Rmu_sc0004368.1_g000033

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004368.1
OG0000254
Physical Location & Seq
Reverse (-)
141584 .. 141883
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004368.1_g000033.1.cds

Sequence Viewer

Length: 300 bp
atgttggaaattgaatctgactctgttgttcttgtccagttagtgcagcagcaaaatcttcctactcatcctcttggatctctgctcgcgggatgcagcaactttatggccactatgcagaatgtccatctcatgcacatcttttgtgaatttaatatgaccgcggatgctttggctagatgcagcattgatcatgagcctagcctcatcacatttatggatcctcctgtccatgctactgaagccttccttgatgatcttgctactgtaactagaactaggagaactgtctcttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

99

Amino Acids

10.97

Weight (kDa)

4.84

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 89, 164
AciI CCGC 3 cut(s) 89, 162, 164
AclWI GGATC 3 cut(s) 85, 215, 228
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 261
AgsI TTSAA 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 3 cut(s) 85, 215, 228
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 4 cut(s) 46, 49, 96, 183
ApoI RAATTY 1 cut(s) 149
BalI TGGCCA 1 cut(s) 110
BamHI GGATCC 1 cut(s) 220
BbvI GCAGC 4 cut(s) 58, 61, 108, 195
BccI CCATC 1 cut(s) 135
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 4 cut(s) 177, 201, 273, 279
BisI GCNGC 4 cut(s) 47, 50, 97, 184
BlsI GCNGC 4 cut(s) 48, 51, 98, 185
BmiI GGNNCC 1 cut(s) 222
BmsI GCATC 3 cut(s) 83, 157, 170
BsaJI CCNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 67, 98, 172
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 4 cut(s) 58, 61, 108, 195
BsgI GTGCAG 1 cut(s) 65
Bsh1236I CGCG 2 cut(s) 89, 164
BshFI GGCC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 295
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 4 cut(s) 77, 190, 220, 256
BspACI CCGC 3 cut(s) 89, 162, 164
BspANI GGCC 1 cut(s) 110
BspFNI CGCG 2 cut(s) 89, 164
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 3 cut(s) 85, 215, 228
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 4 cut(s) 77, 190, 220, 256
Bst4CI ACNGT 2 cut(s) 268, 289
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 3 cut(s) 67, 98, 172
BstFNI CGCG 2 cut(s) 89, 164
BstKTI GATC 4 cut(s) 80, 193, 223, 259
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 4 cut(s) 77, 190, 220, 256
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstUI CGCG 2 cut(s) 89, 164
BstV1I GCAGC 4 cut(s) 58, 61, 108, 195
BstX2I RGATCY 2 cut(s) 77, 220
BstYI RGATCY 2 cut(s) 77, 220
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 3 cut(s) 67, 98, 172
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 1 cut(s) 193
Cfr42I CCGCGG 1 cut(s) 165
CviAII CATG 3 cut(s) 133, 194, 233
CviJI RGCY 5 cut(s) 110, 176, 199, 204, 245
CviKI_1 RGCY 5 cut(s) 110, 176, 199, 204, 245
DdeI CTNAG 1 cut(s) 297
DpnI GATC 4 cut(s) 79, 192, 222, 258
DpnII GATC 4 cut(s) 77, 190, 220, 256
EaeI YGGCCR 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 261
FaeI CATG 3 cut(s) 136, 197, 236
FaiI YATR 7 cut(s) 107, 116, 134, 158, 195, 218, 234
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 3 cut(s) 132, 193, 232
FauI CCCGC 1 cut(s) 82
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 47, 50, 97, 184
FokI GGATG 3 cut(s) 54, 105, 179
Fsp4HI GCNGC 4 cut(s) 47, 50, 97, 184
FspBI CTAG 4 cut(s) 177, 201, 273, 279
GluI GCNGC 4 cut(s) 47, 50, 97, 184
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 3 cut(s) 136, 197, 236
HinfI GANTC 2 cut(s) 14, 20
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 268, 289
HpyCH4V TGCA 5 cut(s) 46, 96, 118, 136, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 3 cut(s) 136, 197, 236
Ksp22I TGATCA 1 cut(s) 190
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 4 cut(s) 77, 190, 220, 256
LpnPI CCDG 2 cut(s) 50, 240
Lsp1109I GCAGC 4 cut(s) 58, 61, 108, 195
LweI GCATC 3 cut(s) 83, 157, 170
MaeI CTAG 4 cut(s) 177, 201, 273, 279
MaeIII GTNAC 1 cut(s) 268
MalI GATC 4 cut(s) 79, 192, 222, 258
MboI GATC 4 cut(s) 77, 190, 220, 256
MboII GAAGA 2 cut(s) 50, 285
MflI RGATCY 2 cut(s) 77, 220
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 2 cut(s) 9, 149
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 81, 215, 234
Mox20I TGGCCA 1 cut(s) 110
MscI TGGCCA 1 cut(s) 110
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 164
MvnI CGCG 2 cut(s) 89, 164
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 4 cut(s) 77, 190, 220, 256
NlaIII CATG 3 cut(s) 136, 197, 236
NlaIV GGNNCC 1 cut(s) 222
PagI TCATGA 1 cut(s) 193
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 4 cut(s) 48, 51, 98, 185
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 222
PsuI RGATCY 2 cut(s) 77, 220
RseI CAYNNNNRTG 1 cut(s) 215
SacII CCGCGG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 4 cut(s) 47, 50, 97, 184
Sau3AI GATC 4 cut(s) 77, 190, 220, 256
SchI GAGTC 1 cut(s) 14
SfaNI GCATC 3 cut(s) 83, 157, 170
Sfr303I CCGCGG 1 cut(s) 165
SgrBI CCGCGG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 2 cut(s) 9, 149
SsiI CCGC 3 cut(s) 89, 162, 164
SspMI CTAG 4 cut(s) 177, 201, 273, 279
TaaI ACNGT 2 cut(s) 268, 289
TasI AATT 2 cut(s) 9, 149
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 4 cut(s) 46, 49, 96, 183
XapI RAATTY 1 cut(s) 149
XspI CTAG 4 cut(s) 177, 201, 273, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.