Rorug01G0197000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000254
Physical Location & Seq
Forward (+)
27596805 .. 27603712
6908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0197000.1

Sequence Viewer

Length: 1878 bp
ATGACGCTCCACTCCATAGTAATCCAGAAGCTTCTGAGCACCAACGCCCATTTGGGCCGCCGCGTCGCGGCCCACCACTTCAAGCAGTTCACCTTCGGCCACCGCAACGGCATGGCCGTCATCGACTCCGACCGGACCCTCATCTGCCTCCGCAACGCCGCCCAGTTCATCGCCGCCATGGCCGAGAACAAGGCCCGCTTCATGTTCGTCAACACCAACTCCCTCTGGGACGAAATCGTCGAACAAATGACCAAGAAGATCGGCTGCTACTCTCCCTCCATGAACACTCTCTGGCGCACCGGCGGCTTCCTCACCAACAGCCACAGCCCGAAGAAGTTCAGGTCTCGCCGGAAGAAGATCGTCTTCGGACCGACTCAGCCGCCGGACTGCCTCGTGGTTTTCGACTCCGAGAGGAAGTCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGATTCCGATTGTTTCGCTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCGGTGCAGTTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCTTTCTTCAGCAGAAGAAGAGCGGCGCCGTTTCGGCCGAAATTGAGACTAGTGAGCAAGTGGGGGTTATAGAGGAGGCTAAGAGCGCAAAGAAGGATGAGTTGCTTGTGGTTCCTTACGAATTCTTACACATTTCTACTGATGTTGAGAAAATTGAGGAGATGCTGGACAAGCTTGTTGTGATCAAGTTCAATGGAGGCTTGGGTACAAGTATGGGATTCGGTGGCCCCAAGTCAACAATGGAAATTTTTGATGGGTTGACATCTCTTGACTTAATTGTTAATCAGATTGAGTCTCTCAATTCTAAGTATCACTGCAGTGTTCCTTTGGTCCTTGTGAACACAGATAGTACACATGAAGATACGCTGAAGGTCTTGGAGAAATATTCCAATTCAGACATTGATATTCAGTCTATTAAACAGACCCAACATCCACAGCTCAAGTCACAGGGAGGACAGAGTGGTGAGGATGAACTGTATCCCTCTGGCCACGGAGCAGTATTGCTTTCGCTTGTGAAAAATGGAACCCTTGATGTCCTATTATCAAAGGGGAAGGAGTATGTCCTTGTGGTTGACTCAGATAATGTGGCTGCTAAAATTGACCCAAAAATTTTAGACCATCTGGTTGAAAACAAGATAGACTACTGTATGGAGGTCACACCTACCTCCTCATATGATTCAGATTTGATTGGTTCACGCCTACAGAAGTTTGAGCTTGCAGAAATAGCTCAGAATTCCGTCAAAGATACGGGGAAATTCAAACTTGTCGATACTGGCAGCTTGTGGTTGAATGTTAGAGCCATTAAAAGGCTTTTGGATACAGATGAACTAAAGATTGAAGATTTCTCTGTTTCGAAGGAAACCGAGTCTGATCAAGTTCTTCTGCAAGAAACAGCAGTTGGTTCAGCAATACGGTTCTTCAATAATGCTGTTGGTGTCAACGTTCCTAATTCTCAATTTCTTTCAATGAAAAAAACATCAGATCTACTTCTGCTAAAGTCAAATCTCTATATGTATGATGAAGGGGTTGTAGTTCGGAATATAGCTAGAACCAACCCGGCAAATCCTGTGATCGAATTAGGGCCGGAATTTGAAAAGGTGAGTGGCCTTCTAAGTCGCTTTAAGTCCATGCCCGACATTATTGACCTGGACAGCTTGAAGGTCACTGGTGATGTTTGGTTTGGAGCTGGTATTACTCTCAAGGGGAGAGTAACAGTTAATGCAGAACCTGGGATGAAATTGGAAATTCCCGATGGAGTAGTAATAGAGAATGAGGATATTAAGGATCCTTCAGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

625

Amino Acids

69.56

Weight (kDa)

5.59

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S2 PF00318 11 - 112 8.6e-15 Ribosomal protein S2
Ribosomal_S2 PF00318 126 - 192 7.2e-10 Ribosomal protein S2
UDPGP PF01704 216 - 593 7.8e-107 UTP--glucose-1-phosphate uridylyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 602
