Rroxscaffold_1G00000480

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000254
Physical Location & Seq
Reverse (-)
908434 .. 909530
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000480.1

Sequence Viewer

Length: 204 bp
ATGTCTAATATGAACAATGCTCAGCTCACCCATGTGTTCCGGGAATGCAACATGCTTGCTAATGCATTAGCAAAGAATAGCATCTATCATGATCTGGGCATCATCACTTTTGAAAGTCCCCCTATCCATGCTGCTCAGGCATACTTAGAAGATATTGCTGCTGTGTCTAGAGCCAGAATATCTGGCATGTGCTCTCACACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

67

Amino Acids

7.36

Weight (kDa)

6.37

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 113
AleI CACNNNNGTG 1 cut(s) 32
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 131, 158
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 118, 145
BcnI CCSGG 1 cut(s) 41
BfaI CTAG 1 cut(s) 168
BisI GCNGC 2 cut(s) 132, 159
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 2 cut(s) 133, 160
Bme1390I CCNGG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 90, 108
Bpu10I CCTNAGC 1 cut(s) 135
Bpu1102I GCTNAGC 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 35, 149
BseXI GCAGC 2 cut(s) 118, 145
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 91
Bsp1720I GCTNAGC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 34, 148
BspHI TCATGA 1 cut(s) 88
BssMI GATC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 4 cut(s) 21, 135, 145, 201
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNSI RCATGY 2 cut(s) 55, 190
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 118, 145
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 88
CviAII CATG 5 cut(s) 32, 52, 89, 128, 187
CviJI RGCY 2 cut(s) 25, 173
CviKI_1 RGCY 2 cut(s) 25, 173
DdeI CTNAG 4 cut(s) 21, 135, 145, 201
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 67
FaeI CATG 5 cut(s) 35, 55, 92, 131, 190
FaiI YATR 7 cut(s) 11, 33, 53, 90, 129, 142, 188
FaqI GGGAC 1 cut(s) 102
FatI CATG 5 cut(s) 31, 51, 88, 127, 186
Fnu4HI GCNGC 2 cut(s) 132, 159
Fsp4HI GCNGC 2 cut(s) 132, 159
FspBI CTAG 1 cut(s) 168
GluI GCNGC 2 cut(s) 132, 159
HapII CCGG 1 cut(s) 40
Hin1II CATG 5 cut(s) 35, 55, 92, 131, 190
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 89, 168
HpyCH4V TGCA 2 cut(s) 48, 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 4 cut(s) 21, 135, 145, 201
Hsp92II CATG 5 cut(s) 35, 55, 92, 131, 190
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 53, 80, 122, 168, 187
Lsp1109I GCAGC 2 cut(s) 118, 145
LweI GCATC 2 cut(s) 90, 108
MaeI CTAG 1 cut(s) 168
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 194
Mph1103I ATGCAT 1 cut(s) 67
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 41
NdeII GATC 1 cut(s) 91
NlaIII CATG 5 cut(s) 35, 55, 92, 131, 190
NsiI ATGCAT 1 cut(s) 67
NspI RCATGY 2 cut(s) 55, 190
OliI CACNNNNGTG 1 cut(s) 32
PagI TCATGA 1 cut(s) 88
PctI GAATGC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 2 cut(s) 133, 160
RseI CAYNNNNRTG 1 cut(s) 32
SatI GCNGC 2 cut(s) 132, 159
Sau3AI GATC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 194
SetI ASST 1 cut(s) 27
SfaNI GCATC 2 cut(s) 90, 108
SmiMI CAYNNNNRTG 1 cut(s) 32
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 39
TseI GCWGC 2 cut(s) 131, 158
TspDTI ATGAA 1 cut(s) 26
XbaI TCTAGA 1 cut(s) 167
XceI RCATGY 2 cut(s) 55, 190
XspI CTAG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.