Rorug07G0095100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000254
Physical Location & Seq
Forward (+)
7483500 .. 7486146
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0095100.1

Sequence Viewer

Length: 1041 bp
ATGGCAGCCTTTTCTTATCAACATGTACTCCACCACCCCTTTCTCTTTGACTCTATTTTCTTTCCAGGCACTCCTACCAGTACTAATAGCAACAACGACCATTTCTCTCAATCTCAATACCCATCTGAGCCTTTAGTTGAGCAAATGAATATTCCTGTTGAGAGTGCAAGAGTTGCCGAGAGCAGCTCATGTATTGACCAGAGCTCCACAAAGATTGCAACTTTTAGTGACGATGAGCCTTCTGTGACCAAAAAACAGAGCCCAGAGTCCTCAGCTGTGGTGGATAAGCTTGAGACTGGTGAGCAGGTTACTCAGAAAGTGATGACTCCCATGGAAAGGAAGAGAAGAACCAGAAATGGGTCATCACCCAATTCTGCTCAATCCAAGGTCAAGAAGCCAAAGAAAGCTGAAGAGGAAAAGAAGCCCAAAGCTGAAAAGAAAGAGCAAGTGAAAGCTGTACAAGAAGTGGAACCTCCAACAGGTTACATTCATGTTAGAGCAAGAAGGGGTCAAGCTACAGATAGCCATAGCCTTGCAGAGAGGGTAAGAAGAGAAAAAATCAGTGAGAGGATGAAGATGTTGCAAAGACTTGTTCCTGGTTGTGACAAGGTAACCGGAAGGGCTGTGATGTTGGATGAGATTATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTTCTCTCAATGAAGCTTGCTTCTGTGAATCCAATGTTCTATGACTTTGGACCAGACCTTGGTGATTTGATGGTCAAACAAGAGGCATCACCATTTTCAACTGGACCACAATGCAGCCCAACACAGCCAACAGATTTTGCTGATACCTCTACCAATTTTGTCACCACCACCACTGCCGCCGCCACCAGCTTCACGGCGGCTACTAACAACTATCCTTTTCTGGATTCACTTCTACTTCAGCAATCGCAGAGGCCGACTGCCTTCCATCAGGACAGTGAGAGCCTATTGTGGGATGTGGAAGATCAAAGACAAAGCTTTCTTAATCCATCTGGGTTCAGCAACAACTTGGGTTCTTTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.59

Weight (kDa)

