Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 10 - 129 | 1.4e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 96 |
| AcsI | RAATTY | 2 cut(s) | 141, 307 |
| AfaI | GTAC | 2 cut(s) | 49, 237 |
| AgsI | TTSAA | 3 cut(s) | 22, 119, 386 |
| AluBI | AGCT | 5 cut(s) | 25, 71, 188, 196, 329 |
| AluI | AGCT | 5 cut(s) | 25, 71, 188, 196, 329 |
| AlwI | GGATC | 1 cut(s) | 96 |
| AoxI | GGCC | 2 cut(s) | 409, 435 |
| ApeKI | GCWGC | 1 cut(s) | 196 |
| ApoI | RAATTY | 2 cut(s) | 141, 307 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 17, 49 |
| AspS9I | GGNCC | 1 cut(s) | 436 |
| BbvCI | CCTCAGC | 1 cut(s) | 153 |
| BbvI | GCAGC | 1 cut(s) | 183 |
| BccI | CCATC | 1 cut(s) | 29 |
| BfaI | CTAG | 2 cut(s) | 42, 72 |
| BfmI | CTRYAG | 2 cut(s) | 197, 369 |
| BisI | GCNGC | 1 cut(s) | 197 |
| BlsI | GCNGC | 1 cut(s) | 198 |
| BmcAI | AGTACT | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 1 cut(s) | 436 |
| BmsI | GCATC | 3 cut(s) | 139, 261, 364 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 212, 244 |
| Bpu10I | CCTNAGC | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 2 cut(s) | 232, 287 |
| Bse1I | ACTGG | 1 cut(s) | 253 |
| BseMII | CTCAG | 3 cut(s) | 144, 206, 347 |
| BseNI | ACTGG | 1 cut(s) | 253 |
| BseXI | GCAGC | 1 cut(s) | 183 |
| BshFI | GGCC | 2 cut(s) | 411, 437 |
| BsnI | GGCC | 2 cut(s) | 411, 437 |
| Bsp143I | GATC | 2 cut(s) | 88, 336 |
| BspANI | GGCC | 2 cut(s) | 411, 437 |
| BspCNI | CTCAG | 3 cut(s) | 145, 205, 346 |
| BspMAI | CTGCAG | 2 cut(s) | 201, 373 |
| BspPI | GGATC | 1 cut(s) | 96 |
| BsrI | ACTGG | 1 cut(s) | 253 |
| BssMI | GATC | 2 cut(s) | 88, 336 |
| Bst6I | CTCTTC | 1 cut(s) | 254 |
| BstDEI | CTNAG | 3 cut(s) | 153, 192, 333 |
| BstKTI | GATC | 2 cut(s) | 91, 339 |
| BstMBI | GATC | 2 cut(s) | 88, 336 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 326 |
| BstSFI | CTRYAG | 2 cut(s) | 197, 369 |
| BstV1I | GCAGC | 1 cut(s) | 183 |
| BsuRI | GGCC | 2 cut(s) | 411, 437 |
| BtsIMutI | CAGTG | 1 cut(s) | 260 |
| Cfr13I | GGNCC | 1 cut(s) | 436 |
| Csp6I | GTAC | 2 cut(s) | 48, 236 |
| CviAII | CATG | 4 cut(s) | 159, 178, 313, 440 |
| CviJI | RGCY | 9 cut(s) | 25, 39, 71, 188, 196, 285, 329, 411, 437 |
| CviKI_1 | RGCY | 9 cut(s) | 25, 39, 71, 188, 196, 285, 329, 411, 437 |
| CviQI | GTAC | 2 cut(s) | 48, 236 |
| DdeI | CTNAG | 3 cut(s) | 153, 192, 333 |
| DpnI | GATC | 2 cut(s) | 90, 338 |
| DpnII | GATC | 2 cut(s) | 88, 336 |
| Eam1104I | CTCTTC | 1 cut(s) | 254 |
| EarI | CTCTTC | 1 cut(s) | 254 |
| Eco147I | AGGCCT | 1 cut(s) | 411 |
| FaeI | CATG | 4 cut(s) | 162, 181, 316, 443 |
| FaiI | YATR | 9 cut(s) | 83, 160, 174, 179, 314, 345, 365, 402, 441 |
| FatI | CATG | 4 cut(s) | 158, 177, 312, 439 |
| Fnu4HI | GCNGC | 1 cut(s) | 197 |
| Fsp4HI | GCNGC | 1 cut(s) | 197 |
| FspBI | CTAG | 2 cut(s) | 42, 72 |
| GluI | GCNGC | 1 cut(s) | 197 |
