FvH4_1g29782

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000254
Physical Location & Seq
Forward (+)
23279637 .. 23281125
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29782.t1

Sequence Viewer

Length: 1128 bp
ATGGCTCAAGGCGATAATGGTCTTTGGAATAAGATCTACCAGCAGAAATACCTACATTCTAGCTCTATGTTCCAGGATAACTACAAGAAGCCTTCTAACTGTTCTCCTACCTGGACTGCTATTGTTTCTGGTGCTAGTTTGTTGAATAAAGGCATGCGTTGGAGAATTGGAAATGGTTGTACTGCCAAATTTTGGAGTGATAAATGGTCTCCTTGTGTTATTCTCAGTGATTTAGCTTTGATTGGTGCAAATATTGACCTACATGCTACTGATAAAATTATGTGGGGTGGTACTTCTTCTGGAGTTTTTTCTATAAAGTCTGCCTATAGGTTGCTTTTTGATGATTATGACTTTCAGAGTTACCCTTGGTTGAAGAATTGGTCCCTGAATATTCCCCCCAAGCTTAAAATCTTTTTATTGACTTTTGTCTCCAGTAAGCTGCTGACTAATATGCAGAGAGTTAAAAGACACCTTTCTGGGAATCCCTGCTGTCATCATTGTACAGATGCTCCTGAAACTATGTTGCATCTGTTCCGGGATTGTCCAATGGCTATGATGTGGAGGTGTAAGTGCATTTTTGAGGAGAGGTTCCGGTATCCCTATAACTTTACTGATGTCATTCTTAACTATGCTGCTGAATGGACCAAGGCATTTGCCAAGCATAAGGTGCAAAGAGTTGAACAGGTGGAAGCTTTATCTTGGATCAAACCTGTTCTTGGAGTTCAAAAATTAAATGTTGATGGTTCAAGAACCAGAGCTGGTGATATTGGTGCTGGAGGGATCATTAGGGATAGCAGTGGTTGCTGGTGTGGTGGTTTTATGGTTAATCTTGGTGTTGACGAAGTTTTTTACAAGCAGAAGCTTGGGAATTCTGATATGGATGTTCACCCTGTAGGCACCATTGTACTAAATTGTAGAGCTATGATGCAGCATTTTGACTTTGTCCAGATTAAGCATATTCATAAGGAGAGGAACATGGTGGCTGATTTATTGGCCAAAAACAGCCCTCTTAATGCTAAGGGAATCTACATTTTCAATGAGCCTCCTGATCTTGTCACTAATGCTCTGCTGGATGACATTGTTGGAGTTACAAGATGTAAGACTGTCAGTACCAACAGTGCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

42.41

Weight (kDa)

