FvH4_2g12061

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000254
Physical Location & Seq
Forward (+)
10547571 .. 10548471
901 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12061.t1

Sequence Viewer

Length: 624 bp
ATGCCTCTATGCCCTGAGAAGATAATTTGGGAGTATGCCTTGGAATGGAAAAAGGCTCATTCGAGATCTAGTAATTCTGTGAATTTCAGCTACACAATGCTATCCTGGACTATGCCCCCTCAGAGTTATTACAAATTGAATATTGATGGTACTAGAGTTTCTAGCTCTGGTATGATTGGAGCTGGTGGTGTTATTAGAAACCATTCTGATGCTTGGATTACTGGCTTTCAAATTAATCTTGGGGTTGGTGCCATTGATGCTGAGGCATGGGGCCTGTTTCATGGCTTAAAGTTGGCTTCTAATCTGCACATTTCAAAGCTTGAGATTGAATCTGACTCTGCTATCCTTGTGCATCTTATGAAAAGTGCCAATCTCTCTCTCCATCCCCTGGGATCTCTTCTCAATGGTTGCAAAAGCATGATGTCCCAAATGGATGATGTGAAGCTCTCTCATGTGTTCAGAGAGTCCAACATGACAGCTGATGTCCTAGCAAAGTGCAGCATCTCAAATGATCTTGGTCTCATTCTTTTTGAGGAACCTCCAGCTCATGCCATTCTAGTTTTTCTTGATGATTTAGTTGCTGTTACTAGAGCTAGGAGAACAGGCTTTTGTTTTAGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

208

Amino Acids

22.8

Weight (kDa)

