Rmu_sc0000706.1_g000044

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000706.1
OG0000254
Physical Location & Seq
Reverse (-)
186612 .. 187778
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000706.1_g000044.1.cds

Sequence Viewer

Length: 1071 bp
atggtcccaggtgacattgtcaatcaaatcattaatattcctactggttttgataattgtagttgtgactctttgatttggggagctacatctaatggttgtttcactgtcaagtctgcctataattctaactttgattctctcagccttcagcatcatcaatggacagttttttggaagagcaatgtccctcctaagctgaaaactttcctctgggttgccctccatagaaagtttctaactaatgttcaaagagttaaacgaggtttcacttccacctccttatgtcctatttgcaagactgctgatgaaactttccacttgtttagggattgtcctaggtcttttgctatctggaatgcttttctcaagcctggtattatccttaactctttctctctggattggaatggatgggtggctgcccaattgcattgccagattgtgatcaagaataatattaaatggtgcaatctctttatttttatttgttggttcatctggaaatggagaaataatgatgtttttgagccaaattttatcatgcccgtttgtcctgacaaagtaatttggagttatgctgaagaatggactagtgctaactttaagctaaatactgatatagtccacatatataccgtgcttgcttggaagaaacctattgataatttttacaagttatatattgatgggactagatcttcgtcaactggcaaaattggtgctgggggtgttatcagggatcatcttggtaattggatcactggtttccaagttaatttgggaattggggagatccttgatctaatgcagaaagctgaattctctcttcaccctcttggttctctcctcaagggctgctcaaatattatggatgctatggggaatgctcaactctctcacatcttcagagagtgcaatatgacggctgactctttggctaagaacagcatcaatcatgagcttggtccaatcatttttgagtaccctcctgttcatgctgcccaggcctatcttgatgacatctctgctgtctctagagcaaggagatgttcctgctctaactcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

356

Amino Acids

40.42

Weight (kDa)