9.0

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 103 - 187 2.1e-14 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 896
AccB7I CCANNNNNTGG 1 cut(s) 192
AclWI GGATC 2 cut(s) 710, 788
AcoI YGGCCR 1 cut(s) 993
AcsI RAATTY 2 cut(s) 188, 868
AfaI GTAC 5 cut(s) 181, 292, 502, 906, 1111
AfiI CCNNNNNNNGG 2 cut(s) 192, 716
AgsI TTSAA 6 cut(s) 145, 373, 680, 725, 747, 1036
AjnI CCWGG 2 cut(s) 72, 110
AluBI AGCT 8 cut(s) 63, 236, 403, 439, 692, 758, 862, 920
AluI AGCT 8 cut(s) 63, 236, 403, 439, 692, 758, 862, 920
Alw26I GTCTC 2 cut(s) 213, 433
AlwI GGATC 2 cut(s) 710, 788
AoxI GGCC 1 cut(s) 993
ApeKI GCWGC 3 cut(s) 439, 632, 928
ApoI RAATTY 2 cut(s) 188, 868
AspS9I GGNCC 2 cut(s) 381, 642
AsuC2I CCSGG 1 cut(s) 536
AsuHPI GGTGA 2 cut(s) 773, 878
AvaII GGWCC 2 cut(s) 381, 642
BalI TGGCCA 1 cut(s) 995
BanI GGYRCC 1 cut(s) 896
BbvI GCAGC 3 cut(s) 426, 619, 940
BccI CCATC 1 cut(s) 734
BciT130I CCWGG 2 cut(s) 74, 112
BciVI GTATCC 1 cut(s) 606
BcnI CCSGG 1 cut(s) 536
BcoDI GTCTC 2 cut(s) 213, 433
BfaI CTAG 2 cut(s) 60, 135
BfmI CTRYAG 2 cut(s) 325, 891
BfuI GTATCC 1 cut(s) 606
BglII AGATCT 1 cut(s) 33
BisI GCNGC 3 cut(s) 440, 633, 929
BlsI GCNGC 3 cut(s) 441, 634, 930
Bme1390I CCNGG 3 cut(s) 74, 112, 536
Bme18I GGWCC 2 cut(s) 381, 642
BmgT120I GGNCC 2 cut(s) 381, 642
BmiI GGNNCC 3 cut(s) 383, 590, 898
BmrFI CCNGG 3 cut(s) 74, 112, 536
BmsI GCATC 3 cut(s) 496, 535, 915
BoxI GACNNNNGTC 1 cut(s) 425
BpmI CTGGAG 3 cut(s) 321, 415, 795
Bpu10I CCTNAGC 1 cut(s) 1017
BpuMI CCSGG 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 365, 645
BsaWI WCCGGW 1 cut(s) 591
BsaXI ACNNNNNCTCC 2 cut(s) 493, 523
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 716
Bse1I ACTGG 1 cut(s) 432
BseBI CCWGG 2 cut(s) 74, 112
BseDI CCNNGG 2 cut(s) 365, 645
BseGI GGATG 2 cut(s) 886, 1078
BseLI CCNNNNNNNGG 2 cut(s) 192, 716
BseMII CTCAG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 3 cut(s) 426, 619, 940
BshFI GGCC 1 cut(s) 995
BshNI GGYRCC 1 cut(s) 896
BsiSI CCGG 2 cut(s) 535, 592
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 192, 716
BsmAI GTCTC 2 cut(s) 213, 433
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 1 cut(s) 995
Bso31I GGTCTC 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 500
Bsp143I GATC 4 cut(s) 33, 702, 780, 1048
BspANI GGCC 1 cut(s) 995
BspCNI CTCAG 1 cut(s) 237
BspLI GGNNCC 3 cut(s) 383, 590, 898
BspPI GGATC 2 cut(s) 710, 788
BspT107I GGYRCC 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 213
BsrGI TGTACA 1 cut(s) 500
BsrI ACTGG 1 cut(s) 432
BssECI CCNNGG 2 cut(s) 365, 645
BssMI GATC 4 cut(s) 33, 702, 780, 1048
BssT1I CCWWGG 2 cut(s) 365, 645
Bst2UI CCWGG 2 cut(s) 74, 112
Bst4CI ACNGT 3 cut(s) 101, 1105, 1118
BstAPI GCANNNNNTGC 2 cut(s) 667, 801
BstAUI TGTACA 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 224, 1017
BstF5I GGATG 2 cut(s) 886, 1078
BstKTI GATC 4 cut(s) 36, 705, 783, 1051
BstMAI GTCTC 2 cut(s) 213, 433
BstMBI GATC 4 cut(s) 33, 702, 780, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 667, 801
BstNI CCWGG 2 cut(s) 74, 112
BstNSI RCATGY 2 cut(s) 157, 266
BstPAI GACNNNNGTC 1 cut(s) 425
BstSCI CCNGG 3 cut(s) 72, 110, 534
BstSFI CTRYAG 2 cut(s) 325, 891
BstV1I GCAGC 3 cut(s) 426, 619, 940
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 1 cut(s) 995
BtsCI GGATG 2 cut(s) 886, 1078
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 3 cut(s) 232, 802, 1123
Cac8I GCNNGC 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 381, 642
Csp6I GTAC 5 cut(s) 180, 291, 501, 905, 1110
CviAII CATG 3 cut(s) 154, 263, 976
CviQI GTAC 5 cut(s) 180, 291, 501, 905, 1110
DdeI CTNAG 2 cut(s) 224, 1017
DpnI GATC 4 cut(s) 35, 704, 782, 1050
DpnII GATC 4 cut(s) 33, 702, 780, 1048
EaeI YGGCCR 1 cut(s) 993
Eco130I CCWWGG 2 cut(s) 365, 645
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 381, 642
