Rorug06G0118900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000254
Physical Location & Seq
Forward (+)
16289021 .. 16289431
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0118900.1

Sequence Viewer

Length: 411 bp
ATGGTTCGCAACCCCAACACCAACGTCCCCAAAGCTGTGAAGCTCAAGTGTCTTCCCTACGACGCCGAGCACCTCAAGCGCGACACGTGTCGCTGTCGCCACAGCCCATATCGTCTCTGTCGTCACCTTCAATTCCCACAATCACAGAAAACGAAGCTCCCAAATGGGTACTCTTCTCTCTCCCGTTTCTCAAGCTACTCCCACCTCTACTTCGATTCAAGTACATTCTTTGGCTATGATCGAGTCGTCTCCTGGCTTTTGCGGCGGAAAGCTCGGTTACTTGGTTACTTGCAGGGTCCGAACCCGAACCCGAACTCGGTCGGGTTGAGTCAGCAGCACCACCACTTGGTGTTGTCGGGTGGGAAAGACGATTTGGGTGCTTTGGCAATGTTGGAAAATAGCGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

136

Amino Acids

15.5

Weight (kDa)

9.87

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 346
AccII CGCG 2 cut(s) 81, 407
AciI CCGC 2 cut(s) 262, 265
AcvI CACGTG 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 349
AfaI GTAC 2 cut(s) 170, 223
AfiI CCNNNNNNNGG 2 cut(s) 316, 346
AflIII ACRYGT 2 cut(s) 84, 86
AgsI TTSAA 2 cut(s) 131, 219
AjnI CCWGG 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 5 cut(s) 35, 43, 157, 195, 272
AluI AGCT 5 cut(s) 35, 43, 157, 195, 272
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 2 cut(s) 119, 253
ApeKI GCWGC 1 cut(s) 334
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 296
BbrPI CACGTG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 346
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 119, 253
BisI GCNGC 2 cut(s) 263, 335
BlsI GCNGC 2 cut(s) 264, 336
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 253
BoxI GACNNNNGTC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 44
BpuEI CTTGAG 3 cut(s) 29, 59, 175
BsaAI YACGTR 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 63
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 346
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 253
BseLI CCNNNNNNNGG 2 cut(s) 316, 346
BseMI GCAATG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 346
Bsh1236I CGCG 2 cut(s) 81, 407
Bsh1285I CGRYCG 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 72
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 316, 346
BsmAI GTCTC 2 cut(s) 119, 253
BsmBI CGTCTC 2 cut(s) 119, 253
BsmFI GGGAC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 2 cut(s) 262, 265
BspFNI CGCG 2 cut(s) 81, 407
BspLI GGNNCC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 393
BssMI GATC 1 cut(s) 238
BssNI GRCGYC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 63
BstBAI YACGTR 1 cut(s) 87
BstFNI CGCG 2 cut(s) 81, 407
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 2 cut(s) 119, 253
BstMBI GATC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 2 cut(s) 76, 262
BstNI CCWGG 1 cut(s) 253
BstPAI GACNNNNGTC 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 2 cut(s) 81, 407
BstV1I GCAGC 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 44
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 296
CseI GACGC 2 cut(s) 71, 391
Csp6I GTAC 2 cut(s) 169, 222
CviJI RGCY 8 cut(s) 35, 43, 105, 157, 195, 234, 256, 272
CviKI_1 RGCY 8 cut(s) 35, 43, 105, 157, 195, 234, 256, 272
CviQI GTAC 2 cut(s) 169, 222
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DraIII CACNNNGTG 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
EciI GGCGGA 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 296
Eco72I CACGTG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 251
Esp3I CGTCTC 2 cut(s) 119, 253
FaiI YATR 2 cut(s) 109, 237
FaqI GGGAC 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 263, 335
Fsp4HI GCNGC 2 cut(s) 263, 335
GlaI GCGC 1 cut(s) 80
GluI GCNGC 2 cut(s) 263, 335
HgaI GACGC 2 cut(s) 71, 391
HhaI GCGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 63
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 3 cut(s) 215, 243, 328
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 300
Hpy99I CGWCG 2 cut(s) 65, 407
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 2 cut(s) 24, 86
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 262
HpySE526I ACGT 2 cut(s) 24, 86
Hsp92I GRCGYC 1 cut(s) 63
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 3 cut(s) 238, 265, 278
Lsp1109I GCAGC 1 cut(s) 346
MaeII ACGT 2 cut(s) 24, 86
MaeIII GTNAC 3 cut(s) 122, 276, 284
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 44, 165
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 131
MlyI GAGTC 2 cut(s) 252, 337
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 2 cut(s) 83, 215
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 2 cut(s) 81, 407
MwoI GCNNNNNNNGC 2 cut(s) 76, 262
NdeII GATC 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 297
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PfeI GAWTC 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 2 cut(s) 264, 336
PleI GAGTC 2 cut(s) 251, 336
PmaCI CACGTG 1 cut(s) 87
PmlI CACGTG 1 cut(s) 87
PpsI GAGTC 2 cut(s) 251, 336
Ppu21I YACGTR 1 cut(s) 87
PshAI GACNNNNGTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 251
PspCI CACGTG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 296
RsaI GTAC 2 cut(s) 170, 223
RsaNI GTAC 2 cut(s) 169, 222
SatI GCNGC 2 cut(s) 263, 335
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 2 cut(s) 252, 337
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 72
SinI GGWCC 1 cut(s) 296
SmlI CTYRAG 3 cut(s) 44, 74, 190
SmoI CTYRAG 3 cut(s) 44, 74, 190
Sse9I AATT 1 cut(s) 131
SsiI CCGC 2 cut(s) 262, 265
StyD4I CCNGG 1 cut(s) 251
TaiI ACGT 2 cut(s) 27, 89
TaqI TCGA 2 cut(s) 213, 241
TaqII GACCGA 1 cut(s) 307
TasI AATT 1 cut(s) 131
TatI WGTACW 1 cut(s) 221
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 1 cut(s) 215
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.