RchiOBHm_Chr3g0486471

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000254
Physical Location & Seq
Forward (+)
33390907 .. 33391646
740 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45097

Sequence Viewer

Length: 624 bp
ATGCCCGTTTGTCTTGACAAAGTAATTTGGAGTTATGCTGAAGAATGGACTAGTGCTAACTTCAAGTTAAATACTGATACAGTCCACAGATATACTGTGCTTACTTGGAAGAAACCTATTGCTAATTTTTACAAGTTAAATATTGATGGGACTAGATCTTCGTCAACTGGCAAAATTGGTGCTGGGGGTGTTATCAGGGATCATTTTGGTAATTGGATCACTGGTTTCCAAGTTAATTTGGGAATTGGGGAGATCCCTGATGTTGAAGCTTGGGGCTTACTCTATGGCCTTAAACTTGCCTTGAGTCTTCATATCTCTCACCTTGAAATTGAGTCTGACTCTGCCATTTTAGTGCAGCTAATGCAGAAAGCTGTATTCTCTCTCCACCCTCTCGGTTCCCTCCTCAAGGGCTGCTCAAATATTATGGATGCTATGGGGAATGCTCAACTCTCTCACATCTTCAAAGAGTGCAATATGACGGCTGACTCTTTGGCTAAGAACAGCATTAATCATGAGCTTGGTCTAATCATTTTTGAGTACCCTCCTGTTCATGCTGCCCAGCCCTATCTTGATGACATCTCTGCTGTCTCTAGAGCAAGGAGATGTTCCTGCTCTAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

207

Amino Acids

22.84

Weight (kDa)