AccBSI CCGCTC 1 cut(s) 600
AccII CGCG 2 cut(s) 63, 68
AclI AACGTT 1 cut(s) 1518
AclWI GGATC 2 cut(s) 1856, 1869
AcoI YGGCCR 5 cut(s) 97, 114, 180, 612, 1063
AcsI RAATTY 7 cut(s) 698, 822, 1185, 1309, 1331, 1664, 1821
AcuI CTGAAG 3 cut(s) 569, 965, 1851
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 4 cut(s) 494, 548, 784, 928
AfiI CCNNNNNNNGG 2 cut(s) 67, 1383
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 2 cut(s) 1722, 1804
AjuI GAANNNNNNNTTGG 2 cut(s) 1458, 1490
AleI CACNNNNGTG 1 cut(s) 894
AluBI AGCT 9 cut(s) 31, 751, 1015, 1291, 1304, 1356, 1622, 1731, 1763
AluI AGCT 9 cut(s) 31, 751, 1015, 1291, 1304, 1356, 1622, 1731, 1763
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 3 cut(s) 348, 617, 876
AlwI GGATC 2 cut(s) 1856, 1869
AlwNI CAGNNNCTG 1 cut(s) 1805
Ama87I CYCGRG 1 cut(s) 431
ApeKI GCWGC 3 cut(s) 264, 1166, 1353
ApoI RAATTY 7 cut(s) 698, 822, 1185, 1309, 1331, 1664, 1821
Asp700I GAANNNNTTC 1 cut(s) 335
AspLEI GCGC 4 cut(s) 297, 439, 605, 665
AspS9I GGNCC 8 cut(s) 55, 70, 135, 193, 368, 803, 907, 1658
AsuC2I CCSGG 1 cut(s) 1634
AsuHPI GGTGA 7 cut(s) 82, 304, 436, 559, 1052, 1687, 1757
AsuII TTCGAA 1 cut(s) 1430
AvaI CYCGRG 1 cut(s) 431
AvaII GGWCC 3 cut(s) 135, 368, 907
BalI TGGCCA 1 cut(s) 1065
BamHI GGATCC 1 cut(s) 1861
BanI GGYRCC 1 cut(s) 602
BauI CACGAG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 251, 1153, 1365
BccI CCATC 3 cut(s) 824, 1203, 1823
BceAI ACGGC 3 cut(s) 101, 124, 590
BciT130I CCWGG 2 cut(s) 1724, 1806
BciVI GTATCC 3 cut(s) 522, 1065, 1387
BclI TGATCA 3 cut(s) 564, 759, 1447
BcnI CCSGG 1 cut(s) 1634
BcoDI GTCTC 3 cut(s) 348, 617, 876
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 2 cut(s) 627, 1623
BfmI CTRYAG 2 cut(s) 892, 1277
BfoI RGCGCY 1 cut(s) 606
BfuI GTATCC 3 cut(s) 522, 1065, 1387
BglI GCCNNNNNGGC 2 cut(s) 179, 611
BglII AGATCT 1 cut(s) 1558
BmcAI AGTACT 1 cut(s) 494
Bme1390I CCNGG 3 cut(s) 1634, 1724, 1806
Bme18I GGWCC 3 cut(s) 135, 368, 907
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 8 cut(s) 55, 70, 135, 193, 368, 803, 907, 1658
BmiI GGNNCC 6 cut(s) 137, 604, 690, 805, 1102, 1863
BmrFI CCNGG 3 cut(s) 1634, 1724, 1806
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 729
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 355
Bpu14I TTCGAA 1 cut(s) 1430
BpuEI CTTGAG 2 cut(s) 1001, 1760
BpuMI CCSGG 1 cut(s) 1634
BsaAI YACGTR 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 4 cut(s) 177, 531, 1066, 1805
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 4 cut(s) 203, 233, 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 1383