8.48

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 750, 767, 790
AcsI RAATTY 2 cut(s) 535, 821
AcuI CTGAAG 3 cut(s) 134, 603, 892
AfaI GTAC 1 cut(s) 986
AgsI TTSAA 1 cut(s) 251
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 3 cut(s) 7, 373, 1005
AluBI AGCT 5 cut(s) 86, 199, 610, 818, 964
AluI AGCT 5 cut(s) 86, 199, 610, 818, 964
Alw26I GTCTC 1 cut(s) 1039
AlwI GGATC 3 cut(s) 750, 767, 790
AoxI GGCC 1 cut(s) 1008
ApeKI GCWGC 3 cut(s) 422, 858, 1001
ApoI RAATTY 2 cut(s) 535, 821
ArsI GACNNNNNNTTYG 2 cut(s) 685, 717
AseI ATTAAT 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 206
AspA2I CCTAGG 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 4, 968
AsuHPI GGTGA 2 cut(s) 23, 824
AvaII GGWCC 2 cut(s) 4, 968
AvrII CCTAGG 1 cut(s) 338
BbvI GCAGC 3 cut(s) 409, 845, 988
BccI CCATC 2 cut(s) 408, 683
BceAI ACGGC 1 cut(s) 942
BciT130I CCWGG 3 cut(s) 9, 375, 1007
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 1039
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 5 cut(s) 339, 594, 696, 1038, 1069
BglII AGATCT 1 cut(s) 698
BisI GCNGC 3 cut(s) 423, 859, 1002
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 3 cut(s) 424, 860, 1003
Bme1390I CCNGG 3 cut(s) 9, 375, 1007
Bme18I GGWCC 2 cut(s) 4, 968
BmgT120I GGNCC 2 cut(s) 4, 968
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 9, 375, 1007
BmsI GCATC 3 cut(s) 163, 865, 960
Bpu10I CCTNAGC 1 cut(s) 195
BpuEI CTTGAG 2 cut(s) 353, 836
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 7, 338, 1005
Bse1I ACTGG 3 cut(s) 49, 715, 769
Bse3DI GCAATG 2 cut(s) 190, 433
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 3 cut(s) 9, 375, 1007
BseDI CCNNGG 3 cut(s) 7, 338, 1005
BseGI GGATG 2 cut(s) 419, 880
BseJI GATNNNNATC 1 cut(s) 446
BseMI GCAATG 2 cut(s) 190, 433
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 3 cut(s) 49, 715, 769
BseRI GAGGAG 1 cut(s) 839
BseXI GCAGC 3 cut(s) 409, 845, 988
BseYI CCCAGC 1 cut(s) 725
BshFI GGCC 1 cut(s) 1010
BslFI GGGAC 2 cut(s) 173, 706
BsmAI GTCTC 1 cut(s) 1039
BsmFI GGGAC 2 cut(s) 173, 706
BsmI GAATGC 2 cut(s) 364, 892
BsnI GGCC 1 cut(s) 1010
Bsp143I GATC 6 cut(s) 447, 698, 742, 759, 795, 802
BspANI GGCC 1 cut(s) 1010
BspCNI CTCAG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 3 cut(s) 750, 767, 790
BspQI GCTCTTC 1 cut(s) 173
BsrDI GCAATG 2 cut(s) 190, 433
BsrI ACTGG 3 cut(s) 49, 715, 769
BssECI CCNNGG 3 cut(s) 7, 338, 1005
BssMI GATC 6 cut(s) 447, 698, 742, 759, 795, 802
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 3 cut(s) 9, 375, 1007
Bst4CI ACNGT 3 cut(s) 109, 169, 640
Bst6I CTCTTC 2 cut(s) 173, 834
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 3 cut(s) 143, 195, 942
BstF5I GGATG 2 cut(s) 419, 880
BstKTI GATC 6 cut(s) 450, 701, 745, 762, 798, 805
BstMAI GTCTC 1 cut(s) 1039
BstMBI GATC 6 cut(s) 447, 698, 742, 759, 795, 802
BstMWI GCNNNNNNNGC 1 cut(s) 1007
BstNI CCWGG 3 cut(s) 9, 375, 1007
BstSCI CCNGG 3 cut(s) 7, 373, 1005
BstV1I GCAGC 3 cut(s) 409, 845, 988
BstX2I RGATCY 2 cut(s) 698, 795
BstYI RGATCY 2 cut(s) 698, 795
BsuRI GGCC 1 cut(s) 1010
BtsCI GGATG 2 cut(s) 419, 880
BtsIMutI CAGTG 2 cut(s) 105, 762
Cac8I GCNNGC 1 cut(s) 645
CciI TCATGA 1 cut(s) 958
Cfr13I GGNCC 2 cut(s) 4, 968
Csp6I GTAC 1 cut(s) 985
CviAII CATG 3 cut(s) 544, 959, 998
CviQI GTAC 1 cut(s) 985
DdeI CTNAG 3 cut(s) 143, 195, 942
DpnI GATC 6 cut(s) 449, 700, 744, 761, 797, 804
DpnII GATC 6 cut(s) 447, 698, 742, 759, 795, 802
Eam1104I CTCTTC 2 cut(s) 173, 834
EarI CTCTTC 2 cut(s) 173, 834
Eco130I CCWWGG 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 1010
Eco47I GGWCC 2 cut(s) 4, 968
Eco57I CTGAAG 3 cut(s) 134, 603, 892
EcoRI GAATTC 1 cut(s) 821
EcoRII CCWGG 3 cut(s) 7, 373, 1005
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 3 cut(s) 547, 962, 1001
