FvH4_6g13733

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000254
Physical Location & Seq
Forward (+)
8383727 .. 8388853
5127 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13733.t1

Sequence Viewer

Length: 942 bp
ATGTCGGATGAGGTTTCTCCTACTTTTCTTGAAAGTTTTGGGAATCGTTTTGCTACTGGTAGCACATATAAGGCTGCGGCTGCATTATTACCGGCATTATCATTCTCCATCCCTGGGGCCAAAGTAGTAATGGATTGTGATTACAACCTCCTTACTTGGAAAAAGCCTTCTGAAAATTTTTACAAGCTCAATGTGGATGGTTTTCAAATTAATCTTGGTATTGGTGTCATTGTGGATGCTGAAGTCTGGGGCATCTATTTTGGTTTAAAACTTGCTAGAAACTTAAACATTATGCATCTGGAGATTGAGTCTGATTCTGCCATTCTCATTAATCTTCTCCAACGTGTTGATCTCTCTTGTCATCCTCTTGGATCTCTCATTGTTGGCTGCCATTTTCTCAGCTCCAACATGGAAAACACCAAATTTAGTCATATATTCAGGAAATGTAACATGATTACTGATTCCCTCGCTAAGATGAGTATCAATCATGCTCCTGGTCTCATTATTCTGGAAGAGCCTCCTATCCATGCTGTTTCTGCTTACCTTGATGACTTGAATGGTGTTGTTAGAGGTTGGAAAACTGGGGATCTACACGGCGAGGTCGACACTTCCGGTGGTGCCGAGGCGAAGTTGCTGACAAAGCTGATCGATTCGGTTTGTAAATGCCATGATTCGGGAGACGATCATATAGAGCTGCTGGTGCTGAAGACGATGCTATCAGCAGTGATGTCGATTTCGACTAGTTGGGTTTTAAGTGATGGTGTTGGACCGGTTGGGGAAAAGCCCAAATCCTTTCTCTTCTCTCTCTTCCCTCCCGATTCTCTCTCCCTCTCCCTCCGCCGGATTTTCTTCCAGGCCGTTCGCCGCCGTCCGGTCGCCTCTGACCGCCGGGCCGGTCCCAAACGGACGGCCATCGACCCAGCCTTCTTCCTGGACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

314

Amino Acids

34.37

Weight (kDa)

