FvH4_6g10681

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000254
Physical Location & Seq
Reverse (-)
6415144 .. 6416903
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10681.t1

Sequence Viewer

Length: 1137 bp
ATGGGTTACTGGAAACCTGTCAAGCCTTCTCAGTCTGGACCTTATATTTCTCATCTATTCTTCGTCGATGATTTGATATTGTTTTCTGAAGCAAGTACTCAACAGGCTCATGTTATGAAGAAGGTTATGGACTTGTTTTGCAATCTCTCAGGCCAATCAATAAGTTTTGAAAAATCTACAGTTTATTGCTCTCCAAATACTAGGTCTGCTCTTGCTAAAGATATCAGTGCAATTTGTGGCTCTCCTCTAACTGATGATCTTGGTGTCTATCTTGGTATGTCTCTTATTCGTTCAAGAGTCACTGCTGCTACTTATGCTAACTTGGTAGATAAGGTTCAATCCAGGCTTGCTAGCTGGAAAAGTAAGACTCTCAACATGGCAGGCAGACTTACTTTAATCTCGCCAAAGTGTTTTGGTGTTCTGGGTATTAAAAAGACAAGAGATATGAATCAAGCAATGTTGGCTAAAGCTAGTTGGAGAATGGTTCAAGAAGATAAAGGGTTGTGGAATGAAATTTTTCAAAAGAAATTTGCTGAAAAAGGTATTAAGTGGAGAGTGGGAAATGGTTGTAGTATCAGATTCTGGACTGATAGCTGGTCTCCTTGTGGTTATTTGATTGATTTAGCTTTAAATCAAGATGCTATTGATTTAAATGATGTTGTCAAAGATTTTTGGACTGATCAGTCTTGGAATATGGATCTTCTCCTCTCTCAACTGCTTGTTGATGTGGTGAATATTATTAATGCCATCCTCATTGCTACCTCTAATACTCAAGATAAAATGATTTGGGGAGGAACTGCAAAGAGGGCTCATAGAAGGCTTACTGTGAATTTTTCCTGTCAGGGTATTTTTGAGGAATCTTATCGGTATCTGTATAATATTGATGATGTTATCCTCAATTATGCTTCTGAGTGGCTCAAGGCTTCTACCAAACCCAAGCTTCAAGTGGCTAGGCATATGGAGATGTTGTCTTGGATTAAGCCTAGATCTGGGACTTCTAAATTAAATGTGGATGGTTCAAGGAATAGAATTGGTGATATTGGTGCTGGAGGTGTTATAAGAGATCATACTAGAGTTTTGATTCGAGGTTTCATAGTGAATATTGGTGCTGGAGAAGTGCTTCAAGCTGAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

379

Amino Acids

42.4

Weight (kDa)

