Rmu_sc0011424.1_g000022

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011424.1
OG0000254
Physical Location & Seq
Forward (+)
84189 .. 87087
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011424.1_g000022.1.cds

Sequence Viewer

Length: 1557 bp
atggcggcgtcgaggttgatctcatgttggctgcgtaagaagatctggtggccagggttggagctccgagtggtctatcgcacgagcatggctttcgtcgccagtgtacaaggggaggccgggatggccgcggcggcgctctatgtgctcgggcagactggattgggatatgatcttggatctcgatttttgattctagctgggcaagtcccgtggcagatggcggtgtttgtggctgaggcggcccgggttcgagagacccttggtcgagttctaggcatcagtcagcttggaggtgtgcccggctgtggctgggtgtccataacaattggaaccctagggggcctcaagcttgggctattccgtttgggcaccctaaggctaactgtttgggctgcttggatgatggttttgggacctgtccctaggccaagtttggtagaccatcttggcaattggattgctggcttccaaattaaccttggtattggtgctaaccttgatgttgaagcttgggggctgtactatcgtctcaaaactgctagaaatctgctcatctccaatctggaaattgagtctgattctgccatccttattaatctcttgcaaagatctgatctatctctgcaccctcttggatctcttatggagggttgtcatcatttcgtatctaccttggacaattctagaattagccatatttttagggagtgcaacatgacagctaatgctctagccaaaaggagtattgagcatgctcctggtctcataatctttgaggatcctcctactcatgctgtgaatgctttcttggatgacatagctggtgtttctagacctagaagaactgggattattatcaatccggcgaccgtgcttccagtcctagtctctccaagagctgactgccagtactactgccaccgagactctctcaaccagcgaagcaagggcaagaagtcctttctcggaaggctagaaaaggaccttgtggcgaggttggtgctctcctcgtccacaacgcttgaagaagaagtcaggtcaagggactcccccgacgactgcaccccacgcaaaaacccttaccaaaaggtttacgctaactgctcaaagcataagacctccagttacagaccgcattcccgagcggactgtcatggtctttctgaagaacaagtgactcaaagattttctcgtcattcccaatcatccgatatgtcaactgaacggggagagaatcacccgaccgctactgacgagggagcgacctccgaagtaaggtttgcgatcatcatggagaatattgaaaatcatcgcaagaagataaccgctgattttgaaagggaaaccgcgaaaacagaacagctcatacgcgaactagaccagcgcaatacccgacatgcagaagatattaagcaacgaatcacacaatcagagaatgcagtaagggctcatgccacatgtatcgctagtgagcagaatcagtgccagaaagaaatcatggaggctatcacgaaccaaaccaagtatggcaggtcttcgcaaggatggcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

518

Amino Acids

57.73

Weight (kDa)

