Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 10 - 116 | 5.3e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 304 |
| AgsI | TTSAA | 7 cut(s) | 22, 28, 119, 155, 199, 221, 245 |
| AjnI | CCWGG | 2 cut(s) | 158, 279 |
| AluBI | AGCT | 1 cut(s) | 334 |
| AluI | AGCT | 1 cut(s) | 334 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| ApoI | RAATTY | 1 cut(s) | 304 |
| AseI | ATTAAT | 1 cut(s) | 123 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 17 |
| AsuHPI | GGTGA | 1 cut(s) | 149 |
| BanII | GRGCYC | 1 cut(s) | 287 |
| BccI | CCATC | 2 cut(s) | 29, 313 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 342 |
| BciT130I | CCWGG | 2 cut(s) | 160, 281 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 1 cut(s) | 42 |
| BlpI | GCTNAGC | 1 cut(s) | 330 |
| Bme1390I | CCNGG | 2 cut(s) | 160, 281 |
| BmiI | GGNNCC | 1 cut(s) | 286 |
| BmrFI | CCNGG | 2 cut(s) | 160, 281 |
| BmsI | GCATC | 3 cut(s) | 240, 287, 316 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 330 |
| BpuEI | CTTGAG | 1 cut(s) | 29 |
| BsaBI | GATNNNNATC | 1 cut(s) | 273 |
| BsaJI | CCNNGG | 4 cut(s) | 158, 159, 279, 280 |
| Bse1I | ACTGG | 1 cut(s) | 107 |
| Bse3DI | GCAATG | 1 cut(s) | 365 |
| Bse8I | GATNNNNATC | 1 cut(s) | 273 |
| BseBI | CCWGG | 2 cut(s) | 160, 281 |
| BseDI | CCNNGG | 4 cut(s) | 158, 159, 279, 280 |
| BseGI | GGATG | 4 cut(s) | 154, 274, 302, 328 |
| BseJI | GATNNNNATC | 1 cut(s) | 273 |
| BseMI | GCAATG | 1 cut(s) | 365 |
| BseMII | CTCAG | 1 cut(s) | 344 |
| BseNI | ACTGG | 1 cut(s) | 107 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| Bsp1286I | GDGCHC | 1 cut(s) | 287 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 330 |
| BspCNI | CTCAG | 1 cut(s) | 343 |
| BspLI | GGNNCC | 1 cut(s) | 286 |
| BsrDI | GCAATG | 1 cut(s) | 365 |
| BsrI | ACTGG | 1 cut(s) | 107 |
| BssECI | CCNNGG | 4 cut(s) | 158, 159, 279, 280 |
| Bst2UI | CCWGG | 2 cut(s) | 160, 281 |
| BstDEI | CTNAG | 2 cut(s) | 211, 330 |
| BstF5I | GGATG | 4 cut(s) | 154, 274, 302, 328 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstNI | CCWGG | 2 cut(s) | 160, 281 |
| BstSCI | CCNGG | 2 cut(s) | 158, 279 |
| BtsCI | GGATG | 4 cut(s) | 154, 274, 302, 328 |
| CviAII | CATG | 2 cut(s) | 173, 293 |
| CviJI | RGCY | 2 cut(s) | 285, 334 |
| CviKI_1 | RGCY | 2 cut(s) | 285, 334 |
| DdeI | CTNAG | 2 cut(s) | 211, 330 |
| Eco24I | GRGCYC | 1 cut(s) | 287 |
| EcoRII | CCWGG | 2 cut(s) | 158, 279 |
| EcoT38I | GRGCYC | 1 cut(s) | 287 |
| FaeI | CATG | 2 cut(s) | 176, 296 |
| FaiI | YATR | 4 cut(s) | 129, 174, 231, 294 |
| FatI | CATG | 2 cut(s) | 172, 292 |
| FokI | GGATG | 4 cut(s) | 161, 261, 309, 335 |
| FriOI | GRGCYC | 1 cut(s) | 287 |
| FspBI | CTAG | 1 cut(s) | 42 |
| Hin1II | CATG | 2 cut(s) | 176, 296 |
| HinfI | GANTC | 1 cut(s) | 221 |
| HphI | GGTGA | 1 cut(s) | 149 |
| Hpy188I | TCNGA | 2 cut(s) | 206, 226 |
| Hpy188III | TCNNGA | 1 cut(s) | 8 |
| HpyAV | CCTTC | 2 cut(s) | 63, 299 |
| HpyCH4V | TGCA | 2 cut(s) | 300, 358 |
| HpyF3I | CTNAG | 2 cut(s) | 211, 330 |
| Hsp92II | CATG | 2 cut(s) | 176, 296 |
| LmnI | GCTCC | 1 cut(s) | 290 |
| LpnPI | CCDG | 7 cut(s) | 42, 57, 88, 145, 172, 266, 293 |
| LweI | GCATC | 3 cut(s) | 240, 287, 316 |
| MaeI | CTAG | 1 cut(s) | 42 |
| MhlI | GDGCHC | 1 cut(s) | 287 |
| MluCI | AATT | 4 cut(s) | 120, 124, 256, 304 |
| MnlI | CCTC | 1 cut(s) | 15 |
| MroXI | GAANNNNTTC | 1 cut(s) | 17 |
| MseI | TTAA | 1 cut(s) | 123 |
| MspR9I | CCNGG | 2 cut(s) | 160, 281 |
| MvaI | CCWGG | 2 cut(s) | 160, 281 |
| NlaIII | CATG | 2 cut(s) | 176, 296 |
| NlaIV | GGNNCC | 1 cut(s) | 286 |
| PasI | CCCWGGG | 2 cut(s) | 159, 280 |
| PdmI | GAANNNNTTC | 1 cut(s) | 17 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PshBI | ATTAAT | 1 cut(s) | 123 |
| Psp6I | CCWGG | 2 cut(s) | 158, 279 |
| PspGI | CCWGG | 2 cut(s) | 158, 279 |
| PspN4I | GGNNCC | 1 cut(s) | 286 |
| SaqAI | TTAA | 1 cut(s) | 123 |
| ScrFI | CCNGG | 2 cut(s) | 160, 281 |
| SduI | GDGCHC | 1 cut(s) | 287 |
| SetI | ASST | 2 cut(s) | 70, 336 |
| SfaNI | GCATC | 3 cut(s) | 240, 287, 316 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| Sse9I | AATT | 4 cut(s) | 120, 124, 256, 304 |
| SspMI | CTAG | 1 cut(s) | 42 |
| StyD4I | CCNGG | 2 cut(s) | 158, 279 |
| TasI | AATT | 4 cut(s) | 120, 124, 256, 304 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| Tru1I | TTAA | 1 cut(s) | 123 |
| Tru9I | TTAA | 1 cut(s) | 123 |
| TspDTI | ATGAA | 4 cut(s) | 161, 263, 281, 326 |
| VspI | ATTAAT | 1 cut(s) | 123 |
| XapI | RAATTY | 1 cut(s) | 304 |
| XmnI | GAANNNNTTC | 1 cut(s) | 17 |
| XspI | CTAG | 1 cut(s) | 42 |