FaqI GGGAC 2 cut(s) 173, 706
FatI CATG 3 cut(s) 543, 958, 997
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 423, 859, 1002
FokI GGATG 2 cut(s) 426, 887
Fsp4HI GCNGC 3 cut(s) 423, 859, 1002
FspBI CTAG 5 cut(s) 339, 594, 696, 1038, 1069
GluI GCNGC 3 cut(s) 423, 859, 1002
GsaI CCCAGC 1 cut(s) 729
HaeIII GGCC 1 cut(s) 1010
Hin1II CATG 3 cut(s) 547, 962, 1001
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HinfI GANTC 3 cut(s) 68, 137, 932
HphI GGTGA 2 cut(s) 23, 824
Hpy166II GTNNAC 2 cut(s) 628, 708
Hpy188I TCNGA 1 cut(s) 911
Hpy188III TCNNGA 8 cut(s) 355, 401, 451, 502, 557, 959, 1016, 1038
Hpy8I GTNNAC 2 cut(s) 628, 708
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 109, 169, 640
HpyCH4V TGCA 5 cut(s) 297, 433, 471, 811, 918
HpyF10VI GCNNNNNNNGC 1 cut(s) 1007
HpyF3I CTNAG 3 cut(s) 143, 195, 942
Hsp92II CATG 3 cut(s) 547, 962, 1001
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 6 cut(s) 447, 698, 742, 759, 795, 802
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 83
Lsp1109I GCAGC 3 cut(s) 409, 845, 988
LweI GCATC 3 cut(s) 163, 865, 960
MaeI CTAG 5 cut(s) 339, 594, 696, 1038, 1069
MaeIII GTNAC 2 cut(s) 11, 65
MalI GATC 6 cut(s) 449, 700, 744, 761, 797, 804
MboI GATC 6 cut(s) 447, 698, 742, 759, 795, 802
MboII GAAGA 6 cut(s) 190, 596, 664, 693, 821, 898
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 2 cut(s) 698, 795
MlyI GAGTC 2 cut(s) 62, 926
MnlI CCTC 8 cut(s) 201, 221, 233, 257, 289, 846, 860, 999
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 6 cut(s) 33, 258, 387, 462, 606, 777
MspR9I CCNGG 3 cut(s) 9, 375, 1007
MunI CAATTG 1 cut(s) 428
Mva1269I GAATGC 2 cut(s) 364, 892
MvaI CCWGG 3 cut(s) 9, 375, 1007
MwoI GCNNNNNNNGC 1 cut(s) 1007
NdeII GATC 6 cut(s) 447, 698, 742, 759, 795, 802
NlaIII CATG 3 cut(s) 547, 962, 1001
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 11, 65
PagI TCATGA 1 cut(s) 958
PceI AGGCCT 1 cut(s) 1010
PciSI GCTCTTC 1 cut(s) 173
PctI GAATGC 2 cut(s) 364, 892
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 137
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 424, 860, 1003
PleI GAGTC 2 cut(s) 62, 926
PpsI GAGTC 2 cut(s) 62, 926
PshBI ATTAAT 1 cut(s) 33
Psp6I CCWGG 3 cut(s) 7, 373, 1005
PspFI CCCAGC 1 cut(s) 725
PspGI CCWGG 3 cut(s) 7, 373, 1005
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 968
PsuI RGATCY 2 cut(s) 698, 795
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 1 cut(s) 986
RsaNI GTAC 1 cut(s) 985
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 6 cut(s) 33, 258, 387, 462, 606, 777
SatI GCNGC 3 cut(s) 423, 859, 1002
Sau3AI GATC 6 cut(s) 447, 698, 742, 759, 795, 802
Sau96I GGNCC 2 cut(s) 4, 968
SchI GAGTC 2 cut(s) 62, 926
ScrFI CCNGG 3 cut(s) 9, 375, 1007
SfaNI GCATC 3 cut(s) 163, 865, 960
SinI GGWCC 2 cut(s) 4, 968
SmlI CTYRAG 2 cut(s) 368, 851
SmoI CTYRAG 2 cut(s) 368, 851
SpeI ACTAGT 1 cut(s) 593
SseBI AGGCCT 1 cut(s) 1010
SspI AATATT 3 cut(s) 37, 460, 868
SspMI CTAG 5 cut(s) 339, 594, 696, 1038, 1069
StuI AGGCCT 1 cut(s) 1010
StyD4I CCNGG 3 cut(s) 7, 373, 1005
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 3 cut(s) 109, 169, 640
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 6 cut(s) 33, 258, 387, 462, 606, 777
Tru9I TTAA 6 cut(s) 33, 258, 387, 462, 606, 777
TscAI CASTG 2 cut(s) 112, 769
TseFI GTSAC 2 cut(s) 11, 65
TseI GCWGC 3 cut(s) 422, 858, 1001
Tsp45I GTSAC 2 cut(s) 11, 65
TspDTI ATGAA 3 cut(s) 324, 487, 986
TspRI CASTG 2 cut(s) 112, 769
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 4, 968
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 2 cut(s) 535, 821
XbaI TCTAGA 1 cut(s) 1037
XmaJI CCTAGG 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 5 cut(s) 339, 594, 696, 1038, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.