6.03

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 175 - 222 2.7e-06 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 180 - 224 4.7e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB7I CCANNNNNTGG 1 cut(s) 737
AciI CCGC 3 cut(s) 855, 858, 875
AcuI CTGAAG 2 cut(s) 429, 899
AfaI GTAC 3 cut(s) 27, 82, 459
AfiI CCNNNNNNNGG 5 cut(s) 336, 357, 479, 737, 967
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 777, 1036
AjnI CCWGG 2 cut(s) 64, 595
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 1 cut(s) 929
ApeKI GCWGC 3 cut(s) 5, 183, 792
AspS9I GGNCC 2 cut(s) 728, 782
AsuHPI GGTGA 5 cut(s) 311, 357, 752, 759, 832
AvaII GGWCC 2 cut(s) 728, 782
BanII GRGCYC 2 cut(s) 206, 263
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 271
BbvI GCAGC 3 cut(s) 17, 195, 804
BccI CCATC 4 cut(s) 130, 742, 951, 1012
BceAI ACGGC 1 cut(s) 888
BciT130I CCWGG 2 cut(s) 66, 597
BcoDI GTCTC 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 6 cut(s) 6, 184, 793, 855, 858, 876
BlsI GCNGC 6 cut(s) 7, 185, 794, 856, 859, 877
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 66, 597
Bme18I GGWCC 2 cut(s) 728, 782
BmgT120I GGNCC 2 cut(s) 728, 782
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 2 cut(s) 66, 597
BmsI GCATC 1 cut(s) 773
BplI GAGNNNNNCTC 4 cut(s) 170, 202, 668, 700
Bpu10I CCTNAGC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 330, 384, 736
BsaWI WCCGGW 1 cut(s) 614
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 188, 218
Bsc4I CCNNNNNNNGG 5 cut(s) 336, 357, 479, 737, 967
Bse1I ACTGG 3 cut(s) 78, 301, 784
BseBI CCWGG 2 cut(s) 66, 597
BseDI CCNNGG 3 cut(s) 330, 384, 736
BseGI GGATG 3 cut(s) 576, 640, 976
BseLI CCNNNNNNNGG 5 cut(s) 336, 357, 479, 737, 967
BseMII CTCAG 3 cut(s) 117, 285, 326
BseNI ACTGG 3 cut(s) 78, 301, 784
BseXI GCAGC 3 cut(s) 17, 195, 804
BshFI GGCC 1 cut(s) 931
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 5 cut(s) 336, 357, 479, 737, 967
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 643
BsnI GGCC 1 cut(s) 931
Bsp1286I GDGCHC 2 cut(s) 206, 263
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 1 cut(s) 979
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 3 cut(s) 855, 858, 875
BspANI GGCC 1 cut(s) 931
BspCNI CTCAG 3 cut(s) 118, 284, 325
BspLI GGNNCC 1 cut(s) 471
BspMI ACCTGC 1 cut(s) 295
BsrGI TGTACA 1 cut(s) 457
BsrI ACTGG 3 cut(s) 78, 301, 784
BssECI CCNNGG 3 cut(s) 330, 384, 736
BssMI GATC 1 cut(s) 979
BssT1I CCWWGG 3 cut(s) 330, 384, 736
Bst2UI CCWGG 2 cut(s) 66, 597
Bst4CI ACNGT 1 cut(s) 953
Bst6I CTCTTC 3 cut(s) 335, 405, 544
BstAPI GCANNNNNTGC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 3 cut(s) 126, 271, 312
BstDSI CCRYGG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 610
BstENI CCTNNNNNAGG 1 cut(s) 477
BstF5I GGATG 3 cut(s) 576, 640, 976
BstKTI GATC 1 cut(s) 982
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 979
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 2 cut(s) 66, 597
BstNSI RCATGY 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 64, 595
BstSFI CTRYAG 1 cut(s) 516
BstV1I GCAGC 3 cut(s) 17, 195, 804
BsuRI GGCC 1 cut(s) 931
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 3 cut(s) 576, 640, 976
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 3 cut(s) 568, 849, 958
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 696
Cfr13I GGNCC 2 cut(s) 728, 782
Csp6I GTAC 3 cut(s) 26, 81, 458
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 4 cut(s) 23, 189, 331, 491
CviQI GTAC 3 cut(s) 26, 81, 458
DdeI CTNAG 3 cut(s) 126, 271, 312
DpnI GATC 1 cut(s) 981
DpnII GATC 1 cut(s) 979
Eam1104I CTCTTC 3 cut(s) 335, 405, 544
EarI CTCTTC 3 cut(s) 335, 405, 544
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 330, 384, 736
Eco24I GRGCYC 2 cut(s) 206, 263
Eco47I GGWCC 2 cut(s) 728, 782
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 429, 899
