Rroxscaffold_2G00119710

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000254
Physical Location & Seq
Forward (+)
51666532 .. 51667963
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119710.1

Sequence Viewer

Length: 195 bp
ATGACTTCGAATATTCAGAATTTGGAGATTGAATCAGATTCAGCTACTTTGGTGACTCTGTTGAGTGGTGAAAATATGGAGTTGCACCCCCTTGGTACCATTCTGCTCAATTGCAGCAGATCGATGAGGTCCTTTGATTCCTTACATCTTAAGCATATCCACAGAGAATGCAACATGGTTGCAGACTTATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.27

Weight (kDa)

5.33

Isoelectric Point (pI)

67.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 62 1.7e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 97
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 19
Asp718I GGTACC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 64, 80
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 149
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 97
Bpu14I TTCGAA 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 91
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 95
BshVI ATCGAT 1 cut(s) 122
BsmI GAATGC 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 1 cut(s) 119
BspDI ATCGAT 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 91
BstAFI CTTAAG 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 8
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 129
ClaI ATCGAT 1 cut(s) 122
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 175
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
CviQI GTAC 1 cut(s) 96
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 1 cut(s) 178
FaiI YATR 4 cut(s) 77, 156, 176, 190
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 178
HinfI GANTC 4 cut(s) 32, 38, 55, 137
HphI GGTGA 2 cut(s) 64, 80
Hpy188I TCNGA 2 cut(s) 18, 37
HpyCH4V TGCA 4 cut(s) 85, 114, 171, 182
Hsp92II CATG 1 cut(s) 178
KpnI GGTACC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MfeI CAATTG 1 cut(s) 109
MluCI AATT 2 cut(s) 19, 109
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 1 cut(s) 120
MseI TTAA 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 149
MunI CAATTG 1 cut(s) 109
Mva1269I GAATGC 1 cut(s) 173
NdeII GATC 1 cut(s) 119
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 52
NspV TTCGAA 1 cut(s) 8
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 32, 38, 137
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 129
PspPPI RGGWCCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 1 cut(s) 49
SetI ASST 2 cut(s) 46, 131
SfuI TTCGAA 1 cut(s) 8
SgeI CNNG 2 cut(s) 104, 187
SinI GGWCC 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 19, 109
SspI AATATT 1 cut(s) 13
StyI CCWWGG 1 cut(s) 91
TaqI TCGA 2 cut(s) 8, 122
TasI AATT 2 cut(s) 19, 109
TfiI GAWTC 3 cut(s) 32, 38, 137
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 52
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 129
XapI RAATTY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.