Rorug07G0245500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000254
Physical Location & Seq
Reverse (-)
22723843 .. 22725553
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0245500.1

Sequence Viewer

Length: 1005 bp
ATGGGTAGATCCCCTTGTTGTGATGATCAGAGTGGTTTGAAGAAAGGTCCATGGACAACCGAAGAAGATCAGAAGTTGGTTGATTACATTAACACAAATGGCCATGGAAGCTGGAGAGCTCTCCCCAAGCTTGCAGGCCTCAACAGGTGTGGCAAGAGTTGCAGGTTAAGGTGGACTAATTACCTGAGGCCTGATATCAAGAGAGGTAAATTCTCCGAAGAAGAGGAAAGAGTTATCATCAACCTTCATGCAGTTGTGGGGAACAAGTGGTCTAAGATTGCTACTCATCTTCCGGGGCGAACTGATAATGAAATCAAGAACTTTTGGAACACTCACCTGAGAAAGAAGCTGCTACAAATGGGACTTGATCCAAACACCCACAAGCCAAGGACAGACCTCAGTCACCTTCTGAATCTTTCGCAGTTGCTTAGCACGGCGAACGTTGGCAACATGATGACTAGTACTCCTTGGGACAATGCACTAAGGCTACAAGCAAGTGCTGCACAGCTAGCAAAAATGCAATTACTGCAAAATTTATACATGCAGGTTATAAATTCGTCAGTTGCACCTGATATAGACAACAAGACTAGTACTGGTCTTTTTGGTTCTCAGAATATTAACCTCTTTGGAGGGAACTTCAGCGGAGCAAGCACTATGGTAAGAGGTCAAGAATGGAATCCTGATAGCATCCCTGGAGCACCTAATGAGTTAAACACTATTTCCAACTCACTGGAAGGGTTTGAAGGACTGAATAGCAATATTAACACCAACTTGATGAGCAGCTGCTATGATATCCAGAGCTTTAAGAACCAATTTTCTGAATTAGTTTCAGCATCATCTCCTGGGAGTTCCACTACCAATAACCAAATCGAAAGCACGAGTACAGGTGATATTCCAGCTGCAGGTCAGTCATCACCCACCTCCATCTTTGAGGCTTGGGAGAAACTCATGGATGATGATACGAGTGAATCCTACTGGAAAGATATTCTGCAATCAATGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

334

Amino Acids

36.97

Weight (kDa)

