s) 107, 151, 399, 526
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 362
BstDEI CTNAG 4 cut(s) 292, 447, 458, 570
BstF5I GGATG 2 cut(s) 103, 337
BstKTI GATC 4 cut(s) 110, 154, 402, 529
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 4 cut(s) 107, 151, 399, 526
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 107, 399
BstYI RGATCY 2 cut(s) 107, 399
Bsu36I CCTNAGG 1 cut(s) 570
BsuRI GGCC 2 cut(s) 201, 568
BtsCI GGATG 2 cut(s) 103, 337
BtsIMutI CAGTG 1 cut(s) 519
CciI TCATGA 1 cut(s) 463
CviAII CATG 2 cut(s) 464, 503
CviJI RGCY 9 cut(s) 14, 134, 177, 201, 221, 274, 296, 548, 568
CviKI_1 RGCY 9 cut(s) 14, 134, 177, 201, 221, 274, 296, 548, 568
DdeI CTNAG 4 cut(s) 292, 447, 458, 570
DpnI GATC 4 cut(s) 109, 153, 401, 528
DpnII GATC 4 cut(s) 107, 151, 399, 526
EaeI YGGCCR 1 cut(s) 199
Eco147I AGGCCT 1 cut(s) 568
Eco57I CTGAAG 2 cut(s) 163, 237
Eco81I CCTNAGG 1 cut(s) 570
EcoRII CCWGG 1 cut(s) 23
FaeI CATG 2 cut(s) 467, 506
FaiI YATR 9 cut(s) 83, 156, 185, 332, 408, 429, 465, 471, 504
FatI CATG 2 cut(s) 463, 502
FblI GTMKAC 1 cut(s) 367
FokI GGATG 2 cut(s) 110, 324
FspBI CTAG 3 cut(s) 222, 510, 549
GsuI CTGGAG 1 cut(s) 7
HaeIII GGCC 2 cut(s) 201, 568
HapII CCGG 1 cut(s) 403
Hin1II CATG 2 cut(s) 467, 506
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 2 cut(s) 284, 290
HpaII CCGG 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 4 cut(s) 77, 256, 269, 289
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 2 cut(s) 423, 534
HpyF3I CTNAG 4 cut(s) 292, 447, 458, 570
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 2 cut(s) 467, 506
Kzo9I GATC 4 cut(s) 107, 151, 399, 526
LmnI GCTCC 1 cut(s) 131
LweI GCATC 1 cut(s) 427
MaeI CTAG 3 cut(s) 222, 510, 549
MaeII ACGT 1 cut(s) 393
MalI GATC 4 cut(s) 109, 153, 401, 528
MboI GATC 4 cut(s) 107, 151, 399, 526
MboII GAAGA 1 cut(s) 401
MflI RGATCY 2 cut(s) 107, 399
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 2 cut(s) 144, 375
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 4 cut(s) 78, 504, 510, 565
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MseI TTAA 5 cut(s) 45, 90, 306, 378, 577
MslI CAYNNNNRTG 1 cut(s) 468
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 1 cut(s) 25
Mva1269I GAATGC 2 cut(s) 10, 425
MvaI CCWGG 1 cut(s) 25
NdeII GATC 4 cut(s) 107, 151, 399, 526
NlaIII CATG 2 cut(s) 467, 506
NlaIV GGNNCC 2 cut(s) 103, 401
PagI TCATGA 1 cut(s) 463
PceI AGGCCT 1 cut(s) 568
PctI GAATGC 2 cut(s) 10, 425
PfeI GAWTC 1 cut(s) 284
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PshBI ATTAAT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 103, 401
PsuI RGATCY 2 cut(s) 107, 399
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 5 cut(s) 45, 90, 306, 378, 577
Sau3AI GATC 4 cut(s) 107, 151, 399, 526
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 25
SfaNI GCATC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 2 cut(s) 144, 375
SseBI AGGCCT 1 cut(s) 568
SspMI CTAG 3 cut(s) 222, 510, 549
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 396
TasI AATT 2 cut(s) 144, 375
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 5 cut(s) 45, 90, 306, 378, 577
Tru9I TTAA 5 cut(s) 45, 90, 306, 378, 577
TscAI CASTG 1 cut(s) 526
TspDTI ATGAA 2 cut(s) 17, 98
TspRI CASTG 1 cut(s) 526
VspI ATTAAT 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 3 cut(s) 222, 510, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.