Rroxscaffold_2G00126610

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000254
Physical Location & Seq
Reverse (-)
61971842 .. 61975257
3416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126610.1

Sequence Viewer

Length: 267 bp
ATGCTCTCTTGGACTAAACCTGCTATTGGTGCTCATAAACTCAATGTTGATGGTTCACGAACGAGTAATGGTGCTATTGGAGCTGGGGGACTTATTAGGGATGATGTTTGTTGTTGGTGTGGTGGCTTTATGGTTTGCATTGGTCCTGGTGATGTCCTTCAAGCCGAGGCTTGGGACCTTTTTCATGGTCTCCGGTTGGCTTTGAGCCTAAGCATTATGAAGTTAGAAGTGGAATCGACTCGCTATATTGGTGAATCTCATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.43

Weight (kDa)

5.48

Isoelectric Point (pI)

18.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 15 - 79 4.8e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 26, 171
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 143, 175
AsuHPI GGTGA 2 cut(s) 161, 263
AvaII GGWCC 2 cut(s) 143, 175
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 2 cut(s) 143, 175
BmgT120I GGNCC 2 cut(s) 143, 175
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 171
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 26, 171
BseYI CCCAGC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 2 cut(s) 102, 188
BslI CCNNNNNNNGG 2 cut(s) 26, 171
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 102, 188
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 34
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 194
BstMWI GCNNNNNNNGC 2 cut(s) 29, 80
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 143, 175
CviAII CATG 2 cut(s) 185, 260
CviJI RGCY 6 cut(s) 83, 126, 164, 170, 200, 207
CviKI_1 RGCY 6 cut(s) 83, 126, 164, 170, 200, 207
DdeI CTNAG 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 143, 175
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 2 cut(s) 188, 263
FaiI YATR 6 cut(s) 36, 131, 186, 218, 246, 261
FaqI GGGAC 2 cut(s) 102, 188
FatI CATG 2 cut(s) 184, 259
FokI GGATG 1 cut(s) 113
GsaI CCCAGC 1 cut(s) 87
HapII CCGG 1 cut(s) 193
Hin1II CATG 2 cut(s) 188, 263
HinfI GANTC 3 cut(s) 233, 238, 254
HpaII CCGG 1 cut(s) 193
HphI GGTGA 2 cut(s) 161, 263
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 2 cut(s) 57, 260
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 80
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 2 cut(s) 188, 263
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 5 cut(s) 33, 69, 132, 159, 206
MhlI GDGCHC 1 cut(s) 34
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 1 cut(s) 160
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 29, 80
NlaIII CATG 2 cut(s) 188, 263
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 190
PagI TCATGA 1 cut(s) 259
PfeI GAWTC 2 cut(s) 233, 254
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 143, 175
PspPPI RGGWCCY 1 cut(s) 175
Sau96I GGNCC 2 cut(s) 143, 175
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 34
SetI ASST 3 cut(s) 22, 85, 180
SinI GGWCC 2 cut(s) 143, 175
StyD4I CCNGG 1 cut(s) 145
TaqI TCGA 1 cut(s) 236
TfiI GAWTC 2 cut(s) 233, 254
TspDTI ATGAA 2 cut(s) 173, 233
VpaK11BI GGWCC 2 cut(s) 143, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.