6.31

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 79 - 159 9.8e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 617
AccI GTMKAC 1 cut(s) 603
AciI CCGC 4 cut(s) 77, 838, 865, 886
AclWI GGATC 2 cut(s) 379, 594
AcoI YGGCCR 1 cut(s) 909
AcsI RAATTY 2 cut(s) 175, 422
AcuI CTGAAG 2 cut(s) 261, 725
AfiI CCNNNNNNNGG 4 cut(s) 114, 673, 840, 871
AflIII ACRYGT 1 cut(s) 343
AgeI ACCGGT 2 cut(s) 769, 936
AgsI TTSAA 3 cut(s) 32, 206, 556
AhlI ACTAGT 1 cut(s) 740
AjnI CCWGG 4 cut(s) 112, 493, 852, 930
AluBI AGCT 4 cut(s) 187, 402, 643, 694
AluI AGCT 4 cut(s) 187, 402, 643, 694
Alw26I GTCTC 2 cut(s) 503, 672
AlwI GGATC 2 cut(s) 379, 594
AoxI GGCC 4 cut(s) 117, 855, 891, 909
ApeKI GCWGC 4 cut(s) 74, 80, 387, 694
ApoI RAATTY 2 cut(s) 175, 422
AseI ATTAAT 2 cut(s) 210, 330
AsiGI ACCGGT 2 cut(s) 769, 936
AspS9I GGNCC 5 cut(s) 117, 767, 891, 896, 934
AsuC2I CCSGG 1 cut(s) 890
AvaII GGWCC 3 cut(s) 767, 896, 934
BanI GGYRCC 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 713
BbvI GCAGC 4 cut(s) 61, 67, 374, 681
BccI CCATC 4 cut(s) 116, 191, 752, 920
BceAI ACGGC 4 cut(s) 610, 842, 852, 924
BcgI CGANNNNNNTGC 2 cut(s) 711, 745
BciT130I CCWGG 4 cut(s) 114, 495, 854, 932
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 2 cut(s) 503, 672
BcuI ACTAGT 1 cut(s) 740
BfaI CTAG 2 cut(s) 276, 741
BisI GCNGC 6 cut(s) 75, 78, 81, 388, 695, 865
BlsI GCNGC 6 cut(s) 76, 79, 82, 389, 696, 866
Bme1390I CCNGG 5 cut(s) 114, 495, 854, 890, 932
Bme18I GGWCC 3 cut(s) 767, 896, 934
BmgT120I GGNCC 5 cut(s) 117, 767, 891, 896, 934
BmiI GGNNCC 3 cut(s) 118, 619, 898
BmrFI CCNGG 5 cut(s) 114, 495, 854, 890, 932
BmrI ACTGGG 1 cut(s) 591
BmsI GCATC 4 cut(s) 226, 261, 304, 702
BmuI ACTGGG 1 cut(s) 591
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 890
Bsa29I ATCGAT 1 cut(s) 648
BsaBI GATNNNNATC 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 112, 113, 621
BsaWI WCCGGW 4 cut(s) 611, 769, 871, 936
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 673, 840, 871
Bse118I RCCGGY 4 cut(s) 91, 769, 893, 936
Bse1I ACTGG 2 cut(s) 61, 586
Bse8I GATNNNNATC 1 cut(s) 479
BseBI CCWGG 4 cut(s) 114, 495, 854, 932
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 112, 113, 621
BseGI GGATG 5 cut(s) 13, 108, 202, 241, 361
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 4 cut(s) 114, 673, 840, 871
BseMII CTCAG 1 cut(s) 412
BseNI ACTGG 2 cut(s) 61, 586
BseXI GCAGC 4 cut(s) 61, 67, 374, 681
BseYI CCCAGC 1 cut(s) 919
Bsh1285I CGRYCG 1 cut(s) 876
BshFI GGCC 4 cut(s) 119, 857, 893, 911
BshNI GGYRCC 1 cut(s) 617
BshTI ACCGGT 2 cut(s) 769, 936
BshVI ATCGAT 1 cut(s) 648
BsiEI CGRYCG 1 cut(s) 876
BsiSI CCGG 8 cut(s) 92, 612, 770, 841, 872, 889, 894, 937
BslFI GGGAC 1 cut(s) 882
BslI CCNNNNNNNGG 4 cut(s) 114, 673, 840, 871
BsmAI GTCTC 2 cut(s) 503, 672
BsmBI CGTCTC 1 cut(s) 672
BsmFI GGGAC 1 cut(s) 882
BsnI GGCC 4 cut(s) 119, 857, 893, 911
Bso31I GGTCTC 1 cut(s) 503
Bsp143I GATC 5 cut(s) 349, 371, 586, 645, 682