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 163, 1354, 1747
BseBI CCWGG 2 cut(s) 1724, 1806
BseDI CCNNGG 4 cut(s) 177, 531, 1066, 1805
BseGI GGATG 4 cut(s) 679, 1006, 1051, 1815
BseLI CCNNNNNNNGG 2 cut(s) 67, 1383
BseMII CTCAG 4 cut(s) 26, 389, 1167, 1319
BseNI ACTGG 3 cut(s) 163, 1354, 1747
BseRI GAGGAG 3 cut(s) 665, 749, 1234
BseX3I CGGCCG 1 cut(s) 612
BseXI GCAGC 3 cut(s) 251, 1153, 1365
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 2 cut(s) 63, 68
Bsh1285I CGRYCG 2 cut(s) 133, 615
BshNI GGYRCC 1 cut(s) 602
BsiEI CGRYCG 2 cut(s) 133, 615
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 6 cut(s) 133, 300, 349, 383, 1634, 1661
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 67, 1383
BsmAI GTCTC 3 cut(s) 348, 617, 876
BsmFI GGGAC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 1430
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 9 cut(s) 258, 357, 504, 564, 759, 1447, 1558, 1647, 1861
Bsp19I CCATGG 1 cut(s) 177
BspCNI CTCAG 4 cut(s) 27, 388, 1166, 1318
BspFNI CGCG 2 cut(s) 63, 68
BspLI GGNNCC 6 cut(s) 137, 604, 690, 805, 1102, 1863
BspMAI CTGCAG 1 cut(s) 896
BspPI GGATC 2 cut(s) 1856, 1869
BspQI GCTCTTC 1 cut(s) 590
BspT104I TTCGAA 1 cut(s) 1430
BspT107I GGYRCC 1 cut(s) 602
BspTNI GGTCTC 1 cut(s) 348
BsrBI CCGCTC 1 cut(s) 600
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 3 cut(s) 163, 1354, 1747
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 4 cut(s) 177, 531, 1066, 1805
BssMI GATC 9 cut(s) 258, 357, 504, 564, 759, 1447, 1558, 1647, 1861
BssNI GRCGYC 1 cut(s) 603
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 1724, 1806
Bst4CI ACNGT 4 cut(s) 1053, 1223, 1491, 1792
Bst6I CTCTTC 1 cut(s) 590
BstACI GRCGYC 1 cut(s) 603
BstAPI GCANNNNNTGC 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 1430
BstC8I GCNNGC 2 cut(s) 196, 1293
BstDEI CTNAG 7 cut(s) 35, 375, 657, 882, 1153, 1305, 1688
BstDSI CCRYGG 2 cut(s) 177, 1066
BstF5I GGATG 4 cut(s) 679, 1006, 1051, 1815
BstFNI CGCG 2 cut(s) 63, 68
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 4 cut(s) 297, 439, 605, 665
BstKTI GATC 9 cut(s) 261, 360, 507, 567, 762, 1450, 1561, 1650, 1864
BstMAI GTCTC 3 cut(s) 348, 617, 876
BstMBI GATC 9 cut(s) 258, 357, 504, 564, 759, 1447, 1558, 1647, 1861
BstMCI CGRYCG 2 cut(s) 133, 615
BstMWI GCNNNNNNNGC 7 cut(s) 179, 303, 445, 611, 662, 748, 1301
BstNI CCWGG 2 cut(s) 1724, 1806
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 3 cut(s) 1632, 1722, 1804