EcoRI GAATTC 1 cut(s) 868
EcoRII CCWGG 2 cut(s) 72, 110
EcoT14I CCWWGG 2 cut(s) 365, 645
ErhI CCWWGG 2 cut(s) 365, 645
FaeI CATG 3 cut(s) 157, 266, 979
FaqI GGGAC 1 cut(s) 367
FatI CATG 3 cut(s) 153, 262, 975
Fnu4HI GCNGC 3 cut(s) 440, 633, 929
FokI GGATG 2 cut(s) 893, 1085
Fsp4HI GCNGC 3 cut(s) 440, 633, 929
FspBI CTAG 2 cut(s) 60, 135
GluI GCNGC 3 cut(s) 440, 633, 929
GsuI CTGGAG 3 cut(s) 321, 415, 795
HaeIII GGCC 1 cut(s) 995
HapII CCGG 2 cut(s) 535, 592
Hin1II CATG 3 cut(s) 157, 266, 979
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 3 cut(s) 401, 690, 860
HinfI GANTC 2 cut(s) 481, 1023
HpaII CCGG 2 cut(s) 535, 592
HphI GGTGA 2 cut(s) 773, 878
Hpy166II GTNNAC 2 cut(s) 838, 886
Hpy188I TCNGA 2 cut(s) 357, 874
Hpy188III TCNNGA 5 cut(s) 300, 512, 747, 946, 1046
Hpy8I GTNNAC 2 cut(s) 838, 886
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 3 cut(s) 101, 1105, 1118
HpyCH4V TGCA 6 cut(s) 248, 454, 526, 573, 670, 928
HpyF10VI GCNNNNNNNGC 2 cut(s) 667, 801
HpyF3I CTNAG 2 cut(s) 224, 1017
Hsp92II CATG 3 cut(s) 157, 266, 979
Kzo9I GATC 4 cut(s) 33, 702, 780, 1048
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 3 cut(s) 426, 619, 940
LweI GCATC 3 cut(s) 496, 535, 915
MaeI CTAG 2 cut(s) 60, 135
MaeIII GTNAC 3 cut(s) 359, 1054, 1087
MalI GATC 4 cut(s) 35, 704, 782, 1050
MboI GATC 4 cut(s) 33, 702, 780, 1048
MboII GAAGA 2 cut(s) 288, 385
MflI RGATCY 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 995
MluCI AATT 7 cut(s) 165, 188, 276, 376, 728, 868, 910
MluNI TGGCCA 1 cut(s) 995
MmeI TCCRAC 2 cut(s) 140, 1063
MnlI CCTC 7 cut(s) 555, 574, 579, 770, 963, 1017, 1053
Mox20I TGGCCA 1 cut(s) 995
MscI TGGCCA 1 cut(s) 995
MseI TTAA 8 cut(s) 405, 462, 624, 731, 825, 951, 1011, 1126
Msp20I TGGCCA 1 cut(s) 995
MspI CCGG 2 cut(s) 535, 592
MspR9I CCNGG 3 cut(s) 74, 112, 536
MvaI CCWGG 2 cut(s) 74, 112
MwoI GCNNNNNNNGC 2 cut(s) 667, 801
NciI CCSGG 1 cut(s) 536
NdeII GATC 4 cut(s) 33, 702, 780, 1048
NlaIII CATG 3 cut(s) 157, 266, 979
NlaIV GGNNCC 3 cut(s) 383, 590, 898
NmuCI GTSAC 1 cut(s) 1054
NspI RCATGY 2 cut(s) 157, 266
PaeI GCATGC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 481, 1023
PflFI GACNNNGTC 1 cut(s) 941
PflMI CCANNNNNTGG 1 cut(s) 192
PfoI TCCNGGA 2 cut(s) 72, 534
PkrI GCNGC 3 cut(s) 441, 634, 930
PshAI GACNNNNGTC 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 72, 110
PspGI CCWGG 2 cut(s) 72, 110
PspN4I GGNNCC 3 cut(s) 383, 590, 898
PspPI GGNCC 2 cut(s) 381, 642
PsuI RGATCY 1 cut(s) 33
PsyI GACNNNGTC 1 cut(s) 941
RsaI GTAC 5 cut(s) 181, 292, 502, 906, 1111
RsaNI GTAC 5 cut(s) 180, 291, 501, 905, 1110
SaqAI TTAA 8 cut(s) 405, 462, 624, 731, 825, 951, 1011, 1126
SatI GCNGC 3 cut(s) 440, 633, 929
Sau3AI GATC 4 cut(s) 33, 702, 780, 1048
Sau96I GGNCC 2 cut(s) 381, 642
ScrFI CCNGG 3 cut(s) 74, 112, 536
SfaNI GCATC 3 cut(s) 496, 535, 915
SfcI CTRYAG 2 cut(s) 325, 891
SinI GGWCC 2 cut(s) 381, 642
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SphI GCATGC 1 cut(s) 157
Sse9I AATT 7 cut(s) 165, 188, 276, 376, 728, 868, 910
SspI AATATT 2 cut(s) 253, 391
SspMI CTAG 2 cut(s) 60, 135
StyD4I CCNGG 3 cut(s) 72, 110, 534
StyI CCWWGG 2 cut(s) 365, 645
TaaI ACNGT 3 cut(s) 101, 1105, 1118
TasI AATT 7 cut(s) 165, 188, 276, 376, 728, 868, 910
TatI WGTACW 3 cut(s) 179, 500, 904
TfiI GAWTC 2 cut(s) 481, 1023
Tru1I TTAA 8 cut(s) 405, 462, 624, 731, 825, 951, 1011, 1126
Tru9I TTAA 8 cut(s) 405, 462, 624, 731, 825, 951, 1011, 1126
TscAI CASTG 3 cut(s) 232, 802, 1123
TseFI GTSAC 1 cut(s) 1054
TseI GCWGC 3 cut(s) 439, 632, 928
Tsp45I GTSAC 1 cut(s) 1054
TspDTI ATGAA 1 cut(s) 950
TspRI CASTG 3 cut(s) 232, 802, 1123
Tth111I GACNNNGTC 1 cut(s) 941
Van91I CCANNNNNTGG 1 cut(s) 192
VpaK11BI GGWCC 2 cut(s) 381, 642
XapI RAATTY 2 cut(s) 188, 868
XceI RCATGY 2 cut(s) 157, 266
XspI CTAG 2 cut(s) 60, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.