BspACI CCGC 4 cut(s) 77, 838, 865, 886
BspANI GGCC 4 cut(s) 119, 857, 893, 911
BspCNI CTCAG 1 cut(s) 411
BspDI ATCGAT 1 cut(s) 648
BspLI GGNNCC 3 cut(s) 118, 619, 898
BspPI GGATC 2 cut(s) 379, 594
BspQI GCTCTTC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 617
BspTNI GGTCTC 1 cut(s) 503
BsrFI RCCGGY 4 cut(s) 91, 769, 893, 936
BsrI ACTGG 2 cut(s) 61, 586
BssAI RCCGGY 4 cut(s) 91, 769, 893, 936
BssECI CCNNGG 3 cut(s) 112, 113, 621
BssMI GATC 5 cut(s) 349, 371, 586, 645, 682
Bst2UI CCWGG 4 cut(s) 114, 495, 854, 932
Bst6I CTCTTC 3 cut(s) 507, 803, 812
BstDEI CTNAG 2 cut(s) 398, 471
BstF5I GGATG 5 cut(s) 13, 108, 202, 241, 361
BstKTI GATC 5 cut(s) 352, 374, 589, 648, 685
BstMAI GTCTC 2 cut(s) 503, 672
BstMBI GATC 5 cut(s) 349, 371, 586, 645, 682
BstMCI CGRYCG 1 cut(s) 876
BstMWI GCNNNNNNNGC 4 cut(s) 80, 536, 640, 700
BstNI CCWGG 4 cut(s) 114, 495, 854, 932
BstSCI CCNGG 5 cut(s) 112, 493, 852, 888, 930
BstV1I GCAGC 4 cut(s) 61, 67, 374, 681
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 2 cut(s) 371, 586
BstYI RGATCY 2 cut(s) 371, 586
Bsu15I ATCGAT 1 cut(s) 648
BsuRI GGCC 4 cut(s) 119, 857, 893, 911
BsuTUI ATCGAT 1 cut(s) 648
BtsCI GGATG 5 cut(s) 13, 108, 202, 241, 361
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 1 cut(s) 729
Cfr10I RCCGGY 4 cut(s) 91, 769, 893, 936
Cfr13I GGNCC 5 cut(s) 117, 767, 891, 896, 934
ClaI ATCGAT 1 cut(s) 648
CspAI ACCGGT 2 cut(s) 769, 936
CviAII CATG 5 cut(s) 409, 451, 488, 527, 668
DdeI CTNAG 2 cut(s) 398, 471
DpnI GATC 5 cut(s) 351, 373, 588, 647, 684
DpnII GATC 5 cut(s) 349, 371, 586, 645, 682
DraI TTTAAA 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 909
Eam1104I CTCTTC 3 cut(s) 507, 803, 812
EarI CTCTTC 3 cut(s) 507, 803, 812
EciI GGCGGA 1 cut(s) 827
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 3 cut(s) 767, 896, 934
Eco57I CTGAAG 2 cut(s) 261, 725
EcoRII CCWGG 4 cut(s) 112, 493, 852, 930
EcoT22I ATGCAT 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 672
FaeI CATG 5 cut(s) 412, 454, 491, 530, 671
FaqI GGGAC 1 cut(s) 882
FatI CATG 5 cut(s) 408, 450, 487, 526, 667
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 6 cut(s) 75, 78, 81, 388, 695, 865
FokI GGATG 5 cut(s) 20, 95, 209, 248, 348
Fsp4HI GCNGC 6 cut(s) 75, 78, 81, 388, 695, 865
FspBI CTAG 2 cut(s) 276, 741
GluI GCNGC 6 cut(s) 75, 78, 81, 388, 695, 865
GsaI CCCAGC 1 cut(s) 923
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 4 cut(s) 119, 857, 893, 911
HapII CCGG 8 cut(s) 92, 612, 770, 841, 872, 889, 894, 937
Hin1II CATG 5 cut(s) 412, 454, 491, 530, 671
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 7 cut(s) 43, 308, 314, 461, 650, 671, 818
HpaII CCGG 8 cut(s) 92, 612, 770, 841, 872, 889, 894, 937
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 4 cut(s) 7, 172, 313, 883
Hpy188III TCNNGA 6 cut(s) 29, 299, 439, 509, 675, 815
Hpy8I GTNNAC 1 cut(s) 604
HpyAV CCTTC 2 cut(s) 177, 934
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 2 cut(s) 83, 295