8.98

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1524
AccB1I GGYRCC 1 cut(s) 371
AccBSI CCGCTC 1 cut(s) 1148
AccI GTMKAC 1 cut(s) 441
AccII CGCG 3 cut(s) 131, 1352, 1374
AclWI GGATC 4 cut(s) 187, 646, 776, 789
AcoI YGGCCR 2 cut(s) 50, 126
AcuI CTGAAG 1 cut(s) 1188
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 3 cut(s) 108, 524, 914
AfiI CCNNNNNNNGG 2 cut(s) 308, 1278
AflIII ACRYGT 1 cut(s) 1460
AgsI TTSAA 4 cut(s) 509, 1028, 1307, 1340
AhdI GACNNNNNGTC 1 cut(s) 264
AjnI CCWGG 2 cut(s) 52, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 9 cut(s) 64, 200, 289, 352, 512, 725, 824, 902, 1366
AluI AGCT 9 cut(s) 64, 200, 289, 352, 512, 725, 824, 902, 1366
Alw21I GWGCWC 3 cut(s) 66, 150, 1008
Alw26I GTCTC 5 cut(s) 251, 536, 770, 895, 921
AlwI GGATC 4 cut(s) 187, 646, 776, 789
Ama87I CYCGRG 3 cut(s) 149, 246, 1143
AoxI GGCC 6 cut(s) 50, 117, 126, 243, 343, 428
ApeKI GCWGC 2 cut(s) 31, 395
AseI ATTAAT 1 cut(s) 597
Asp700I GAANNNNTTC 1 cut(s) 806
AspA2I CCTAGG 2 cut(s) 337, 425
AspLEI GCGC 3 cut(s) 139, 1389, 1554
AspS9I GGNCC 4 cut(s) 244, 343, 416, 985
AsuC2I CCSGG 4 cut(s) 121, 247, 248, 303
AsuHPI GGTGA 1 cut(s) 1232
AvaI CYCGRG 3 cut(s) 149, 246, 1143
AvaII GGWCC 2 cut(s) 416, 985
AvrII CCTAGG 2 cut(s) 337, 425
AxyI CCTNAGG 1 cut(s) 377
BaeGI GKGCMC 2 cut(s) 303, 374
BalI TGGCCA 1 cut(s) 52
BamHI GGATCC 1 cut(s) 781
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 2 cut(s) 66, 1453
BauI CACGAG 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 1530
Bbv12I GWGCWC 3 cut(s) 66, 150, 1008
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 18, 382
BccI CCATC 6 cut(s) 118, 214, 400, 453, 596, 1542
BcgI CGANNNNNNTGC 4 cut(s) 76, 110, 985, 1019
BciT130I CCWGG 2 cut(s) 54, 762
BcnI CCSGG 4 cut(s) 121, 247, 248, 303
BcoDI GTCTC 5 cut(s) 251, 536, 770, 895, 921
BfoI RGCGCY 2 cut(s) 140, 1555
BfuAI ACCTGC 1 cut(s) 1524
BglI GCCNNNNNGGC 2 cut(s) 125, 134
BglII AGATCT 2 cut(s) 42, 611
BisI GCNGC 7 cut(s) 6, 32, 129, 132, 135, 243, 396
BlnI CCTAGG 2 cut(s) 337, 425
BlsI GCNGC 7 cut(s) 7, 33, 130, 133, 136, 244, 397
BmcAI AGTACT 1 cut(s) 914
Bme1390I CCNGG 6 cut(s) 54, 121, 247, 248, 303, 762
Bme18I GGWCC 2 cut(s) 416, 985
BmeRI GACNNNNNGTC 1 cut(s) 264
BmeT110I CYCGRG 3 cut(s) 149, 246, 1143
BmgT120I GGNCC 4 cut(s) 244, 343, 416, 985
BmiI GGNNCC 5 cut(s) 334, 344, 373, 417, 783
BmrFI CCNGG 6 cut(s) 54, 121, 247, 248, 303, 762
BmrI ACTGGG 1 cut(s) 858
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 858
BpiI GAAGAC 1 cut(s) 1530
BplI GAGNNNNNCTC 2 cut(s) 918, 950
BpmI CTGGAG 1 cut(s) 1108
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 4 cut(s) 121, 247, 248, 303
BsaBI GATNNNNATC 1 cut(s) 857
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 2 cut(s) 251, 770
BsaJI CCNNGG 9 cut(s) 53, 129, 212, 246, 262, 337, 425, 481, 675
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 1278
