Rmu_sc0003825.1_g000031

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003825.1
OG0000254
Physical Location & Seq
Forward (+)
159942 .. 160232
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003825.1_g000031.1.cds

Sequence Viewer

Length: 291 bp
atgtcaagtttcagaatgatggcaaagtttaagaatgtcaattctctgcatccccttggttctatgcttgctggttgtgatctaatgatggcaaagtttcagaatgtcaagttgacacacatatttagagaatgtaacatgactgctgacgcccttgccaagaatagcatttttcatgaacctggattggtcacttttgacaatccccctgctcatgctgcccaaacattcttggatgatttgtctgatgtaactagagctaggaggactggtttttgttccagttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

96

Amino Acids

10.64

Weight (kDa)

8.59

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 150
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 205
BccI CCATC 2 cut(s) 13, 82
BciT130I CCWGG 1 cut(s) 183
BfaI CTAG 2 cut(s) 255, 261
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bse1I ACTGG 2 cut(s) 274, 282
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 2 cut(s) 49, 241
BseNI ACTGG 2 cut(s) 274, 282
BseXI GCAGC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 79
BspHI TCATGA 1 cut(s) 175
BsrI ACTGG 2 cut(s) 274, 282
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 79
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 2 cut(s) 49, 241
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 49, 241
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 175
CseI GACGC 1 cut(s) 158
CviAII CATG 3 cut(s) 139, 176, 215
CviJI RGCY 1 cut(s) 260
CviKI_1 RGCY 1 cut(s) 260
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 3 cut(s) 142, 179, 218
FaiI YATR 5 cut(s) 65, 122, 140, 177, 216
FatI CATG 3 cut(s) 138, 175, 214
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 36, 248
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 255, 261
GluI GCNGC 1 cut(s) 219
HgaI GACGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 3 cut(s) 142, 179, 218
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 3 cut(s) 14, 102, 247
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 3 cut(s) 142, 179, 218
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 5 cut(s) 57, 168, 195, 222, 255
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 255, 261
MaeIII GTNAC 3 cut(s) 134, 190, 250
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MluCI AATT 1 cut(s) 40
MnlI CCTC 1 cut(s) 258
MseI TTAA 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 1 cut(s) 79
NlaIII CATG 3 cut(s) 142, 179, 218
NmuCI GTSAC 1 cut(s) 190
PagI TCATGA 1 cut(s) 175
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 183
SetI ASST 2 cut(s) 184, 262
SfaNI GCATC 1 cut(s) 58
Sse9I AATT 1 cut(s) 40
SspMI CTAG 2 cut(s) 255, 261
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 55
TasI AATT 1 cut(s) 40
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 164, 192
XspI CTAG 2 cut(s) 255, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.