6.43

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 47 - 167 4.2e-22 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 207, 224, 247
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 4 cut(s) 64, 266, 326, 463
AhlI ACTAGT 1 cut(s) 50
AluBI AGCT 4 cut(s) 269, 358, 371, 517
AluI AGCT 4 cut(s) 269, 358, 371, 517
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 3 cut(s) 207, 224, 247
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 3 cut(s) 355, 411, 554
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
AseI ATTAAT 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 299
BbvI GCAGC 3 cut(s) 367, 398, 541
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 495
BcoDI GTCTC 1 cut(s) 592
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 3 cut(s) 51, 153, 591
BglII AGATCT 1 cut(s) 155
BisI GCNGC 3 cut(s) 356, 412, 555
BlsI GCNGC 3 cut(s) 357, 413, 556
BmiI GGNNCC 1 cut(s) 397
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 299
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpuEI CTTGAG 2 cut(s) 322, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 172, 226
BseGI GGATG 1 cut(s) 433
BseLI CCNNNNNNNGG 1 cut(s) 406
BseNI ACTGG 2 cut(s) 172, 226
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 367, 398, 541
BseYI CCCAGC 2 cut(s) 182, 558
BsgI GTGCAG 1 cut(s) 374
BshFI GGCC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 1 cut(s) 288
Bsp143I GATC 4 cut(s) 155, 199, 216, 252
BspANI GGCC 1 cut(s) 288
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 3 cut(s) 207, 224, 247
BsrI ACTGG 2 cut(s) 172, 226
BssMI GATC 4 cut(s) 155, 199, 216, 252
Bst4CI ACNGT 2 cut(s) 82, 97
BstAPI GCANNNNNTGC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 495, 621
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 1 cut(s) 433
BstKTI GATC 4 cut(s) 158, 202, 219, 255
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 4 cut(s) 155, 199, 216, 252
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstV1I GCAGC 3 cut(s) 367, 398, 541
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 2 cut(s) 155, 252
BstYI RGATCY 2 cut(s) 155, 252
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 219
CciI TCATGA 1 cut(s) 511
Csp6I GTAC 1 cut(s) 538
CviAII CATG 2 cut(s) 512, 551
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 2 cut(s) 495, 621
DpnI GATC 4 cut(s) 157, 201, 218, 254
DpnII GATC 4 cut(s) 155, 199, 216, 252
Eco57I CTGAAG 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 404
FaeI CATG 2 cut(s) 515, 554
FaiI YATR 9 cut(s) 36, 93, 285, 312, 425, 434, 476, 513, 552
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 511, 550
Fnu4HI GCNGC 3 cut(s) 356, 412, 555
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 3 cut(s) 356, 412, 555
FspBI CTAG 3 cut(s) 51, 153, 591
GluI GCNGC 3 cut(s) 356, 412, 555
GsaI CCCAGC 2 cut(s) 186, 562
HaeIII GGCC 1 cut(s) 288
Hin1II CATG 2 cut(s) 515, 554
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 4 cut(s) 304, 332, 338, 485
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 85, 165
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 4 cut(s) 14, 512, 569, 591
Hpy8I GTNNAC 2 cut(s) 85, 165
HpyCH4III ACNGT 2 cut(s) 82, 97
HpyCH4V TGCA 3 cut(s) 355, 364, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 2 cut(s) 495, 621
Hsp92II CATG 2 cut(s) 515, 554
Kzo9I GATC 4 cut(s) 155, 199, 216, 252
LpnPI CCDG 7 cut(s) 153, 168, 181, 207, 270, 558, 572
Lsp1109I GCAGC 3 cut(s) 367, 398, 541
LweI GCATC 1 cut(s) 418
MaeI CTAG 3 cut(s) 51, 153, 591
MalI GATC 4 cut(s) 157, 201, 218, 254
MboI GATC 4 cut(s) 155, 199, 216, 252
MboII GAAGA 5 cut(s) 53, 121, 150, 299, 451
MflI RGATCY 2 cut(s) 155, 252
MluCI AATT 8 cut(s) 24, 124, 174, 211, 235, 243, 327, 616
MlyI GAGTC 4 cut(s) 313, 332, 341, 479
MnlI CCTC 4 cut(s) 399, 410, 413, 552
MseI TTAA 5 cut(s) 68, 137, 234, 291, 507
MslI CAYNNNNRTG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeII GATC 4 cut(s) 155, 199, 216, 252
NlaIII CATG 2 cut(s) 515, 554
NlaIV GGNNCC 1 cut(s) 397
PagI TCATGA 1 cut(s) 511
PctI GAATGC 1 cut(s) 445
PkrI GCNGC 3 cut(s) 357, 413, 556
PleI GAGTC 4 cut(s) 312, 332, 340, 479
PpsI GAGTC 4 cut(s) 312, 332, 340, 479
PshBI ATTAAT 1 cut(s) 507
PspFI CCCAGC 2 cut(s) 182, 558
PspN4I GGNNCC 1 cut(s) 397
PsuI RGATCY 2 cut(s) 155, 252
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 5 cut(s) 68, 137, 234, 291, 507
SatI GCNGC 3 cut(s) 356, 412, 555
Sau3AI GATC 4 cut(s) 155, 199, 216, 252
SchI GAGTC 4 cut(s) 313, 332, 341, 479
SetI ASST 6 cut(s) 118, 271, 324, 360, 373, 519
SfaNI GCATC 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 301, 404
SmoI CTYRAG 2 cut(s) 301, 404
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 8 cut(s) 24, 124, 174, 211, 235, 243, 327, 616
SspI AATATT 2 cut(s) 142, 421
SspMI CTAG 3 cut(s) 51, 153, 591
TaaI ACNGT 2 cut(s) 82, 97
TasI AATT 8 cut(s) 24, 124, 174, 211, 235, 243, 327, 616
Tru1I TTAA 5 cut(s) 68, 137, 234, 291, 507
Tru9I TTAA 5 cut(s) 68, 137, 234, 291, 507
TscAI CASTG 1 cut(s) 226
TseI GCWGC 3 cut(s) 355, 411, 554
TspDTI ATGAA 2 cut(s) 299, 539
TspRI CASTG 1 cut(s) 226
VspI ATTAAT 1 cut(s) 507
XagI CCTNNNNNAGG 1 cut(s) 404
XbaI TCTAGA 1 cut(s) 590
XspI CTAG 3 cut(s) 51, 153, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.