FvH4_3g30492

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000254
Physical Location & Seq
Forward (+)
23800676 .. 23801721
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30492.t1

Sequence Viewer

Length: 939 bp
ATGGTCTGTAATTTTTGGAATGCTGAGGGCTGGGATGTGGAACTTCTTCTTTCTGTTCTTCCTCGTAATAATGTGAATTTCATCATTAATGTTCCAACTGGTTTTAATGAGTGCGGTGATGATATTAGAATTTGGAACTCTACTTCTAATGGTCAGTTTTCTGTAAAGTGTGCATATAATTCCCTTTTTGACTTGTCTGAACCTGTGAATCCTCAATGGAGTGCCTTATGGAACTTTGATCTGCCCCCAAAACTTAAGACCTTTTTGTGGACTTTACTTCACAAGAAATTGCTTACCAATGTTCAACGAGTTACTAGAGGTTTTGCTTCTAATCCTGCTTGCCCCATTTGTCATTCTAATGGATGGATTAATGCTTCTCTCCACTGTCATACTGCTATTCAAGATAATATCAGATGGAAGTGCTTGTTTATTTTCATCTGTTGGTTTATTTGGAAGTGGAGAAATAAACAGGTTTTTGAGCCTGGCTTTGTTCTTCCTGCTTGCTTCAAGAATATGATATGGGATTATGCTATTGAATGGAAGAAAACTAAGTTGAAATCCAATGAAAATTCCATGTTCAGCTATACTATGCTTTCATGGAAAAGGCCTCCTGAGAATTTTTTCAAGTTAAATGTTGATGGAACTAGGACTTCTCCTTCTGGTAAAATAGGTGCTGGTGGTGTTATTAGAAATCATTGTGGAGACTGGATTATTGGATTTCATATTAATCTTGAAGTTGGTGAAATCTTGGATGCTGAAGCATGGGGTCTTTTTCATGGTCTGAAGCTGGCTGTTGATTTGAATATCAAAAACTTAGTGATTGAATCTAATTCTGCTGTCTTGGTCCAACTGATGCAAAATTCCAACTTTGATATTCATCCTTTGGGTTCCCTTCTTTGTGGTTGCAAAAACATGATGAACAAGATGGATGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

313

Amino Acids

35.75

Weight (kDa)