BstSFI CTRYAG 2 cut(s) 892, 1277
BstUI CGCG 2 cut(s) 63, 68
BstV1I GCAGC 3 cut(s) 251, 1153, 1365
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 2 cut(s) 1558, 1861
BstYI RGATCY 2 cut(s) 1558, 1861
BstZI CGGCCG 1 cut(s) 612
BsuI GTATCC 3 cut(s) 522, 1065, 1387
BtgI CCRYGG 2 cut(s) 177, 1066
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 4 cut(s) 679, 1006, 1051, 1815
BtsI GCAGTG 2 cut(s) 889, 901
BtsIMutI CAGTG 3 cut(s) 889, 901, 1740
Cac8I GCNNGC 2 cut(s) 196, 1293
CaiI CAGNNNCTG 1 cut(s) 1805
CfoI GCGC 4 cut(s) 297, 439, 605, 665
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 8 cut(s) 55, 70, 135, 193, 368, 803, 907, 1658
CpoI CGGWCCG 1 cut(s) 368
CseI GACGC 2 cut(s) 13, 52
Csp6I GTAC 4 cut(s) 493, 547, 783, 927
CspI CGGWCCG 1 cut(s) 368
CviAII CATG 7 cut(s) 112, 178, 202, 280, 481, 932, 1705
CviQI GTAC 4 cut(s) 493, 547, 783, 927
DdeI CTNAG 7 cut(s) 35, 375, 657, 882, 1153, 1305, 1688
DinI GGCGCC 1 cut(s) 604
DpnI GATC 9 cut(s) 260, 359, 506, 566, 761, 1449, 1560, 1649, 1863
DpnII GATC 9 cut(s) 258, 357, 504, 564, 759, 1447, 1558, 1647, 1861
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 5 cut(s) 97, 114, 180, 612, 1063
EagI CGGCCG 1 cut(s) 612
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
EclXI CGGCCG 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 348
Eco47I GGWCC 3 cut(s) 135, 368, 907
Eco52I CGGCCG 1 cut(s) 612
Eco57I CTGAAG 3 cut(s) 569, 965, 1851
Eco88I CYCGRG 1 cut(s) 431
EcoRI GAATTC 2 cut(s) 698, 1309
EcoRII CCWGG 2 cut(s) 1722, 1804
EcoT14I CCWWGG 1 cut(s) 177
EgeI GGCGCC 1 cut(s) 604
EheI GGCGCC 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 7 cut(s) 115, 181, 205, 283, 484, 935, 1708
FalI AAGNNNNNCTT 6 cut(s) 182, 214, 347, 379, 563, 595
FaqI GGGAC 1 cut(s) 242
FatI CATG 7 cut(s) 111, 177, 201, 279, 480, 931, 1704
FauI CCCGC 1 cut(s) 203
FauNDI CATATG 1 cut(s) 1249
FbaI TGATCA 3 cut(s) 564, 759, 1447
FokI GGATG 4 cut(s) 686, 993, 1058, 1822
FspBI CTAG 2 cut(s) 627, 1623
GlaI GCGC 4 cut(s) 296, 438, 604, 664
HaeII RGCGCY 1 cut(s) 606
HapII CCGG 6 cut(s) 133, 300, 349, 383, 1634, 1661
HgaI GACGC 2 cut(s) 13, 52
HhaI GCGC 4 cut(s) 297, 439, 605, 665
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 7 cut(s) 115, 181, 205, 283, 484, 935, 1708
Hin6I GCGC 4 cut(s) 295, 437, 603, 663
HinP1I GCGC 4 cut(s) 295, 437, 603, 663
HincII GTYRAC 5 cut(s) 211, 813, 837, 1150, 1516
HindII GTYRAC 5 cut(s) 211, 813, 837, 1150, 1516
HindIII AAGCTT 2 cut(s) 29, 749
HpaII CCGG 6 cut(s) 133, 300, 349, 383, 1634, 1661
