Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_8 | PF13855 | 2 - 54 | 8.7e-07 | Leucine rich repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 4 cut(s) | 22, 94, 236, 361 |
| AcsI | RAATTY | 1 cut(s) | 86 |
| AfaI | GTAC | 1 cut(s) | 208 |
| AgsI | TTSAA | 2 cut(s) | 62, 291 |
| AjnI | CCWGG | 1 cut(s) | 225 |
| AluBI | AGCT | 1 cut(s) | 272 |
| AluI | AGCT | 1 cut(s) | 272 |
| Alw26I | GTCTC | 1 cut(s) | 151 |
| AlwI | GGATC | 4 cut(s) | 22, 94, 236, 361 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 356 |
| ApoI | RAATTY | 1 cut(s) | 86 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 86 |
| AspS9I | GGNCC | 2 cut(s) | 70, 167 |
| AvaII | GGWCC | 2 cut(s) | 70, 167 |
| BauI | CACGAG | 1 cut(s) | 177 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 391 |
| BciT130I | CCWGG | 1 cut(s) | 227 |
| BcoDI | GTCTC | 1 cut(s) | 151 |
| BglII | AGATCT | 1 cut(s) | 404 |
| BmcAI | AGTACT | 1 cut(s) | 208 |
| Bme1390I | CCNGG | 1 cut(s) | 227 |
| Bme18I | GGWCC | 2 cut(s) | 70, 167 |
| BmgT120I | GGNCC | 2 cut(s) | 70, 167 |
| BmiI | GGNNCC | 1 cut(s) | 184 |
| BmrFI | CCNGG | 1 cut(s) | 227 |
| BmrI | ACTGGG | 1 cut(s) | 181 |
| BmsI | GCATC | 1 cut(s) | 45 |
| BmuI | ACTGGG | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 226 |
| Bse1I | ACTGG | 2 cut(s) | 25, 187 |
| Bse3DI | GCAATG | 2 cut(s) | 245, 271 |
| BseBI | CCWGG | 1 cut(s) | 227 |
| BseDI | CCNNGG | 2 cut(s) | 39, 226 |
| BseGI | GGATG | 1 cut(s) | 35 |
| BseMI | GCAATG | 2 cut(s) | 245, 271 |
| BseMII | CTCAG | 2 cut(s) | 105, 175 |
| BseNI | ACTGG | 2 cut(s) | 25, 187 |
| BseRI | GAGGAG | 1 cut(s) | 264 |
| BsmAI | GTCTC | 1 cut(s) | 151 |
| Bsp143I | GATC | 5 cut(s) | 27, 99, 241, 353, 404 |
| BspCNI | CTCAG | 2 cut(s) | 104, 174 |
| BspLI | GGNNCC | 1 cut(s) | 184 |
| BspPI | GGATC | 4 cut(s) | 22, 94, 236, 361 |
| BsrDI | GCAATG | 2 cut(s) | 245, 271 |
| BsrI | ACTGG | 2 cut(s) | 25, 187 |
| BssECI | CCNNGG | 2 cut(s) | 39, 226 |
| BssMI | GATC | 5 cut(s) | 27, 99, 241, 353, 404 |
| BssSI | CACGAG | 1 cut(s) | 177 |
| BssT1I | CCWWGG | 1 cut(s) | 39 |
| Bst2BI | CACGAG | 1 cut(s) | 177 |
| Bst2UI | CCWGG | 1 cut(s) | 227 |
| BstDEI | CTNAG | 2 cut(s) | 91, 161 |
| BstF5I | GGATG | 1 cut(s) | 35 |
| BstKTI | GATC | 5 cut(s) | 30, 102, 244, 356, 407 |
| BstMAI | GTCTC | 1 cut(s) | 151 |
| BstMBI | GATC | 5 cut(s) | 27, 99, 241, 353, 404 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 383 |
| BstNI | CCWGG | 1 cut(s) | 227 |
| BstSCI | CCNGG | 1 cut(s) | 225 |
| BstX2I | RGATCY | 4 cut(s) | 99, 241, 353, 404 |
| BstYI | RGATCY | 4 cut(s) | 99, 241, 353, 404 |
| BtsCI | GGATG | 1 cut(s) | 35 |
| BtsIMutI | CAGTG | 2 cut(s) | 18, 169 |
| CaiI | CAGNNNCTG | 1 cut(s) | 356 |
| Cfr13I | GGNCC | 2 cut(s) | 70, 167 |
| Csp6I | GTAC | 1 cut(s) | 207 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 145, 180 |
| CviJI | RGCY | 1 cut(s) | 272 |
| CviKI_1 | RGCY | 1 cut(s) | 272 |