9.25

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1058
AasI GACNNNNNNGTC 1 cut(s) 682
AclWI GGATC 1 cut(s) 705
AcsI RAATTY 3 cut(s) 513, 527, 829
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 989
AgsI TTSAA 8 cut(s) 170, 294, 338, 488, 521, 944, 1020, 1124
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 6 cut(s) 354, 470, 594, 626, 940, 1127
AluI AGCT 6 cut(s) 354, 470, 594, 626, 940, 1127
Alw26I GTCTC 2 cut(s) 285, 603
AlwI GGATC 1 cut(s) 705
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 2 cut(s) 151, 1131
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 3 cut(s) 513, 527, 829
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AseI ATTAAT 1 cut(s) 741
Asp700I GAANNNNTTC 2 cut(s) 516, 1119
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 742, 1046
AsuNHI GCTAGC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 811
BbvCI CCTCAGC 1 cut(s) 1128
BbvI GCAGC 1 cut(s) 292
BccI CCATC 2 cut(s) 755, 1007
BciT130I CCWGG 1 cut(s) 343
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 2 cut(s) 285, 603
BfaI CTAG 6 cut(s) 201, 351, 471, 951, 984, 1071
BfmI CTRYAG 1 cut(s) 177
BglII AGATCT 1 cut(s) 986
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmcAI AGTACT 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 1 cut(s) 628
BmtI GCTAGC 1 cut(s) 354
BpmI CTGGAG 2 cut(s) 1068, 1131
Bpu10I CCTNAGC 1 cut(s) 1128
BpuEI CTTGAG 2 cut(s) 756, 902
BsaBI GATNNNNATC 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 603
BsaXI ACNNNNNCTCC 2 cut(s) 953, 983
Bsc4I CCNNNNNNNGG 1 cut(s) 989
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 2 cut(s) 462, 753
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 1 cut(s) 343
BseGI GGATG 2 cut(s) 747, 1018
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 989
BseMI GCAATG 2 cut(s) 462, 753
BseMII CTCAG 4 cut(s) 44, 162, 900, 1119
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 2 cut(s) 234, 695
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 2 cut(s) 153, 1133
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 1 cut(s) 989
BsmAI GTCTC 2 cut(s) 285, 603
BsmFI GGGAC 1 cut(s) 1006
BsnI GGCC 2 cut(s) 153, 1133
Bso31I GGTCTC 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 811
Bsp143I GATC 5 cut(s) 256, 679, 697, 986, 1063
BspANI GGCC 2 cut(s) 153, 1133
BspCNI CTCAG 4 cut(s) 43, 161, 901, 1120
BspOI GCTAGC 1 cut(s) 354
BspPI GGATC 1 cut(s) 705
BspTNI GGTCTC 1 cut(s) 603
BsrDI GCAATG 2 cut(s) 462, 753
BsrI ACTGG 1 cut(s) 14
BssMI GATC 5 cut(s) 256, 679, 697, 986, 1063
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 181, 826
BstC8I GCNNGC 3 cut(s) 348, 352, 382
BstDEI CTNAG 4 cut(s) 30, 148, 909, 1128
BstF5I GGATG 2 cut(s) 747, 1018
BstKTI GATC 5 cut(s) 259, 682, 700, 989, 1066
BstMAI GTCTC 2 cut(s) 285, 603
BstMBI GATC 5 cut(s) 256, 679, 697, 986, 1063
BstMWI GCNNNNNNNGC 3 cut(s) 314, 461, 806
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 2 cut(s) 697, 986
BstYI RGATCY 2 cut(s) 697, 986
BsuRI GGCC 2 cut(s) 153, 1133
BtsCI GGATG 2 cut(s) 747, 1018
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 232, 300
Cac8I GCNNGC 3 cut(s) 348, 352, 382
CaiI CAGNNNCTG 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 96
CviAII CATG 2 cut(s) 110, 376
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 4 cut(s) 30, 148, 909, 1128
DpnI GATC 5 cut(s) 258, 681, 699, 988, 1065
DpnII GATC 5 cut(s) 256, 679, 697, 986, 1063
DraI TTTAAA 2 cut(s) 630, 651
DrdI GACNNNNNNGTC 1 cut(s) 682
DseDI GACNNNNNNGTC 1 cut(s) 682
Eco147I AGGCCT 1 cut(s) 1133
Eco24I GRGCYC 1 cut(s) 811
Eco31I GGTCTC 1 cut(s) 603
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 341
EcoRV GATATC 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 811