Eco91I GGTNACC 1 cut(s) 610
EcoICRI GAGCTC 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoO65I GGTNACC 1 cut(s) 610
EcoRII CCWGG 2 cut(s) 64, 595
EcoT14I CCWWGG 3 cut(s) 330, 384, 736
EcoT38I GRGCYC 2 cut(s) 206, 263
ErhI CCWWGG 3 cut(s) 330, 384, 736
FaeI CATG 4 cut(s) 26, 192, 334, 494
FaiI YATR 7 cut(s) 24, 190, 332, 492, 528, 651, 720
FaqI GGGAC 1 cut(s) 643
FatI CATG 4 cut(s) 22, 188, 330, 490
Fnu4HI GCNGC 6 cut(s) 6, 184, 793, 855, 858, 876
FokI GGATG 3 cut(s) 583, 647, 983
FriOI GRGCYC 2 cut(s) 206, 263
Fsp4HI GCNGC 6 cut(s) 6, 184, 793, 855, 858, 876
GluI GCNGC 6 cut(s) 6, 184, 793, 855, 858, 876
HaeIII GGCC 1 cut(s) 931
HapII CCGG 1 cut(s) 615
Hin1II CATG 4 cut(s) 26, 192, 334, 494
HindIII AAGCTT 3 cut(s) 287, 692, 991
HinfI GANTC 5 cut(s) 50, 266, 325, 706, 902
HpaII CCGG 1 cut(s) 615
HphI GGTGA 5 cut(s) 311, 357, 752, 759, 832
Hpy188I TCNGA 2 cut(s) 127, 315
Hpy188III TCNNGA 3 cut(s) 391, 899, 947
HpyAV CCTTC 4 cut(s) 249, 498, 612, 949
HpyCH4III ACNGT 1 cut(s) 953
HpyCH4V TGCA 5 cut(s) 167, 218, 536, 583, 792
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 3 cut(s) 126, 271, 312
Hsp92II CATG 4 cut(s) 26, 192, 334, 494
Kzo9I GATC 1 cut(s) 979
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 3 cut(s) 17, 195, 804
LweI GCATC 1 cut(s) 773
MaeIII GTNAC 7 cut(s) 227, 244, 307, 482, 602, 610, 838
MalI GATC 1 cut(s) 981
MboI GATC 1 cut(s) 979
MboII GAAGA 6 cut(s) 352, 357, 422, 561, 586, 989
MhlI GDGCHC 2 cut(s) 206, 263
MluCI AATT 4 cut(s) 370, 646, 832, 1036
MlyI GAGTC 3 cut(s) 44, 275, 319
MmeI TCCRAC 2 cut(s) 500, 612
MnlI CCTC 8 cut(s) 280, 406, 483, 534, 561, 754, 835, 921
MseI TTAA 2 cut(s) 999, 1039
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 2 cut(s) 66, 597
MvaI CCWGG 2 cut(s) 66, 597
MwoI GCNNNNNNNGC 1 cut(s) 173
NcoI CCATGG 1 cut(s) 330
NdeII GATC 1 cut(s) 979
NlaIII CATG 4 cut(s) 26, 192, 334, 494
NlaIV GGNNCC 1 cut(s) 471
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 4 cut(s) 227, 244, 602, 838
NspI RCATGY 1 cut(s) 26
PciI ACATGT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 929
PfeI GAWTC 2 cut(s) 706, 902
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 6 cut(s) 7, 185, 794, 856, 859, 877
PleI GAGTC 3 cut(s) 44, 274, 319
PpsI GAGTC 3 cut(s) 44, 274, 319
PscI ACATGT 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 64, 595
PspEI GGTNACC 1 cut(s) 610
PspGI CCWGG 2 cut(s) 64, 595
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 2 cut(s) 728, 782
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 27, 82, 459
RsaNI GTAC 3 cut(s) 26, 81, 458
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 999, 1039
SatI GCNGC 6 cut(s) 6, 184, 793, 855, 858, 876
Sau3AI GATC 1 cut(s) 979
Sau96I GGNCC 2 cut(s) 728, 782
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 3 cut(s) 44, 275, 319
ScrFI CCNGG 2 cut(s) 66, 597
SduI GDGCHC 2 cut(s) 206, 263
SfaNI GCATC 1 cut(s) 773
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 2 cut(s) 728, 782
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 4 cut(s) 370, 646, 832, 1036
SsiI CCGC 3 cut(s) 855, 858, 875
SspI AATATT 1 cut(s) 151
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 64, 595
StyI CCWWGG 3 cut(s) 330, 384, 736
TaaI ACNGT 1 cut(s) 953
TasI AATT 4 cut(s) 370, 646, 832, 1036
TatI WGTACW 3 cut(s) 25, 80, 457
TauI GCSGC 3 cut(s) 857, 860, 878
TfiI GAWTC 2 cut(s) 706, 902
Tru1I TTAA 2 cut(s) 999, 1039
Tru9I TTAA 2 cut(s) 999, 1039
TscAI CASTG 3 cut(s) 568, 856, 958
TseFI GTSAC 4 cut(s) 227, 244, 602, 838
TseI GCWGC 3 cut(s) 5, 183, 792
Tsp45I GTSAC 4 cut(s) 227, 244, 602, 838
TspDTI ATGAA 4 cut(s) 161, 479, 587, 704
TspRI CASTG 3 cut(s) 568, 856, 958
Van91I CCANNNNNTGG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 728, 782
XagI CCTNNNNNAGG 1 cut(s) 477
XceI RCATGY 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.