| CviQI | GTAC | 1 cut(s) | 207 |
| DdeI | CTNAG | 2 cut(s) | 91, 161 |
| DpnI | GATC | 5 cut(s) | 29, 101, 243, 355, 406 |
| DpnII | GATC | 5 cut(s) | 27, 99, 241, 353, 404 |
| Eco130I | CCWWGG | 1 cut(s) | 39 |
| Eco47I | GGWCC | 2 cut(s) | 70, 167 |
| EcoRII | CCWGG | 1 cut(s) | 225 |
| EcoT14I | CCWWGG | 1 cut(s) | 39 |
| ErhI | CCWWGG | 1 cut(s) | 39 |
| FaiI | YATR | 4 cut(s) | 153, 214, 216, 375 |
| FauNDI | CATATG | 1 cut(s) | 214 |
| FokI | GGATG | 1 cut(s) | 22 |
| HinfI | GANTC | 1 cut(s) | 62 |
| Hpy188I | TCNGA | 3 cut(s) | 313, 392, 416 |
| HpyAV | CCTTC | 2 cut(s) | 212, 297 |
| HpyCH4V | TGCA | 1 cut(s) | 134 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 383 |
| HpyF3I | CTNAG | 2 cut(s) | 91, 161 |
| Kzo9I | GATC | 5 cut(s) | 27, 99, 241, 353, 404 |
| LmnI | GCTCC | 1 cut(s) | 277 |
| LpnPI | CCDG | 7 cut(s) | 6, 78, 200, 212, 239, 332, 336 |
| LweI | GCATC | 1 cut(s) | 45 |
| MaeIII | GTNAC | 1 cut(s) | 366 |
| MalI | GATC | 5 cut(s) | 29, 101, 243, 355, 406 |
| MboI | GATC | 5 cut(s) | 27, 99, 241, 353, 404 |
| MboII | GAAGA | 3 cut(s) | 109, 308, 311 |
| MfeI | CAATTG | 1 cut(s) | 278 |
| MflI | RGATCY | 4 cut(s) | 99, 241, 353, 404 |
| MluCI | AATT | 4 cut(s) | 47, 86, 278, 326 |
| MmeI | TCCRAC | 2 cut(s) | 30, 48 |
| MnlI | CCTC | 4 cut(s) | 43, 114, 186, 285 |
| MroXI | GAANNNNTTC | 1 cut(s) | 86 |
| MseI | TTAA | 1 cut(s) | 50 |
| MspR9I | CCNGG | 1 cut(s) | 227 |
| MunI | CAATTG | 1 cut(s) | 278 |
| MvaI | CCWGG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 383 |
| NdeI | CATATG | 1 cut(s) | 214 |
| NdeII | GATC | 5 cut(s) | 27, 99, 241, 353, 404 |
| NlaIV | GGNNCC | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 86 |
| PfeI | GAWTC | 1 cut(s) | 62 |
| Psp6I | CCWGG | 1 cut(s) | 225 |
| PspGI | CCWGG | 1 cut(s) | 225 |
| PspN4I | GGNNCC | 1 cut(s) | 184 |
| PspPI | GGNCC | 2 cut(s) | 70, 167 |
| PstNI | CAGNNNCTG | 1 cut(s) | 356 |
| PsuI | RGATCY | 4 cut(s) | 99, 241, 353, 404 |
| RsaI | GTAC | 1 cut(s) | 208 |
| RsaNI | GTAC | 1 cut(s) | 207 |
| SaqAI | TTAA | 1 cut(s) | 50 |
| Sau3AI | GATC | 5 cut(s) | 27, 99, 241, 353, 404 |
| Sau96I | GGNCC | 2 cut(s) | 70, 167 |
| ScaI | AGTACT | 1 cut(s) | 208 |
| ScrFI | CCNGG | 1 cut(s) | 227 |
| SetI | ASST | 4 cut(s) | 75, 228, 274, 289 |
| SfaNI | GCATC | 1 cut(s) | 45 |
| SinI | GGWCC | 2 cut(s) | 70, 167 |
| Sse9I | AATT | 4 cut(s) | 47, 86, 278, 326 |
| StyD4I | CCNGG | 1 cut(s) | 225 |
| StyI | CCWWGG | 1 cut(s) | 39 |
| TaqI | TCGA | 2 cut(s) | 106, 141 |
| TasI | AATT | 4 cut(s) | 47, 86, 278, 326 |
| TatI | WGTACW | 1 cut(s) | 206 |
| TfiI | GAWTC | 1 cut(s) | 62 |
| Tru1I | TTAA | 1 cut(s) | 50 |
| Tru9I | TTAA | 1 cut(s) | 50 |
| TscAI | CASTG | 2 cut(s) | 25, 169 |
| TspDTI | ATGAA | 3 cut(s) | 201, 231, 282 |
| TspRI | CASTG | 2 cut(s) | 25, 169 |
| VpaK11BI | GGWCC | 2 cut(s) | 70, 167 |
| XapI | RAATTY | 1 cut(s) | 86 |
| XmnI | GAANNNNTTC | 1 cut(s) | 86 |
| ZrmI | AGTACT | 1 cut(s) | 208 |