RchiOBHm_Chr5g0051041

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000254
Physical Location & Seq
Forward (+)
51995253 .. 51996033
781 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32856

Sequence Viewer

Length: 369 bp
ATGTTTATCATGCCTACTTGTCCTGATATAGTGATCTGGAACTATGACGCAGAATGGACTAATGCCAATGTCAAATTGAATGTTGATACTGTCTACAGGTACATCCCTCTTGCTTGGAAGAAGCCTATGGATAATTTTTACAAACTAAACATTAATGGGACTAGATCCTCTTTAACTTGCAAAATTGGTGCTGGGGGTGTCATCAGGGACGTAACTAGATCACTGGTTTCCAAGTCAATTTGGGAACTGGAGAAATTCTTGATGCTGAAGCTTGGGGTTTATTCTACGGTCTTAAACTTGCTCTTATGCAGAAAGCTGAATTCTCCCTTCATCCCCTTGGTTCTCTTCTCAAGGGCTGCTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

122

Amino Acids

13.99

Weight (kDa)

9.55

Isoelectric Point (pI)

19.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 93
AclWI GGATC 1 cut(s) 159
AcsI RAATTY 2 cut(s) 254, 319
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 2 cut(s) 271, 316
AluI AGCT 2 cut(s) 271, 316
AlwI GGATC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 2 cut(s) 254, 319
AseI ATTAAT 1 cut(s) 153
BbvI GCAGC 1 cut(s) 343
BfaI CTAG 2 cut(s) 162, 216
BfmI CTRYAG 1 cut(s) 94
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
BmsI GCATC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 336
Bse1I ACTGG 2 cut(s) 228, 252
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 102, 330
BseNI ACTGG 2 cut(s) 228, 252
BseXI GCAGC 1 cut(s) 343
BseYI CCCAGC 1 cut(s) 191
BslFI GGGAC 2 cut(s) 172, 221
BsmFI GGGAC 2 cut(s) 172, 221
Bsp143I GATC 3 cut(s) 33, 164, 218
BspPI GGATC 1 cut(s) 159
BsrI ACTGG 2 cut(s) 228, 252
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 3 cut(s) 33, 164, 218
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 91, 289
Bst6I CTCTTC 1 cut(s) 350
BstF5I GGATG 2 cut(s) 102, 330
BstKTI GATC 3 cut(s) 36, 167, 221
BstMBI GATC 3 cut(s) 33, 164, 218
BstSFI CTRYAG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BtsCI GGATG 2 cut(s) 102, 330
BtsIMutI CAGTG 1 cut(s) 221
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 100
CviAII CATG 1 cut(s) 10
CviJI RGCY 4 cut(s) 124, 271, 316, 356
CviKI_1 RGCY 4 cut(s) 124, 271, 316, 356
CviQI GTAC 1 cut(s) 100
DpnI GATC 3 cut(s) 35, 166, 220
DpnII GATC 3 cut(s) 33, 164, 218
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 1 cut(s) 13
FaiI YATR 6 cut(s) 11, 29, 45, 128, 307, 367
FaqI GGGAC 2 cut(s) 172, 221
FatI CATG 1 cut(s) 9
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 2 cut(s) 89, 317
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 2 cut(s) 162, 216
GluI GCNGC 1 cut(s) 357
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 269
HgaI GACGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 23, 37, 259
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 2 cut(s) 91, 289
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 180, 309
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 3 cut(s) 33, 164, 218
LpnPI CCDG 7 cut(s) 22, 36, 82, 177, 190, 209, 233
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 1 cut(s) 252
MaeI CTAG 2 cut(s) 162, 216
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 35, 166, 220
MboI GATC 3 cut(s) 33, 164, 218
MboII GAAGA 2 cut(s) 130, 337
MflI RGATCY 1 cut(s) 164
MluCI AATT 6 cut(s) 74, 133, 183, 237, 254, 319
MnlI CCTC 2 cut(s) 117, 178
MseI TTAA 3 cut(s) 153, 173, 293
NdeII GATC 3 cut(s) 33, 164, 218
NlaIII CATG 1 cut(s) 13
PkrI GCNGC 1 cut(s) 358
PshBI ATTAAT 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 3 cut(s) 153, 173, 293
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 3 cut(s) 33, 164, 218
SetI ASST 4 cut(s) 101, 213, 273, 318
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 6 cut(s) 74, 133, 183, 237, 254, 319
SspMI CTAG 2 cut(s) 162, 216
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 91, 289
TaiI ACGT 1 cut(s) 213
TasI AATT 6 cut(s) 74, 133, 183, 237, 254, 319
Tru1I TTAA 3 cut(s) 153, 173, 293
Tru9I TTAA 3 cut(s) 153, 173, 293
TscAI CASTG 1 cut(s) 228
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 319
TspRI CASTG 1 cut(s) 228
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 2 cut(s) 254, 319
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 2 cut(s) 162, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.