Rmu_sc0023757.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023757.1
OG0000254
Physical Location & Seq
Reverse (-)
8819 .. 10178
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023757.1_g000002.1.cds

Sequence Viewer

Length: 507 bp
atgccatggagagccattgggttgtctacagaagccgttctcgaaaagagaagaggcaaaatcgttaataagattgaaattgaatctgactctgccattctcatcaaactcattgttgaaggttgtgaaagctcccatcctcttggaagcattctgaacagctgcaagtctctacttaatggttttgaagatgtgaagattaagcatgtttttagagaaagcaatatgacagcagatgccatggctaagagcagcctctctcatgatcctgggattgctgttgtgaagaacttggaagatgcacgttcacagattgatgaaacattcgcagctgctttgaaagacagaaagcctatttatatcggtcttcttcccgttacaaaggccagcaattgcctcattgagttggcagacttgtggttatgccttggcagtcatgccctctgcaaaaaggcctggtaccagaggaccacccacatttcattggatcttattggggtgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

168

Amino Acids

18.52

Weight (kDa)

7.66

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 459
AccB1I GGYRCC 1 cut(s) 459
AccI GTMKAC 1 cut(s) 26
AclWI GGATC 2 cut(s) 260, 495
AfaI GTAC 1 cut(s) 461
AgsI TTSAA 5 cut(s) 77, 83, 119, 188, 340
AjnI CCWGG 2 cut(s) 268, 455
AluBI AGCT 3 cut(s) 132, 162, 332
AluI AGCT 3 cut(s) 132, 162, 332
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 260, 495
AoxI GGCC 2 cut(s) 384, 453
ApeKI GCWGC 4 cut(s) 162, 252, 329, 332
Asp700I GAANNNNTTC 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 459
AspS9I GGNCC 1 cut(s) 468
AvaII GGWCC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 4 cut(s) 149, 264, 319, 341
BccI CCATC 1 cut(s) 144
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 2 cut(s) 270, 457
BcoDI GTCTC 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 4 cut(s) 163, 253, 330, 333
BlsI GCNGC 4 cut(s) 164, 254, 331, 334
Bme1390I CCNGG 2 cut(s) 270, 457
Bme18I GGWCC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 461
BmrFI CCNGG 2 cut(s) 270, 457
BmsI GCATC 2 cut(s) 226, 289
BpiI GAAGAC 1 cut(s) 359
BsaJI CCNNGG 4 cut(s) 5, 240, 269, 427
BseBI CCWGG 2 cut(s) 270, 457
BseDI CCNNGG 4 cut(s) 5, 240, 269, 427
BseGI GGATG 1 cut(s) 136
BseXI GCAGC 4 cut(s) 149, 264, 319, 341
BshFI GGCC 2 cut(s) 386, 455
BshNI GGYRCC 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 2 cut(s) 386, 455
Bsp143I GATC 2 cut(s) 265, 487
Bsp19I CCATGG 2 cut(s) 5, 240
BspANI GGCC 2 cut(s) 386, 455
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 461
BspPI GGATC 2 cut(s) 260, 495
BspT107I GGYRCC 1 cut(s) 459
BssECI CCNNGG 4 cut(s) 5, 240, 269, 427
BssMI GATC 2 cut(s) 265, 487
BssT1I CCWWGG 3 cut(s) 5, 240, 427
Bst2UI CCWGG 2 cut(s) 270, 457
Bst6I CTCTTC 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 2 cut(s) 5, 240
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 268, 490
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 2 cut(s) 265, 487
BstNI CCWGG 2 cut(s) 270, 457
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 268, 455
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 4 cut(s) 149, 264, 319, 341
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 143
BstYI RGATCY 1 cut(s) 487
BsuRI GGCC 2 cut(s) 386, 455
BtgI CCRYGG 2 cut(s) 5, 240
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 388
CciI TCATGA 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 468
Csp6I GTAC 1 cut(s) 460
CviAII CATG 5 cut(s) 6, 206, 241, 263, 437