| HaeIII | GGCC | 2 cut(s) | 411, 437 |
| Hin1II | CATG | 4 cut(s) | 162, 181, 316, 443 |
| HinfI | GANTC | 4 cut(s) | 78, 221, 227, 356 |
| Hpy188I | TCNGA | 2 cut(s) | 226, 336 |
| Hpy188III | TCNNGA | 4 cut(s) | 42, 57, 146, 266 |
| HpyAV | CCTTC | 1 cut(s) | 441 |
| HpyCH4V | TGCA | 3 cut(s) | 199, 274, 371 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 326 |
| HpyF3I | CTNAG | 3 cut(s) | 153, 192, 333 |
| Hsp92II | CATG | 4 cut(s) | 162, 181, 316, 443 |
| Kzo9I | GATC | 2 cut(s) | 88, 336 |
| LmnI | GCTCC | 1 cut(s) | 68 |
| LpnPI | CCDG | 5 cut(s) | 42, 96, 266, 337, 425 |
| Lsp1109I | GCAGC | 1 cut(s) | 183 |
| LweI | GCATC | 3 cut(s) | 139, 261, 364 |
| MaeI | CTAG | 2 cut(s) | 42, 72 |
| MaeIII | GTNAC | 1 cut(s) | 442 |
| MalI | GATC | 2 cut(s) | 90, 338 |
| MboI | GATC | 2 cut(s) | 88, 336 |
| MboII | GAAGA | 1 cut(s) | 241 |
| MluCI | AATT | 5 cut(s) | 13, 141, 182, 307, 404 |
| MlyI | GAGTC | 3 cut(s) | 87, 221, 230 |
| MmeI | TCCRAC | 2 cut(s) | 83, 268 |
| MnlI | CCTC | 4 cut(s) | 64, 89, 148, 288 |
| MroXI | GAANNNNTTC | 2 cut(s) | 17, 49 |
| MseI | TTAA | 4 cut(s) | 204, 294, 323, 448 |
| MspA1I | CMGCKG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 326 |
| NdeII | GATC | 2 cut(s) | 88, 336 |
| NlaIII | CATG | 4 cut(s) | 162, 181, 316, 443 |
| PceI | AGGCCT | 1 cut(s) | 411 |
| PdmI | GAANNNNTTC | 2 cut(s) | 17, 49 |
| PfeI | GAWTC | 1 cut(s) | 356 |
| PkrI | GCNGC | 1 cut(s) | 198 |
| PleI | GAGTC | 3 cut(s) | 86, 221, 229 |
| PpsI | GAGTC | 3 cut(s) | 86, 221, 229 |
| PspPI | GGNCC | 1 cut(s) | 436 |
| PstI | CTGCAG | 2 cut(s) | 201, 373 |
| PvuII | CAGCTG | 1 cut(s) | 196 |
| RsaI | GTAC | 2 cut(s) | 49, 237 |
| RsaNI | GTAC | 2 cut(s) | 48, 236 |
| SaqAI | TTAA | 4 cut(s) | 204, 294, 323, 448 |
| SatI | GCNGC | 1 cut(s) | 197 |
| Sau3AI | GATC | 2 cut(s) | 88, 336 |
| Sau96I | GGNCC | 1 cut(s) | 436 |
| ScaI | AGTACT | 1 cut(s) | 49 |
| SchI | GAGTC | 3 cut(s) | 87, 221, 230 |
| SetI | ASST | 6 cut(s) | 27, 73, 190, 198, 301, 331 |
| SfaNI | GCATC | 3 cut(s) | 139, 261, 364 |
| SfcI | CTRYAG | 2 cut(s) | 197, 369 |
| SmlI | CTYRAG | 2 cut(s) | 211, 266 |
| SmoI | CTYRAG | 2 cut(s) | 211, 266 |
| Sse9I | AATT | 5 cut(s) | 13, 141, 182, 307, 404 |
| SseBI | AGGCCT | 1 cut(s) | 411 |
| SspMI | CTAG | 2 cut(s) | 42, 72 |
| StuI | AGGCCT | 1 cut(s) | 411 |
| TasI | AATT | 5 cut(s) | 13, 141, 182, 307, 404 |
| TatI | WGTACW | 2 cut(s) | 47, 235 |
| TfiI | GAWTC | 1 cut(s) | 356 |
| Tru1I | TTAA | 4 cut(s) | 204, 294, 323, 448 |
| Tru9I | TTAA | 4 cut(s) | 204, 294, 323, 448 |
| TscAI | CASTG | 1 cut(s) | 260 |
| TseI | GCWGC | 1 cut(s) | 196 |
| TspDTI | ATGAA | 3 cut(s) | 194, 301, 389 |
| TspRI | CASTG | 1 cut(s) | 260 |
| XapI | RAATTY | 2 cut(s) | 141, 307 |
| XbaI | TCTAGA | 1 cut(s) | 41 |
| XmnI | GAANNNNTTC | 2 cut(s) | 17, 49 |
| XspI | CTAG | 2 cut(s) | 42, 72 |
| ZrmI | AGTACT | 1 cut(s) | 49 |