Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 7 - 126 | 6.1e-27 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 71 |
| AcsI | RAATTY | 2 cut(s) | 76, 223 |
| AcuI | CTGAAG | 2 cut(s) | 119, 162 |
| AgsI | TTSAA | 2 cut(s) | 13, 241 |
| AjnI | CCWGG | 1 cut(s) | 146 |
| AluBI | AGCT | 1 cut(s) | 172 |
| AluI | AGCT | 1 cut(s) | 172 |
| ApeKI | GCWGC | 2 cut(s) | 169, 385 |
| ApoI | RAATTY | 2 cut(s) | 76, 223 |
| AsuHPI | GGTGA | 4 cut(s) | 98, 121, 137, 241 |
| BbvI | GCAGC | 2 cut(s) | 181, 397 |
| BccI | CCATC | 1 cut(s) | 20 |
| BciT130I | CCWGG | 1 cut(s) | 148 |
| BfaI | CTAG | 3 cut(s) | 423, 468, 502 |
| BfmI | CTRYAG | 1 cut(s) | 167 |
| BisI | GCNGC | 2 cut(s) | 170, 386 |
| BlsI | GCNGC | 2 cut(s) | 171, 387 |
| Bme1390I | CCNGG | 1 cut(s) | 148 |
| BmrFI | CCNGG | 1 cut(s) | 148 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaBI | GATNNNNATC | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 2 cut(s) | 147, 473 |
| Bse8I | GATNNNNATC | 1 cut(s) | 261 |
| BseBI | CCWGG | 1 cut(s) | 148 |
| BseDI | CCNNGG | 2 cut(s) | 147, 473 |
| BseGI | GGATG | 2 cut(s) | 11, 262 |
| BseJI | GATNNNNATC | 1 cut(s) | 261 |
| BseRI | GAGGAG | 1 cut(s) | 28 |
| BseXI | GCAGC | 2 cut(s) | 181, 397 |
| BseYI | CCCAGC | 1 cut(s) | 59 |
| BsgI | GTGCAG | 1 cut(s) | 404 |
| BslFI | GGGAC | 1 cut(s) | 133 |
| BsmFI | GGGAC | 1 cut(s) | 133 |
| BspMAI | CTGCAG | 1 cut(s) | 171 |
| BssECI | CCNNGG | 2 cut(s) | 147, 473 |
| Bst2UI | CCWGG | 1 cut(s) | 148 |
| Bst4CI | ACNGT | 1 cut(s) | 277 |
| BstC8I | GCNNGC | 2 cut(s) | 174, 390 |
| BstF5I | GGATG | 2 cut(s) | 11, 262 |
| BstNI | CCWGG | 1 cut(s) | 148 |
| BstNSI | RCATGY | 1 cut(s) | 392 |
| BstSCI | CCNGG | 1 cut(s) | 146 |
| BstSFI | CTRYAG | 1 cut(s) | 167 |
| BstV1I | GCAGC | 2 cut(s) | 181, 397 |
| BtsCI | GGATG | 2 cut(s) | 11, 262 |
| Cac8I | GCNNGC | 2 cut(s) | 174, 390 |
| CviAII | CATG | 3 cut(s) | 106, 161, 389 |
| CviJI | RGCY | 5 cut(s) | 140, 146, 172, 440, 501 |
| CviKI_1 | RGCY | 5 cut(s) | 140, 146, 172, 440, 501 |
| Eco32I | GATATC | 1 cut(s) | 364 |
| Eco57I | CTGAAG | 2 cut(s) | 119, 162 |
| EcoRI | GAATTC | 1 cut(s) | 76 |
| EcoRII | CCWGG | 1 cut(s) | 146 |
| EcoRV | GATATC | 1 cut(s) | 364 |
| FaeI | CATG | 3 cut(s) | 109, 164, 392 |
| FaiI | YATR | 7 cut(s) | 71, 107, 162, 189, 335, 339, 390 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 429, 461 |
| FaqI | GGGAC | 1 cut(s) | 133 |
| FatI | CATG | 3 cut(s) | 105, 160, 388 |
| Fnu4HI | GCNGC | 2 cut(s) | 170, 386 |
| FokI | GGATG | 2 cut(s) | 18, 249 |
| Fsp4HI | GCNGC | 2 cut(s) | 170, 386 |
| FspBI | CTAG | 3 cut(s) | 423, 468, 502 |
