Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000254

Physical Location & Seq

Genomic Coordinates Forward (+)

65158396 .. 65158602

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCTTAATTTCTTTGAATTTCATTCCATACAATACATTCATCGGGAGCGAAATATGGTAGCTGATGGCTTAGCTAAAAGAAGTACTGATCAAGAGCTTGGATTATGCAGGTGTCCTTCAGTTCCTTCCTTTATTTGTCAAGCCATGCTTGATGACATTGATGGCTTTGCTAGGCCAAGAGTGTTCAGATCAGTTGAGGCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

68

Amino Acids

7.85

Weight (kDa)

6.03

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis	pycom04g06850
rosa_chinensis	RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora	Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii	Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa	Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha	Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana	Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	99
Acc36I	ACCTGC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	3 cut(s)	62, 74, 97
AluI	AGCT	3 cut(s)	62, 74, 97
AoxI	GGCC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	17
BccI	CCATC	2 cut(s)	59, 155
BclI	TGATCA	1 cut(s)	88
BfaI	CTAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	99
BlpI	GCTNAGC	1 cut(s)	70
BmcAI	AGTACT	1 cut(s)	85
Bpu1102I	GCTNAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	88, 188
Bsp1720I	GCTNAGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	99
BssMI	GATC	2 cut(s)	88, 188
BstDEI	CTNAG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	91, 191
BstMBI	GATC	2 cut(s)	88, 188
BsuRI	GGCC	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	8 cut(s)	62, 69, 74, 97, 143, 165, 175, 200
CviKI_1	RGCY	8 cut(s)	62, 69, 74, 97, 143, 165, 175, 200
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	2 cut(s)	90, 190
DpnII	GATC	2 cut(s)	88, 188
Eco57I	CTGAAG	1 cut(s)	102
FaeI	CATG	1 cut(s)	148
FaiI	YATR	4 cut(s)	29, 56, 106, 146
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	88
FspBI	CTAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	2 cut(s)	44, 92
HpyAV	CCTTC	2 cut(s)	126, 135
HpyCH4V	TGCA	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 188
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	1 cut(s)	94
MaeI	CTAG	1 cut(s)	171
MalI	GATC	2 cut(s)	90, 190
MboI	GATC	2 cut(s)	88, 188
MluCI	AATT	2 cut(s)	7, 17
MnlI	CCTC	1 cut(s)	190
MseI	TTAA	1 cut(s)	6
NdeII	GATC	2 cut(s)	88, 188
NlaIII	CATG	1 cut(s)	148
PaqCI	CACCTGC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	88, 188
ScaI	AGTACT	1 cut(s)	85
SetI	ASST	4 cut(s)	64, 76, 99, 113
SgeI	CNNG	9 cut(s)	56, 104, 110, 121, 152, 157, 161, 183, 189
Sse9I	AATT	2 cut(s)	7, 17
SspMI	CTAG	1 cut(s)	171
TasI	AATT	2 cut(s)	7, 17
TatI	WGTACW	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	11, 29
XapI	RAATTY	1 cut(s)	17
XspI	CTAG	1 cut(s)	171
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.