6.1

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 1.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 77 3.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 113 5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 2.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
Acc36I ACCTGC 3 cut(s) 153, 535, 893
AciI CCGC 1 cut(s) 642
AclI AACGTT 1 cut(s) 441
AclWI GGATC 2 cut(s) 3, 362
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 3 cut(s) 209, 532, 553
AcuI CTGAAG 1 cut(s) 622
AfaI GTAC 3 cut(s) 463, 592, 883
AfiI CCNNNNNNNGG 1 cut(s) 902
AgsI TTSAA 2 cut(s) 40, 743
AhlI ACTAGT 2 cut(s) 458, 587
AjnI CCWGG 2 cut(s) 691, 841
AluBI AGCT 8 cut(s) 111, 119, 130, 349, 508, 783, 801, 899
AluI AGCT 8 cut(s) 111, 119, 130, 349, 508, 783, 801, 899
Alw21I GWGCWC 2 cut(s) 121, 700
AlwI GGATC 2 cut(s) 3, 362
AoxI GGCC 3 cut(s) 100, 136, 188
ApeKI GCWGC 5 cut(s) 349, 500, 780, 783, 899
ApoI RAATTY 3 cut(s) 209, 532, 553
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 4 cut(s) 326, 395, 899, 906
AsuNHI GCTAGC 1 cut(s) 508
AvaII GGWCC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 185
BalI TGGCCA 1 cut(s) 102
BanII GRGCYC 1 cut(s) 121
BauI CACGAG 1 cut(s) 877
Bbv12I GWGCWC 2 cut(s) 121, 700
BbvI GCAGC 5 cut(s) 336, 487, 770, 792, 886
BccI CCATC 1 cut(s) 932
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 2 cut(s) 693, 843
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 294
BcuI ACTAGT 2 cut(s) 458, 587
BfaI CTAG 3 cut(s) 459, 509, 588
BfmI CTRYAG 1 cut(s) 900
BfuAI ACCTGC 3 cut(s) 153, 535, 893
BisI GCNGC 5 cut(s) 350, 501, 781, 784, 900
BlpI GCTNAGC 1 cut(s) 428
BlsI GCNGC 5 cut(s) 351, 502, 782, 785, 901
BmcAI AGTACT 2 cut(s) 463, 592
Bme1390I CCNGG 3 cut(s) 294, 693, 843
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 3 cut(s) 294, 693, 843
BmsI GCATC 2 cut(s) 696, 842
BmtI GCTAGC 1 cut(s) 512
BoxI GACNNNNGTC 1 cut(s) 399
BpmI CTGGAG 2 cut(s) 133, 714
Bpu1102I GCTNAGC 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 294
BsaJI CCNNGG 7 cut(s) 50, 103, 293, 386, 467, 691, 842
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 902
Bse1I ACTGG 3 cut(s) 598, 735, 980
Bse21I CCTNAGG 1 cut(s) 185
BseBI CCWGG 2 cut(s) 693, 843
BseDI CCNNGG 7 cut(s) 50, 103, 293, 386, 467, 691, 842
BseGI GGATG 2 cut(s) 687, 958
BseLI CCNNNNNNNGG 1 cut(s) 902
BseMII CTCAG 4 cut(s) 176, 329, 412, 623
BseNI ACTGG 3 cut(s) 598, 735, 980
BseXI GCAGC 5 cut(s) 336, 487, 770, 792, 886
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 3 cut(s) 102, 138, 190
BsiHKAI GWGCWC 2 cut(s) 121, 700
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 2 cut(s) 375, 485
BslI CCNNNNNNNGG 1 cut(s) 902
BsmFI GGGAC 2 cut(s) 375, 485
BsnI GGCC 3 cut(s) 102, 138, 190
Bsp1286I GDGCHC 2 cut(s) 121, 700
Bsp143I GATC 4 cut(s) 8, 25, 67, 367
Bsp1720I GCTNAGC 1 cut(s) 428
Bsp19I CCATGG 2 cut(s) 50, 103
BspACI CCGC 1 cut(s) 642
BspANI GGCC 3 cut(s) 102, 138, 190
BspCNI CTCAG 4 cut(s) 177, 330, 411, 622
BspMAI CTGCAG 1 cut(s) 904
BspMI ACCTGC 3 cut(s) 153, 535, 893
BspOI GCTAGC 1 cut(s) 512
BspPI GGATC 2 cut(s) 3, 362
BsrI ACTGG 3 cut(s) 598, 735, 980
BssECI CCNNGG 7 cut(s) 50, 103, 293, 386, 467, 691, 842
BssMI GATC 4 cut(s) 8, 25, 67, 367
BssSI CACGAG 1 cut(s) 877
BssT1I CCWWGG 4 cut(s) 50, 103, 386, 467
Bst2BI CACGAG 1 cut(s) 877
Bst2UI CCWGG 2 cut(s) 693, 843
Bst6I CTCTTC 1 cut(s) 216
BstAPI GCANNNNNTGC 3 cut(s) 159, 500, 526
BstC8I GCNNGC 4 cut(s) 132, 136, 510, 649
BstDEI CTNAG 7 cut(s) 185, 273, 338, 398, 428, 482, 609
BstDSI CCRYGG 2 cut(s) 50, 103
BstF5I GGATG 2 cut(s) 687, 958
BstKTI GATC 4 cut(s) 11, 28, 70, 370
BstMBI GATC 4 cut(s) 8, 25, 67, 367
BstMWI GCNNNNNNNGC 6 cut(s) 108, 159, 500, 509, 526, 648
BstNI CCWGG 2 cut(s) 693, 843
BstNSI RCATGY 1 cut(s) 544
BstPAI GACNNNNGTC 1 cut(s) 399
BstSCI CCNGG 3 cut(s) 292, 691, 841
BstSFI CTRYAG 1 cut(s) 900
BstV1I GCAGC 5 cut(s) 336, 487, 770, 792, 886
BstX2I RGATCY 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 730
BstYI RGATCY 1 cut(s) 8
Bsu36I CCTNAGG 1 cut(s) 185
BsuRI GGCC 3 cut(s) 102, 138, 190
BtgI CCRYGG 2 cut(s) 50, 103
BtsCI GGATG 2 cut(s) 687, 958
BtsIMutI CAGTG 1 cut(s) 728
BveI ACCTGC 3 cut(s) 153, 535, 893
Cac8I GCNNGC 4 cut(s) 132, 136, 510, 649
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 462, 591, 882
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 6 cut(s) 51, 104, 248, 451, 541, 949
CviQI GTAC 3 cut(s) 462, 591, 882
DdeI CTNAG 7 cut(s) 185, 273, 338, 398, 428, 482, 609
DpnI GATC 4 cut(s) 10, 27, 69, 369
DpnII GATC 4 cut(s) 8, 25, 67, 367
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 119