FaeI CATG 2 cut(s) 113, 379
FaqI GGGAC 1 cut(s) 1006
FatI CATG 2 cut(s) 109, 375
FauNDI CATATG 1 cut(s) 957
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 734, 1025
FriOI GRGCYC 1 cut(s) 811
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 6 cut(s) 201, 351, 471, 951, 984, 1071
GluI GCNGC 1 cut(s) 306
GsuI CTGGAG 2 cut(s) 1068, 1131
HaeIII GGCC 2 cut(s) 153, 1133
Hin1II CATG 2 cut(s) 113, 379
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 6 cut(s) 297, 367, 448, 579, 857, 1081
HphI GGTGA 2 cut(s) 742, 1046
Hpy188I TCNGA 3 cut(s) 88, 578, 910
Hpy188III TCNNGA 6 cut(s) 36, 294, 488, 583, 635, 773
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 3 cut(s) 36, 115, 810
HpyCH4III ACNGT 2 cut(s) 181, 826
HpyCH4V TGCA 3 cut(s) 141, 230, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 461, 806
HpyF3I CTNAG 4 cut(s) 30, 148, 909, 1128
Hsp92II CATG 2 cut(s) 113, 379
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 5 cut(s) 256, 679, 697, 986, 1063
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 628
MaeI CTAG 6 cut(s) 201, 351, 471, 951, 984, 1071
MaeIII GTNAC 2 cut(s) 5, 298
MalI GATC 5 cut(s) 258, 681, 699, 988, 1065
MboI GATC 5 cut(s) 256, 679, 697, 986, 1063
MboII GAAGA 4 cut(s) 52, 130, 503, 692
MflI RGATCY 2 cut(s) 697, 986
MhlI GDGCHC 1 cut(s) 811
MluCI AATT 7 cut(s) 231, 513, 527, 829, 898, 1001, 1029
MlyI GAGTC 2 cut(s) 306, 361
MmeI TCCRAC 1 cut(s) 455
MroXI GAANNNNTTC 2 cut(s) 516, 1119
MseI TTAA 8 cut(s) 395, 429, 546, 629, 650, 741, 978, 1004
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 3 cut(s) 314, 461, 806
NdeI CATATG 1 cut(s) 957
NdeII GATC 5 cut(s) 256, 679, 697, 986, 1063
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 2 cut(s) 113, 379
NmuCI GTSAC 1 cut(s) 298
PceI AGGCCT 1 cut(s) 1133
PdmI GAANNNNTTC 2 cut(s) 516, 1119
PfeI GAWTC 4 cut(s) 448, 579, 857, 1081
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 2 cut(s) 305, 361
PpsI GAGTC 2 cut(s) 305, 361
PshBI ATTAAT 1 cut(s) 741
PsiI TTATAA 1 cut(s) 1058
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspPI GGNCC 1 cut(s) 38
PsrI GAACNNNNNNTAC 2 cut(s) 318, 350
PstNI CAGNNNCTG 1 cut(s) 582
PsuI RGATCY 2 cut(s) 697, 986
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 8 cut(s) 395, 429, 546, 629, 650, 741, 978, 1004
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 5 cut(s) 256, 679, 697, 986, 1063
Sau96I GGNCC 1 cut(s) 38
ScaI AGTACT 1 cut(s) 97
SchI GAGTC 2 cut(s) 306, 361
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 811
SfaNI GCATC 1 cut(s) 628
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 38
SmiI ATTTAAAT 1 cut(s) 651
SmlI CTYRAG 2 cut(s) 771, 917
SmoI CTYRAG 2 cut(s) 771, 917
Sse9I AATT 7 cut(s) 231, 513, 527, 829, 898, 1001, 1029
SseBI AGGCCT 1 cut(s) 1133
SspI AATATT 3 cut(s) 736, 880, 1102
SspMI CTAG 6 cut(s) 201, 351, 471, 951, 984, 1071
StuI AGGCCT 1 cut(s) 1133
StyD4I CCNGG 1 cut(s) 341
SwaI ATTTAAAT 1 cut(s) 651
TaaI ACNGT 2 cut(s) 181, 826
TaqI TCGA 2 cut(s) 66, 1084
TasI AATT 7 cut(s) 231, 513, 527, 829, 898, 1001, 1029
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 4 cut(s) 448, 579, 857, 1081
Tru1I TTAA 8 cut(s) 395, 429, 546, 629, 650, 741, 978, 1004
Tru9I TTAA 8 cut(s) 395, 429, 546, 629, 650, 741, 978, 1004
TscAI CASTG 2 cut(s) 232, 307
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 4 cut(s) 131, 461, 525, 1081
TspRI CASTG 2 cut(s) 232, 307
VpaK11BI GGWCC 1 cut(s) 38
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 3 cut(s) 513, 527, 829
XcmI CCANNNNNNNNNTGG 1 cut(s) 943
XmnI GAANNNNTTC 2 cut(s) 516, 1119
XspI CTAG 6 cut(s) 201, 351, 471, 951, 984, 1071
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.