RchiOBHm_Chr4g0437331

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000254
Physical Location & Seq
Reverse (-)
60465479 .. 60466494
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40559

Sequence Viewer

Length: 630 bp
ATGACTGGATTGCTGCTAATCTTCTCCAGAAAGGATGTAAATGGCTTTCCTTCGACTGGAATGAATTCTTCATCGTTGTTTGCTGGTAGGTTTGGAAATGGAGGAACAAAGGCATCTTTGAGGCTCATTTCACTTTTCCTCATAATCCTAAACAAATGGAATGTTATTCTTCAGTATGCCACTGAGATTTCTATTGCTTCCAAGCCTAGTATTGATAATAGGCTTCAATGGATGAAACCTGCTGCAAACAATTTCAAATTGAACATGGATGGTTCCAGATCTTATGCAGGAGTGATTGGAGCTGGTGGTCTCATTAGGAACAGTTCTGGTGTTTGGATTAAAGGGTTCACTCACAGTATGGGAGTTGGTGAGATTGTCGAAGCTGAAGCTTGGGGCCTTTACATTGGCTTAAAGCTTGCCCTTGATCTCCACATTAAAAGATTGGAAGTTGAAAGTGATTTGGCCATTGTGGTAAATCTCATAAATTCTGGAAATATTGATAGTCACCCTCTTGGAACTCTTATTGCCAATTGCAGAGATATGATACAAGAGTTTGATTTCTGTTCTATCCACCACATCCATAGAGAACAGAACTTTGCCGTGGATATTTTGGCAAATGATGGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.85

Weight (kDa)

7.01

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 89 - 207 2.3e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 2 cut(s) 64, 484
AcuI CTGAAG 2 cut(s) 155, 405
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 4 cut(s) 227, 256, 262, 452
AluBI AGCT 4 cut(s) 302, 383, 389, 415
AluI AGCT 4 cut(s) 302, 383, 389, 415
Alw26I GTCTC 1 cut(s) 314
AoxI GGCC 2 cut(s) 394, 462
ApeKI GCWGC 2 cut(s) 13, 242
ApoI RAATTY 2 cut(s) 64, 484
Asp700I GAANNNNTTC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 380, 497
BaeI ACNNNNGTAYC 2 cut(s) 536, 569
BalI TGGCCA 1 cut(s) 464
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 263, 614
BceAI ACGGC 1 cut(s) 584
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 247
BglII AGATCT 1 cut(s) 278
BisI GCNGC 2 cut(s) 14, 243
BlsI GCNGC 2 cut(s) 15, 244
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 274, 395
BmsI GCATC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 600
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 10, 61
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 4 cut(s) 40, 237, 274, 576
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 10, 61
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 2 cut(s) 396, 464
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 2 cut(s) 396, 464
Bso31I GGTCTC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 278, 424
BspANI GGCC 2 cut(s) 396, 464
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 274, 395
BspMI ACCTGC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 314
BsrI ACTGG 2 cut(s) 10, 61
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 2 cut(s) 278, 424
Bst4CI ACNGT 2 cut(s) 323, 356
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 600
BstF5I GGATG 4 cut(s) 40, 237, 274, 576
BstKTI GATC 2 cut(s) 281, 427
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 278, 424
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 2 cut(s) 396, 464
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 4 cut(s) 40, 237, 274, 576
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 394
CviAII CATG 1 cut(s) 265
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 280, 426
DpnII GATC 2 cut(s) 278, 424
EaeI YGGCCR 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 314
Eco57I CTGAAG 2 cut(s) 155, 405
EcoO109I RGGNCCY 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 64
FaeI CATG 1 cut(s) 268
FaiI YATR 8 cut(s) 143, 177, 266, 285, 359, 482, 542, 582
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 14, 243
FokI GGATG 4 cut(s) 47, 244, 281, 563
Fsp4HI GCNGC 2 cut(s) 14, 243
FspBI CTAG 1 cut(s) 207
GluI GCNGC 2 cut(s) 14, 243
GsuI CTGGAG 1 cut(s) 10
HaeIII GGCC 2 cut(s) 396, 464
Hin1II CATG 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 387, 413
HphI GGTGA 2 cut(s) 380, 497
Hpy166II GTNNAC 1 cut(s) 348
Hpy188III TCNNGA 3 cut(s) 27, 276, 489
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 2 cut(s) 323, 356
HpyCH4V TGCA 3 cut(s) 245, 287, 534
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 268
Kzo9I GATC 2 cut(s) 278, 424
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 9 cut(s) 40, 42, 69, 252, 273, 288, 289, 312, 474
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 503
MalI GATC 2 cut(s) 280, 426
MboI GATC 2 cut(s) 278, 424
MboII GAAGA 3 cut(s) 13, 60, 161
MfeI CAATTG 1 cut(s) 529
MflI RGATCY 1 cut(s) 278
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 5 cut(s) 64, 250, 257, 484, 529
MluNI TGGCCA 1 cut(s) 464
MnlI CCTC 4 cut(s) 95, 114, 149, 519
Mox20I TGGCCA 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 64
MscI TGGCCA 1 cut(s) 464
MseI TTAA 4 cut(s) 339, 410, 435, 628
Msp20I TGGCCA 1 cut(s) 464
MunI CAATTG 1 cut(s) 529
NdeII GATC 2 cut(s) 278, 424
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 274, 395
NmuCI GTSAC 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 15, 244
PspN4I GGNNCC 2 cut(s) 274, 395
PspPI GGNCC 1 cut(s) 394
PsuI RGATCY 1 cut(s) 278
SaqAI TTAA 4 cut(s) 339, 410, 435, 628
SatI GCNGC 2 cut(s) 14, 243
Sau3AI GATC 2 cut(s) 278, 424
Sau96I GGNCC 1 cut(s) 394
SetI ASST 6 cut(s) 92, 241, 304, 385, 391, 417
SfaNI GCATC 1 cut(s) 122
Sse9I AATT 5 cut(s) 64, 250, 257, 484, 529
SspI AATATT 1 cut(s) 496
SspMI CTAG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 323, 356
TaqI TCGA 2 cut(s) 53, 378
TasI AATT 5 cut(s) 64, 250, 257, 484, 529
Tru1I TTAA 4 cut(s) 339, 410, 435, 628
Tru9I TTAA 4 cut(s) 339, 410, 435, 628
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 2 cut(s) 13, 242
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 3 cut(s) 60, 77, 248
TspRI CASTG 1 cut(s) 187
XapI RAATTY 2 cut(s) 64, 484
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.