| GluI | GCNGC | 2 cut(s) | 170, 386 |
| GsaI | CCCAGC | 1 cut(s) | 63 |
| Hin1II | CATG | 3 cut(s) | 109, 164, 392 |
| HinfI | GANTC | 3 cut(s) | 209, 215, 304 |
| HphI | GGTGA | 4 cut(s) | 98, 121, 137, 241 |
| Hpy166II | GTNNAC | 1 cut(s) | 112 |
| Hpy188I | TCNGA | 2 cut(s) | 214, 321 |
| Hpy188III | TCNNGA | 1 cut(s) | 468 |
| Hpy8I | GTNNAC | 1 cut(s) | 112 |
| HpyCH4III | ACNGT | 1 cut(s) | 277 |
| HpyCH4IV | ACGT | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 5 cut(s) | 169, 221, 291, 385, 405 |
| HpySE526I | ACGT | 1 cut(s) | 252 |
| Hsp92II | CATG | 3 cut(s) | 109, 164, 392 |
| LmnI | GCTCC | 1 cut(s) | 41 |
| LpnPI | CCDG | 6 cut(s) | 45, 108, 122, 133, 160, 381 |
| Lsp1109I | GCAGC | 2 cut(s) | 181, 397 |
| MaeI | CTAG | 3 cut(s) | 423, 468, 502 |
| MaeII | ACGT | 1 cut(s) | 252 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MboII | GAAGA | 1 cut(s) | 272 |
| MluCI | AATT | 3 cut(s) | 76, 223, 308 |
| MlyI | GAGTC | 1 cut(s) | 313 |
| MnlI | CCTC | 7 cut(s) | 49, 121, 276, 335, 337, 429, 483 |
| MseI | TTAA | 1 cut(s) | 285 |
| MspR9I | CCNGG | 1 cut(s) | 148 |
| MvaI | CCWGG | 1 cut(s) | 148 |
| NlaIII | CATG | 3 cut(s) | 109, 164, 392 |
| NmeAIII | GCCGAG | 1 cut(s) | 454 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| NspI | RCATGY | 1 cut(s) | 392 |
| PaeI | GCATGC | 1 cut(s) | 392 |
| PfeI | GAWTC | 2 cut(s) | 209, 215 |
| PkrI | GCNGC | 2 cut(s) | 171, 387 |
| PleI | GAGTC | 1 cut(s) | 312 |
| PpsI | GAGTC | 1 cut(s) | 312 |
| PsiI | TTATAA | 1 cut(s) | 71 |
| Psp6I | CCWGG | 1 cut(s) | 146 |
| PspFI | CCCAGC | 1 cut(s) | 59 |
| PspGI | CCWGG | 1 cut(s) | 146 |
| PstI | CTGCAG | 1 cut(s) | 171 |
| SaqAI | TTAA | 1 cut(s) | 285 |
| SatI | GCNGC | 2 cut(s) | 170, 386 |
| SchI | GAGTC | 1 cut(s) | 313 |
| ScrFI | CCNGG | 1 cut(s) | 148 |
| SetI | ASST | 7 cut(s) | 127, 132, 174, 255, 327, 463, 475 |
| SfcI | CTRYAG | 1 cut(s) | 167 |
| SmlI | CTYRAG | 1 cut(s) | 326 |
| SmoI | CTYRAG | 1 cut(s) | 326 |
| SphI | GCATGC | 1 cut(s) | 392 |
| Sse9I | AATT | 3 cut(s) | 76, 223, 308 |
| SspMI | CTAG | 3 cut(s) | 423, 468, 502 |
| StyD4I | CCNGG | 1 cut(s) | 146 |
| TaaI | ACNGT | 1 cut(s) | 277 |
| TaiI | ACGT | 1 cut(s) | 255 |
| TasI | AATT | 3 cut(s) | 76, 223, 308 |
| TfiI | GAWTC | 2 cut(s) | 209, 215 |
| Tru1I | TTAA | 1 cut(s) | 285 |
| Tru9I | TTAA | 1 cut(s) | 285 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| TseI | GCWGC | 2 cut(s) | 169, 385 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 2 cut(s) | 94, 149 |
| XapI | RAATTY | 2 cut(s) | 76, 223 |
| XbaI | TCTAGA | 1 cut(s) | 467 |
| XceI | RCATGY | 1 cut(s) | 392 |
| XspI | CTAG | 3 cut(s) | 423, 468, 502 |