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 536, 640, 700
HpyF3I CTNAG 2 cut(s) 398, 471
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 412, 454, 491, 530, 671
Kzo9I GATC 5 cut(s) 349, 371, 586, 645, 682
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 2 cut(s) 407, 496
Lsp1109I GCAGC 4 cut(s) 61, 67, 374, 681
LweI GCATC 4 cut(s) 226, 261, 304, 702
MaeI CTAG 2 cut(s) 276, 741
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 446
MalI GATC 5 cut(s) 351, 373, 588, 647, 684
MboI GATC 5 cut(s) 349, 371, 586, 645, 682
MboII GAAGA 7 cut(s) 326, 524, 718, 790, 799, 841, 919
MflI RGATCY 2 cut(s) 371, 586
MluCI AATT 3 cut(s) 175, 207, 422
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 4 cut(s) 364, 429, 554, 745
Mph1103I ATGCAT 1 cut(s) 297
MseI TTAA 5 cut(s) 210, 266, 284, 330, 752
MspI CCGG 8 cut(s) 92, 612, 770, 841, 872, 889, 894, 937
MspR9I CCNGG 5 cut(s) 114, 495, 854, 890, 932
MvaI CCWGG 4 cut(s) 114, 495, 854, 932
MwoI GCNNNNNNNGC 4 cut(s) 80, 536, 640, 700
NciI CCSGG 1 cut(s) 890
NdeII GATC 5 cut(s) 349, 371, 586, 645, 682
NlaIII CATG 5 cut(s) 412, 454, 491, 530, 671
NlaIV GGNNCC 3 cut(s) 118, 619, 898
NmeAIII GCCGAG 1 cut(s) 646
NsiI ATGCAT 1 cut(s) 297
PasI CCCWGGG 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PfeI GAWTC 6 cut(s) 43, 314, 461, 650, 671, 818
PfoI TCCNGGA 1 cut(s) 930
PinAI ACCGGT 2 cut(s) 769, 936
PkrI GCNGC 6 cut(s) 76, 79, 82, 389, 696, 866
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PshBI ATTAAT 2 cut(s) 210, 330
Psp6I CCWGG 4 cut(s) 112, 493, 852, 930
PspFI CCCAGC 1 cut(s) 919
PspGI CCWGG 4 cut(s) 112, 493, 852, 930
PspN4I GGNNCC 3 cut(s) 118, 619, 898
PspPI GGNCC 5 cut(s) 117, 767, 891, 896, 934
PsuI RGATCY 2 cut(s) 371, 586
SalI GTCGAC 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 5 cut(s) 210, 266, 284, 330, 752
SatI GCNGC 6 cut(s) 75, 78, 81, 388, 695, 865
Sau3AI GATC 5 cut(s) 349, 371, 586, 645, 682
Sau96I GGNCC 5 cut(s) 117, 767, 891, 896, 934
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 5 cut(s) 114, 495, 854, 890, 932
SfaNI GCATC 4 cut(s) 226, 261, 304, 702
SinI GGWCC 3 cut(s) 767, 896, 934
SpeI ACTAGT 1 cut(s) 740
Sse9I AATT 3 cut(s) 175, 207, 422
SsiI CCGC 4 cut(s) 77, 838, 865, 886
SspMI CTAG 2 cut(s) 276, 741
StyD4I CCNGG 5 cut(s) 112, 493, 852, 888, 930
TaiI ACGT 1 cut(s) 346
TaqI TCGA 5 cut(s) 603, 648, 731, 737, 915
TasI AATT 3 cut(s) 175, 207, 422
TauI GCSGC 2 cut(s) 80, 867
TfiI GAWTC 6 cut(s) 43, 314, 461, 650, 671, 818
Tru1I TTAA 5 cut(s) 210, 266, 284, 330, 752
Tru9I TTAA 5 cut(s) 210, 266, 284, 330, 752
TscAI CASTG 1 cut(s) 729
TseI GCWGC 4 cut(s) 74, 80, 387, 694
TspGWI ACGGA 1 cut(s) 919
TspRI CASTG 1 cut(s) 729
VpaK11BI GGWCC 3 cut(s) 767, 896, 934
VspI ATTAAT 2 cut(s) 210, 330
XapI RAATTY 2 cut(s) 175, 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 603
XspI CTAG 2 cut(s) 276, 741
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.