FvH4_4g11162

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000254
Physical Location & Seq
Reverse (-)
14969921 .. 14970223
303 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11162.t1

Sequence Viewer

Length: 303 bp
ATGAACCTGGAAATAGAGTATGACTCTGCTGTTCTTGTTCAGCTTATGCAGAAGGTTGATAACAGCGTTCATACCCTTGGTTCCCTTCTAAATGGCTGTGCTGTGATGATGGCTAATCTGATGATGATGGCTAATCTGCAAGATGTGAAGCTGAAACATATTTTCCGGGAATGCAACATAGTTGCTGATGTCTTGGCAAATAATAACATTAACCATGATCTTGGTCTTATTTCTCTCTCTGATGGTCATGTTCATGCTGCCCAGGCTGTTCTTGACGATCTTGCGGGTGTCACCAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

101

Amino Acids

10.86

Weight (kDa)

5.0

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 67 6.8e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 284
AjnI CCWGG 2 cut(s) 6, 261
AluBI AGCT 3 cut(s) 43, 151, 299
AluI AGCT 3 cut(s) 43, 151, 299
ApeKI GCWGC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 283
BbvI GCAGC 1 cut(s) 244
BccI CCATC 3 cut(s) 103, 121, 236
BciT130I CCWGG 2 cut(s) 8, 263
BcnI CCSGG 1 cut(s) 167
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 3 cut(s) 8, 167, 263
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 3 cut(s) 8, 167, 263
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 76, 261
BseBI CCWGG 2 cut(s) 8, 263
BseDI CCNNGG 2 cut(s) 76, 261
BseXI GCAGC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 166
BsmI GAATGC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 217, 277
BspACI CCGC 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 76, 261
BssMI GATC 2 cut(s) 217, 277
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 8, 263
BstKTI GATC 2 cut(s) 220, 280
BstMBI GATC 2 cut(s) 217, 277
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 2 cut(s) 8, 263
BstSCI CCNGG 3 cut(s) 6, 165, 261
BstV1I GCAGC 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 221
CviAII CATG 3 cut(s) 215, 248, 254
CviJI RGCY 7 cut(s) 43, 96, 113, 131, 151, 266, 299
CviKI_1 RGCY 7 cut(s) 43, 96, 113, 131, 151, 266, 299
DpnI GATC 2 cut(s) 219, 279
DpnII GATC 2 cut(s) 217, 277
Eco130I CCWWGG 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 6, 261
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 3 cut(s) 218, 251, 257
FaiI YATR 8 cut(s) 21, 47, 72, 159, 179, 216, 249, 255
FatI CATG 3 cut(s) 214, 247, 253
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 258
HapII CCGG 1 cut(s) 166
Hin1II CATG 3 cut(s) 218, 251, 257
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 120, 241
Hpy188III TCNNGA 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 46, 95
HpyCH4V TGCA 3 cut(s) 49, 139, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
Hsp92II CATG 3 cut(s) 218, 251, 257
Kzo9I GATC 2 cut(s) 217, 277
LpnPI CCDG 4 cut(s) 20, 179, 248, 275
Lsp1109I GCAGC 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 219, 279
MboI GATC 2 cut(s) 217, 277
MlyI GAGTC 1 cut(s) 17
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 3 cut(s) 8, 167, 263
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 2 cut(s) 8, 263
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 167
NdeII GATC 2 cut(s) 217, 277
NlaIII CATG 3 cut(s) 218, 251, 257
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 289
PctI GAATGC 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 6, 261
PspGI CCWGG 2 cut(s) 6, 261
PspN4I GGNNCC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 217, 277
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 3 cut(s) 8, 167, 263
SetI ASST 5 cut(s) 9, 45, 57, 153, 301
SmiMI CAYNNNNRTG 1 cut(s) 252
SsiI CCGC 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 6, 165, 261
StyI CCWWGG 1 cut(s) 76
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 3 cut(s) 17, 59, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.