HphI GGTGA 7 cut(s) 82, 304, 436, 559, 1052, 1687, 1757
Hpy188III TCNNGA 4 cut(s) 25, 431, 845, 1826
Hpy99I CGWCG 3 cut(s) 68, 242, 424
HpyAV CCTTC 9 cut(s) 103, 664, 940, 1123, 1426, 1592, 1694, 1729, 1875
HpyCH4III ACNGT 4 cut(s) 1053, 1223, 1491, 1792
HpyCH4IV ACGT 3 cut(s) 509, 575, 1518
HpyCH4V TGCA 7 cut(s) 448, 538, 558, 894, 1295, 1462, 1799
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 303, 445, 611, 662, 748, 1301
HpyF3I CTNAG 7 cut(s) 35, 375, 657, 882, 1153, 1305, 1688
HpySE526I ACGT 3 cut(s) 509, 575, 1518
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 7 cut(s) 115, 181, 205, 283, 484, 935, 1708
HspAI GCGC 4 cut(s) 295, 437, 603, 663
KasI GGCGCC 1 cut(s) 602
Ksp22I TGATCA 3 cut(s) 564, 759, 1447
Kzo9I GATC 9 cut(s) 258, 357, 504, 564, 759, 1447, 1558, 1647, 1861
LguI GCTCTTC 1 cut(s) 590
LmnI GCTCC 3 cut(s) 12, 1070, 1760
Lsp1109I GCAGC 3 cut(s) 251, 1153, 1365
LweI GCATC 1 cut(s) 729
MaeI CTAG 2 cut(s) 627, 1623
MaeII ACGT 3 cut(s) 509, 575, 1518
MaeIII GTNAC 4 cut(s) 1020, 1231, 1738, 1786
MalI GATC 9 cut(s) 260, 359, 506, 566, 761, 1449, 1560, 1649, 1863
MbiI CCGCTC 1 cut(s) 600
MboI GATC 9 cut(s) 258, 357, 504, 564, 759, 1447, 1558, 1647, 1861
MflI RGATCY 2 cut(s) 1558, 1861
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 1 cut(s) 1065
MluNI TGGCCA 1 cut(s) 1065
Mly113I GGCGCC 1 cut(s) 603
MlyI GAGTC 7 cut(s) 119, 367, 398, 467, 878, 1145, 1451
MmeI TCCRAC 1 cut(s) 153
Mox20I TGGCCA 1 cut(s) 1065
MroXI GAANNNNTTC 1 cut(s) 335
MscI TGGCCA 1 cut(s) 1065
MseI TTAA 7 cut(s) 851, 858, 993, 1380, 1698, 1794, 1857
MslI CAYNNNNRTG 1 cut(s) 894
Msp20I TGGCCA 1 cut(s) 1065
MspI CCGG 6 cut(s) 133, 300, 349, 383, 1634, 1661
MspR9I CCNGG 3 cut(s) 1634, 1724, 1806
MvaI CCWGG 2 cut(s) 1724, 1806
MvnI CGCG 2 cut(s) 63, 68
MwoI GCNNNNNNNGC 7 cut(s) 179, 303, 445, 611, 662, 748, 1301
NarI GGCGCC 1 cut(s) 603
NciI CCSGG 1 cut(s) 1634
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 1249
NdeII GATC 9 cut(s) 258, 357, 504, 564, 759, 1447, 1558, 1647, 1861
NlaIII CATG 7 cut(s) 115, 181, 205, 283, 484, 935, 1708
NlaIV GGNNCC 6 cut(s) 137, 604, 690, 805, 1102, 1863
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 3 cut(s) 1020, 1231, 1738
NspI RCATGY 1 cut(s) 484
NspV TTCGAA 1 cut(s) 1430
OliI CACNNNNGTG 1 cut(s) 894
PaeR7I CTCGAG 1 cut(s) 431
PciSI GCTCTTC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 237, 399
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 5 cut(s) 427, 451, 517, 795, 1253
PleI GAGTC 7 cut(s) 119, 367, 398, 467, 877, 1145, 1450