Eco130I CCWWGG 4 cut(s) 50, 103, 386, 467
Eco147I AGGCCT 2 cut(s) 138, 190
Eco24I GRGCYC 1 cut(s) 121
Eco32I GATATC 2 cut(s) 196, 793
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 622
Eco81I CCTNAGG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 691, 841
EcoRV GATATC 2 cut(s) 196, 793
EcoT14I CCWWGG 4 cut(s) 50, 103, 386, 467
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 4 cut(s) 50, 103, 386, 467
FaeI CATG 6 cut(s) 54, 107, 251, 454, 544, 952
FaqI GGGAC 2 cut(s) 375, 485
FatI CATG 6 cut(s) 50, 103, 247, 450, 540, 948
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 350, 501, 781, 784, 900
FokI GGATG 2 cut(s) 674, 965
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 5 cut(s) 350, 501, 781, 784, 900
FspBI CTAG 3 cut(s) 459, 509, 588
GluI GCNGC 5 cut(s) 350, 501, 781, 784, 900
GsuI CTGGAG 2 cut(s) 133, 714
HaeIII GGCC 3 cut(s) 102, 138, 190
HapII CCGG 1 cut(s) 293
Hin1II CATG 6 cut(s) 54, 107, 251, 454, 544, 952
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 412, 676, 968
HpaII CCGG 1 cut(s) 293
HphI GGTGA 4 cut(s) 326, 395, 899, 906
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 6 cut(s) 30, 72, 217, 411, 612, 820
Hpy188III TCNNGA 5 cut(s) 199, 316, 668, 680, 796
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 4 cut(s) 254, 416, 728, 737
HpyCH4IV ACGT 1 cut(s) 441
HpyF10VI GCNNNNNNNGC 6 cut(s) 108, 159, 500, 509, 526, 648
HpyF3I CTNAG 7 cut(s) 185, 273, 338, 398, 428, 482, 609
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 6 cut(s) 54, 107, 251, 454, 544, 952
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 4 cut(s) 8, 25, 67, 367
LmnI GCTCC 2 cut(s) 644, 695
Lsp1109I GCAGC 5 cut(s) 336, 487, 770, 792, 886
LweI GCATC 2 cut(s) 696, 842
MaeI CTAG 3 cut(s) 459, 509, 588
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 401
MalI GATC 4 cut(s) 10, 27, 69, 369
MboI GATC 4 cut(s) 8, 25, 67, 367
MboII GAAGA 6 cut(s) 52, 74, 77, 230, 233, 281
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 121, 700
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 7 cut(s) 178, 209, 521, 532, 553, 812, 821
MluNI TGGCCA 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 747
Mox20I TGGCCA 1 cut(s) 102
MscI TGGCCA 1 cut(s) 102
MseI TTAA 6 cut(s) 90, 167, 618, 710, 762, 804
Msp20I TGGCCA 1 cut(s) 102
MspA1I CMGCKG 3 cut(s) 642, 783, 899
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 3 cut(s) 294, 693, 843
MvaI CCWGG 2 cut(s) 693, 843
MwoI GCNNNNNNNGC 6 cut(s) 108, 159, 500, 509, 526, 648
NciI CCSGG 1 cut(s) 294
NcoI CCATGG 2 cut(s) 50, 103
NdeII GATC 4 cut(s) 8, 25, 67, 367
NheI GCTAGC 1 cut(s) 508
NlaIII CATG 6 cut(s) 54, 107, 251, 454, 544, 952
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 1 cut(s) 544
PceI AGGCCT 2 cut(s) 138, 190
PfeI GAWTC 3 cut(s) 412, 676, 968
PkrI GCNGC 5 cut(s) 351, 502, 782, 785, 901
PshAI GACNNNNGTC 1 cut(s) 399
PsiI TTATAA 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 121
Psp1406I AACGTT 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 691, 841
PspGI CCWGG 2 cut(s) 691, 841
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 904
PsuI RGATCY 1 cut(s) 8
PvuII CAGCTG 2 cut(s) 783, 899
RsaI GTAC 3 cut(s) 463, 592, 883
RsaNI GTAC 3 cut(s) 462, 591, 882
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 6 cut(s) 90, 167, 618, 710, 762, 804
SatI GCNGC 5 cut(s) 350, 501, 781, 784, 900
Sau3AI GATC 4 cut(s) 8, 25, 67, 367
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 2 cut(s) 463, 592
ScrFI CCNGG 3 cut(s) 294, 693, 843
SduI GDGCHC 2 cut(s) 121, 700
SfaNI GCATC 2 cut(s) 696, 842
SfcI CTRYAG 1 cut(s) 900
SinI GGWCC 1 cut(s) 47
SpeI ACTAGT 2 cut(s) 458, 587
Sse9I AATT 7 cut(s) 178, 209, 521, 532, 553, 812, 821
SseBI AGGCCT 2 cut(s) 138, 190
SsiI CCGC 1 cut(s) 642
SspI AATATT 2 cut(s) 616, 760
SspMI CTAG 3 cut(s) 459, 509, 588
SstI GAGCTC 1 cut(s) 121
StuI AGGCCT 2 cut(s) 138, 190
StyD4I CCNGG 3 cut(s) 292, 691, 841
StyI CCWWGG 4 cut(s) 50, 103, 386, 467
TaiI ACGT 1 cut(s) 444
TaqI TCGA 1 cut(s) 870
TasI AATT 7 cut(s) 178, 209, 521, 532, 553, 812, 821
TatI WGTACW 3 cut(s) 461, 590, 881
TfiI GAWTC 3 cut(s) 412, 676, 968
Tru1I TTAA 6 cut(s) 90, 167, 618, 710, 762, 804
Tru9I TTAA 6 cut(s) 90, 167, 618, 710, 762, 804
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 5 cut(s) 349, 500, 780, 783, 899
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 236, 324
TspRI CASTG 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 3 cut(s) 209, 532, 553
XceI RCATGY 1 cut(s) 544
XspI CTAG 3 cut(s) 459, 509, 588
ZrmI AGTACT 2 cut(s) 463, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.