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 267, 489
DpnII GATC 2 cut(s) 265, 487
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
Eco130I CCWWGG 3 cut(s) 5, 240, 427
Eco147I AGGCCT 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 268, 455
EcoT14I CCWWGG 3 cut(s) 5, 240, 427
ErhI CCWWGG 3 cut(s) 5, 240, 427
FaeI CATG 5 cut(s) 9, 209, 244, 266, 440
FaiI YATR 8 cut(s) 7, 207, 227, 242, 264, 360, 424, 438
FatI CATG 5 cut(s) 5, 205, 240, 262, 436
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 4 cut(s) 163, 253, 330, 333
FokI GGATG 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 163, 253, 330, 333
GluI GCNGC 4 cut(s) 163, 253, 330, 333
HaeIII GGCC 2 cut(s) 386, 455
Hin1II CATG 5 cut(s) 9, 209, 244, 266, 440
HinfI GANTC 2 cut(s) 83, 89
Hpy166II GTNNAC 2 cut(s) 27, 308
Hpy188I TCNGA 2 cut(s) 88, 156
Hpy188III TCNNGA 2 cut(s) 41, 263
Hpy8I GTNNAC 2 cut(s) 27, 308
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 165, 302, 447
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 5 cut(s) 9, 209, 244, 266, 440
KpnI GGTACC 1 cut(s) 463
Kzo9I GATC 2 cut(s) 265, 487
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 6 cut(s) 255, 282, 400, 442, 469, 476
Lsp1109I GCAGC 4 cut(s) 149, 264, 319, 341
LweI GCATC 2 cut(s) 226, 289
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 376
MalI GATC 2 cut(s) 267, 489
MboI GATC 2 cut(s) 265, 487
MboII GAAGA 7 cut(s) 63, 200, 208, 298, 308, 359, 362
MfeI CAATTG 1 cut(s) 391
MflI RGATCY 1 cut(s) 487
MluCI AATT 2 cut(s) 78, 391
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 6 cut(s) 47, 150, 266, 407, 452, 459
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 3 cut(s) 66, 177, 201
MspA1I CMGCKG 2 cut(s) 162, 332
MspR9I CCNGG 2 cut(s) 270, 457
MunI CAATTG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 150
MvaI CCWGG 2 cut(s) 270, 457
NcoI CCATGG 2 cut(s) 5, 240
NdeII GATC 2 cut(s) 265, 487
NlaIII CATG 5 cut(s) 9, 209, 244, 266, 440
NlaIV GGNNCC 1 cut(s) 461
NspI RCATGY 1 cut(s) 209
PagI TCATGA 1 cut(s) 262
PceI AGGCCT 1 cut(s) 455
PctI GAATGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 4 cut(s) 164, 254, 331, 334
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 268, 455
PspGI CCWGG 2 cut(s) 268, 455
PspN4I GGNNCC 1 cut(s) 461
PspPI GGNCC 1 cut(s) 468
PsuI RGATCY 1 cut(s) 487
PvuII CAGCTG 2 cut(s) 162, 332
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SaqAI TTAA 3 cut(s) 66, 177, 201
SatI GCNGC 4 cut(s) 163, 253, 330, 333
Sau3AI GATC 2 cut(s) 265, 487
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 270, 457
SetI ASST 5 cut(s) 124, 134, 164, 307, 334
SfaNI GCATC 2 cut(s) 226, 289
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 468
Sse9I AATT 2 cut(s) 78, 391
SseBI AGGCCT 1 cut(s) 455
StuI AGGCCT 1 cut(s) 455
StyD4I CCNGG 2 cut(s) 268, 455
StyI CCWWGG 3 cut(s) 5, 240, 427
TaiI ACGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 42
TaqII GACCGA 1 cut(s) 353
TasI AATT 2 cut(s) 78, 391
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 66, 177, 201
Tru9I TTAA 3 cut(s) 66, 177, 201
TseI GCWGC 4 cut(s) 162, 252, 329, 332
TspDTI ATGAA 2 cut(s) 333, 471
VpaK11BI GGWCC 1 cut(s) 468
XceI RCATGY 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.