6.43

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 47 - 165 4.6e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 388
AclWI GGATC 1 cut(s) 400
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 2 cut(s) 45, 388
AgsI TTSAA 4 cut(s) 139, 230, 315, 329
AjnI CCWGG 2 cut(s) 104, 387
AluBI AGCT 8 cut(s) 90, 165, 182, 319, 445, 479, 545, 593
AluI AGCT 8 cut(s) 90, 165, 182, 319, 445, 479, 545, 593
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 1 cut(s) 400
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 498
ApoI RAATTY 1 cut(s) 82
AseI ATTAAT 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 271
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BanI GGYRCC 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 510
BccI CCATC 2 cut(s) 140, 390
BciT130I CCWGG 2 cut(s) 106, 389
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 7 cut(s) 69, 153, 162, 488, 557, 588, 594
BglII AGATCT 1 cut(s) 65
BisI GCNGC 1 cut(s) 499
BlsI GCNGC 1 cut(s) 500
Bme1390I CCNGG 2 cut(s) 106, 389
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 3 cut(s) 250, 272, 537
BmrFI CCNGG 2 cut(s) 106, 389
BmsI GCATC 4 cut(s) 199, 247, 361, 510
BpmI CTGGAG 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 3 cut(s) 39, 387, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 388
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 2 cut(s) 106, 389
BseDI CCNNGG 3 cut(s) 39, 387, 388
BseGI GGATG 2 cut(s) 382, 439
BseLI CCNNNNNNNGG 2 cut(s) 45, 388
BseMII CTCAG 3 cut(s) 6, 134, 252
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 510
BsgI GTGCAG 2 cut(s) 290, 517
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 248
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 2 cut(s) 45, 388
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 524
Bsp143I GATC 3 cut(s) 65, 392, 511
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 3 cut(s) 7, 133, 253
BspLI GGNNCC 3 cut(s) 250, 272, 537
BspPI GGATC 1 cut(s) 400
BspT107I GGYRCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 524
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 39, 387, 388
BssMI GATC 3 cut(s) 65, 392, 511
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 106, 389
Bst6I CTCTTC 1 cut(s) 402
BstDEI CTNAG 3 cut(s) 15, 120, 261
BstF5I GGATG 2 cut(s) 382, 439
BstKTI GATC 3 cut(s) 68, 395, 514
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 3 cut(s) 65, 392, 511
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNI CCWGG 2 cut(s) 106, 389
BstSCI CCNGG 2 cut(s) 104, 387
BstV1I GCAGC 1 cut(s) 510
BstX2I RGATCY 2 cut(s) 65, 392
BstYI RGATCY 2 cut(s) 65, 392
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 2 cut(s) 382, 439
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 150
CviAII CATG 6 cut(s) 267, 281, 418, 452, 472, 548
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 3 cut(s) 15, 120, 261
DpnI GATC 3 cut(s) 67, 394, 513
DpnII GATC 3 cut(s) 65, 392, 511
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 104, 387
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 6 cut(s) 270, 284, 421, 455, 475, 551
FaqI GGGAC 1 cut(s) 409
FatI CATG 6 cut(s) 266, 280, 417, 451, 471, 547
Fnu4HI GCNGC 1 cut(s) 499
FokI GGATG 2 cut(s) 369, 446
Fsp4HI GCNGC 1 cut(s) 499
FspBI CTAG 7 cut(s) 69, 153, 162, 488, 557, 588, 594
GluI GCNGC 1 cut(s) 499
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 1 cut(s) 273
Hin1II CATG 6 cut(s) 270, 284, 421, 455, 475, 551
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 3 cut(s) 329, 335, 464
Hpy188I TCNGA 4 cut(s) 123, 208, 334, 461
Hpy188III TCNNGA 2 cut(s) 63, 566
HpyCH4V TGCA 4 cut(s) 307, 352, 411, 498
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 3 cut(s) 15, 120, 261
Hsp92II CATG 6 cut(s) 270, 284, 421, 455, 475, 551
Kzo9I GATC 3 cut(s) 65, 392, 511
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 510
LweI GCATC 4 cut(s) 199, 247, 361, 510
MaeI CTAG 7 cut(s) 69, 153, 162, 488, 557, 588, 594
MaeIII GTNAC 1 cut(s) 583
MalI GATC 3 cut(s) 67, 394, 513
MboI GATC 3 cut(s) 65, 392, 511
MboII GAAGA 2 cut(s) 31, 389
MflI RGATCY 2 cut(s) 65, 392
MluCI AATT 5 cut(s) 24, 73, 82, 134, 231
MlyI GAGTC 2 cut(s) 329, 473
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 5 cut(s) 15, 129, 256, 526, 549
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 2 cut(s) 234, 287
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 479
MspR9I CCNGG 2 cut(s) 106, 389
MvaI CCWGG 2 cut(s) 106, 389
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 3 cut(s) 65, 392, 511
NlaIII CATG 6 cut(s) 270, 284, 421, 455, 475, 551
NlaIV GGNNCC 3 cut(s) 250, 272, 537
PasI CCCWGGG 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 1 cut(s) 500
PleI GAGTC 2 cut(s) 329, 472
PpsI GAGTC 2 cut(s) 329, 472
PshBI ATTAAT 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 104, 387
PspGI CCWGG 2 cut(s) 104, 387
PspN4I GGNNCC 3 cut(s) 250, 272, 537
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 2 cut(s) 65, 392
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 2 cut(s) 234, 287
SatI GCNGC 1 cut(s) 499
Sau3AI GATC 3 cut(s) 65, 392, 511
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 2 cut(s) 329, 473
ScrFI CCNGG 2 cut(s) 106, 389
SetI ASST 9 cut(s) 92, 167, 184, 321, 447, 481, 541, 547, 595
SfaNI GCATC 4 cut(s) 199, 247, 361, 510
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 5 cut(s) 24, 73, 82, 134, 231
SspI AATATT 1 cut(s) 142
SspMI CTAG 7 cut(s) 69, 153, 162, 488, 557, 588, 594
StyD4I CCNGG 2 cut(s) 104, 387
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 1 cut(s) 62
TasI AATT 5 cut(s) 24, 73, 82, 134, 231
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 2 cut(s) 234, 287
Tru9I TTAA 2 cut(s) 234, 287
TseI GCWGC 1 cut(s) 498
TspDTI ATGAA 2 cut(s) 269, 374
Van91I CCANNNNNTGG 1 cut(s) 388
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 7 cut(s) 69, 153, 162, 488, 557, 588, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.