8.22

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 53 - 120 3.1e-12 zinc-binding in reverse transcriptase
RVT_3 PF13456 211 - 309 2.3e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AcsI RAATTY 5 cut(s) 76, 129, 568, 616, 859
AcuI CTGAAG 2 cut(s) 777, 803
AfiI CCNNNNNNNGG 1 cut(s) 267
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 9 cut(s) 305, 401, 508, 536, 556, 625, 734, 802, 824
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 2 cut(s) 582, 787
AluI AGCT 2 cut(s) 582, 787
Alw26I GTCTC 1 cut(s) 696
AoxI GGCC 1 cut(s) 605
ApoI RAATTY 5 cut(s) 76, 129, 568, 616, 859
AseI ATTAAT 3 cut(s) 87, 369, 726
Asp700I GAANNNNTTC 2 cut(s) 45, 620
AspS9I GGNCC 1 cut(s) 844
AsuHPI GGTGA 2 cut(s) 128, 752
AvaII GGWCC 1 cut(s) 844
BbvCI CCTCAGC 1 cut(s) 24
BccI CCATC 4 cut(s) 357, 408, 632, 919
BciT130I CCWGG 1 cut(s) 483
BcoDI GTCTC 1 cut(s) 696
BfaI CTAG 2 cut(s) 315, 645
BfrI CTTAAG 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 844
BmiI GGNNCC 1 cut(s) 889
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 3 cut(s) 742, 843, 922
Bpu10I CCTNAGC 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 876
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 103, 710
Bse8I GATNNNNATC 1 cut(s) 876
BseBI CCWGG 1 cut(s) 483
BseGI GGATG 5 cut(s) 40, 368, 757, 877, 934
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 15, 603
BseNI ACTGG 2 cut(s) 103, 710
BseYI CCCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 607
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 696
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 1 cut(s) 607
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 2 cut(s) 16, 604
BspLI GGNNCC 1 cut(s) 889
BspTI CTTAAG 1 cut(s) 254
BsrI ACTGG 2 cut(s) 103, 710
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 386
BstAFI CTTAAG 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 340, 502, 789
BstDEI CTNAG 5 cut(s) 24, 549, 612, 814, 936
BstF5I GGATG 5 cut(s) 40, 368, 757, 877, 934
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 696
BstMBI GATC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 481
BsuRI GGCC 1 cut(s) 607
BtsCI GGATG 5 cut(s) 40, 368, 757, 877, 934
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 3 cut(s) 340, 502, 789
Cfr13I GGNCC 1 cut(s) 844
CviAII CATG 5 cut(s) 574, 597, 762, 776, 913
CviJI RGCY 7 cut(s) 30, 481, 486, 582, 607, 787, 791
CviKI_1 RGCY 7 cut(s) 30, 481, 486, 582, 607, 787, 791
DdeI CTNAG 5 cut(s) 24, 549, 612, 814, 936
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 844
Eco57I CTGAAG 2 cut(s) 777, 803
EcoRII CCWGG 1 cut(s) 481
FaeI CATG 5 cut(s) 577, 600, 765, 779, 916
FatI CATG 5 cut(s) 573, 596, 761, 775, 912
FokI GGATG 4 cut(s) 47, 375, 764, 864
FspBI CTAG 2 cut(s) 315, 645
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 607
Hin1II CATG 5 cut(s) 577, 600, 765, 779, 916
HinfI GANTC 2 cut(s) 208, 824
HphI GGTGA 2 cut(s) 128, 752
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 3 cut(s) 199, 413, 783
Hpy188III TCNNGA 4 cut(s) 401, 508, 611, 731
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 2 cut(s) 666, 902
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 3 cut(s) 173, 856, 906
HpyF3I CTNAG 5 cut(s) 24, 549, 612, 814, 936
Hsp92II CATG 5 cut(s) 577, 600, 765, 779, 916
Kzo9I GATC 1 cut(s) 238
LweI GCATC 3 cut(s) 742, 843, 922
MaeI CTAG 2 cut(s) 315, 645
MaeIII GTNAC 1 cut(s) 310
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 4 cut(s) 38, 50, 485, 553
MluCI AATT 9 cut(s) 10, 76, 129, 178, 287, 568, 616, 829, 859
MmeI TCCRAC 3 cut(s) 119, 871, 888
MnlI CCTC 5 cut(s) 19, 72, 222, 311, 618
MroXI GAANNNNTTC 2 cut(s) 45, 620
MseI TTAA 6 cut(s) 87, 105, 255, 369, 629, 726
MslI CAYNNNNRTG 1 cut(s) 357
MspCI CTTAAG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 1 cut(s) 483
NdeII GATC 1 cut(s) 238
NlaIII CATG 5 cut(s) 577, 600, 765, 779, 916
NlaIV GGNNCC 1 cut(s) 889
PceI AGGCCT 1 cut(s) 607
PctI GAATGC 1 cut(s) 25
PdmI GAANNNNTTC 2 cut(s) 45, 620
PfeI GAWTC 2 cut(s) 208, 824
PshBI ATTAAT 3 cut(s) 87, 369, 726
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 889
PspPI GGNCC 1 cut(s) 844
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 6 cut(s) 87, 105, 255, 369, 629, 726
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 844
ScrFI CCNGG 1 cut(s) 483
SetI ASST 7 cut(s) 205, 263, 322, 474, 584, 673, 789
SfaNI GCATC 3 cut(s) 742, 843, 922
SinI GGWCC 1 cut(s) 844
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 9 cut(s) 10, 76, 129, 178, 287, 568, 616, 829, 859
SseBI AGGCCT 1 cut(s) 607
SsiI CCGC 1 cut(s) 114
SspMI CTAG 2 cut(s) 315, 645
StuI AGGCCT 1 cut(s) 607
StyD4I CCNGG 1 cut(s) 481
TaaI ACNGT 1 cut(s) 386
TasI AATT 9 cut(s) 10, 76, 129, 178, 287, 568, 616, 829, 859
TfiI GAWTC 2 cut(s) 208, 824
Tru1I TTAA 6 cut(s) 87, 105, 255, 369, 629, 726
Tru9I TTAA 6 cut(s) 87, 105, 255, 369, 629, 726
TscAI CASTG 1 cut(s) 389
TspDTI ATGAA 8 cut(s) 70, 424, 579, 585, 710, 764, 866, 932
TspRI CASTG 1 cut(s) 389
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 844
VspI ATTAAT 3 cut(s) 87, 369, 726
XapI RAATTY 5 cut(s) 76, 129, 568, 616, 859
XmnI GAANNNNTTC 2 cut(s) 45, 620
XspI CTAG 2 cut(s) 315, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.