PluTI GGCGCC 1 cut(s) 606
PpsI GAGTC 7 cut(s) 119, 367, 398, 467, 877, 1145, 1450
Ppu21I YACGTR 1 cut(s) 510
Psp1406I AACGTT 1 cut(s) 1518
Psp6I CCWGG 2 cut(s) 1722, 1804
PspGI CCWGG 2 cut(s) 1722, 1804
PspN4I GGNNCC 6 cut(s) 137, 604, 690, 805, 1102, 1863
PspPI GGNCC 8 cut(s) 55, 70, 135, 193, 368, 803, 907, 1658
PstI CTGCAG 1 cut(s) 896
PstNI CAGNNNCTG 1 cut(s) 1805
PsuI RGATCY 2 cut(s) 1558, 1861
RsaI GTAC 4 cut(s) 494, 548, 784, 928
RsaNI GTAC 4 cut(s) 493, 547, 783, 927
RseI CAYNNNNRTG 1 cut(s) 894
Rsr2I CGGWCCG 1 cut(s) 368
RsrII CGGWCCG 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 7 cut(s) 851, 858, 993, 1380, 1698, 1794, 1857
Sau3AI GATC 9 cut(s) 258, 357, 504, 564, 759, 1447, 1558, 1647, 1861
Sau96I GGNCC 8 cut(s) 55, 70, 135, 193, 368, 803, 907, 1658
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 7 cut(s) 119, 367, 398, 467, 878, 1145, 1451
ScrFI CCNGG 3 cut(s) 1634, 1724, 1806
SduI GDGCHC 1 cut(s) 41
SfaNI GCATC 1 cut(s) 729
SfcI CTRYAG 2 cut(s) 892, 1277
SfoI GGCGCC 1 cut(s) 604
Sfr274I CTCGAG 1 cut(s) 431
SfuI TTCGAA 1 cut(s) 1430
SgrAI CRCCGGYG 1 cut(s) 299
SinI GGWCC 3 cut(s) 135, 368, 907
SlaI CTCGAG 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 894
SmlI CTYRAG 3 cut(s) 431, 1016, 1775
SmoI CTYRAG 3 cut(s) 431, 1016, 1775
SpeI ACTAGT 1 cut(s) 626
SspDI GGCGCC 1 cut(s) 602
SspI AATATT 1 cut(s) 962
SspMI CTAG 2 cut(s) 627, 1623
StyD4I CCNGG 3 cut(s) 1632, 1722, 1804
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 4 cut(s) 1053, 1223, 1491, 1792
TaiI ACGT 3 cut(s) 512, 578, 1521
TaqI TCGA 8 cut(s) 123, 240, 402, 432, 489, 1344, 1430, 1650
TaqII GACCGA 1 cut(s) 385
TatI WGTACW 2 cut(s) 492, 926
TauI GCSGC 8 cut(s) 60, 63, 71, 161, 176, 306, 382, 603
TfiI GAWTC 5 cut(s) 427, 451, 517, 795, 1253
Tru1I TTAA 7 cut(s) 851, 858, 993, 1380, 1698, 1794, 1857
Tru9I TTAA 7 cut(s) 851, 858, 993, 1380, 1698, 1794, 1857
TscAI CASTG 3 cut(s) 896, 901, 1747
TseFI GTSAC 3 cut(s) 1020, 1231, 1738
TseI GCWGC 3 cut(s) 264, 1166, 1353
Tsp45I GTSAC 3 cut(s) 1020, 1231, 1738
TspDTI ATGAA 9 cut(s) 157, 190, 296, 948, 1062, 1416, 1559, 1611, 1826
TspGWI ACGGA 3 cut(s) 510, 1083, 1303
TspRI CASTG 3 cut(s) 896, 901, 1747
VpaK11BI GGWCC 3 cut(s) 135, 368, 907
XapI RAATTY 7 cut(s) 698, 822, 1185, 1309, 1331, 1664, 1821
XceI RCATGY 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 2 cut(s) 49, 814
XhoI CTCGAG 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 2 cut(s) 627, 1623
ZrmI AGTACT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.