Bse1I ACTGG 6 cut(s) 102, 163, 853, 881, 910, 1125
Bse21I CCTNAGG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 857
BseBI CCWGG 2 cut(s) 54, 762
BseDI CCNNGG 9 cut(s) 53, 129, 212, 246, 262, 337, 425, 481, 675
BseGI GGATG 6 cut(s) 129, 408, 588, 820, 1208, 1553
BseJI GATNNNNATC 1 cut(s) 857
BseLI CCNNNNNNNGG 2 cut(s) 308, 1278
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 6 cut(s) 102, 163, 853, 881, 910, 1125
BseRI GAGGAG 1 cut(s) 1000
BseSI GKGCMC 2 cut(s) 303, 374
BseXI GCAGC 2 cut(s) 18, 382
BseYI CCCAGC 2 cut(s) 200, 312
BsgI GTGCAG 2 cut(s) 611, 1048
Bsh1236I CGCG 3 cut(s) 131, 1352, 1374
Bsh1285I CGRYCG 2 cut(s) 873, 1248
BshFI GGCC 6 cut(s) 52, 119, 128, 245, 345, 430
BshNI GGYRCC 1 cut(s) 371
BsiEI CGRYCG 2 cut(s) 873, 1248
BsiHKAI GWGCWC 3 cut(s) 66, 150, 1008
BsiHKCI CYCGRG 3 cut(s) 149, 246, 1143
BsiSI CCGG 4 cut(s) 120, 247, 303, 866
BslFI GGGAC 4 cut(s) 194, 407, 429, 1061
BslI CCNNNNNNNGG 2 cut(s) 308, 1278
BsmAI GTCTC 5 cut(s) 251, 536, 770, 895, 921
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 4 cut(s) 194, 407, 429, 1061
BsmI GAATGC 3 cut(s) 808, 1138, 1444
BsnI GGCC 6 cut(s) 52, 119, 128, 245, 345, 430
Bso31I GGTCTC 2 cut(s) 251, 770
BsoBI CYCGRG 3 cut(s) 149, 246, 1143
Bsp1286I GDGCHC 6 cut(s) 66, 150, 303, 374, 1008, 1453
Bsp1407I TGTACA 1 cut(s) 106
Bsp143I GATC 9 cut(s) 18, 42, 172, 179, 611, 616, 638, 781, 1287
BspANI GGCC 6 cut(s) 52, 119, 128, 245, 345, 430
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 3 cut(s) 131, 1352, 1374
BspLI GGNNCC 5 cut(s) 334, 344, 373, 417, 783
BspMI ACCTGC 1 cut(s) 1524
BspPI GGATC 4 cut(s) 187, 646, 776, 789
BspT107I GGYRCC 1 cut(s) 371
BspTNI GGTCTC 2 cut(s) 251, 770
BsrBI CCGCTC 1 cut(s) 1148
BsrGI TGTACA 1 cut(s) 106
BsrI ACTGG 6 cut(s) 102, 163, 853, 881, 910, 1125
BssECI CCNNGG 9 cut(s) 53, 129, 212, 246, 262, 337, 425, 481, 675
BssMI GATC 9 cut(s) 18, 42, 172, 179, 611, 616, 638, 781, 1287
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 82
BssT1I CCWWGG 5 cut(s) 262, 337, 425, 481, 675
Bst2BI CACGAG 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 54, 762
Bst4CI ACNGT 3 cut(s) 388, 874, 1154
BstACI GRCGYC 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 466, 756
BstDEI CTNAG 2 cut(s) 237, 377
BstDSI CCRYGG 2 cut(s) 129, 212
BstF5I GGATG 6 cut(s) 129, 408, 588, 820, 1208, 1553
BstFNI CGCG 3 cut(s) 131, 1352, 1374
BstH2I RGCGCY 2 cut(s) 140, 1555
BstHHI GCGC 3 cut(s) 139, 1389, 1554
BstKTI GATC 9 cut(s) 21, 45, 175, 182, 614, 619, 641, 784, 1290
BstMAI GTCTC 5 cut(s) 251, 536, 770, 895, 921
BstMBI GATC 9 cut(s) 18, 42, 172, 179, 611, 616, 638, 781, 1287
BstMCI CGRYCG 2 cut(s) 873, 1248
BstMWI GCNNNNNNNGC 9 cut(s) 98, 125, 134, 145, 242, 803, 1071, 1448, 1549
BstNI CCWGG 2 cut(s) 54, 762
BstNSI RCATGY 3 cut(s) 758, 1403, 1464
BstSCI CCNGG 6 cut(s) 52, 119, 245, 246, 301, 760
BstSLI GKGCMC 2 cut(s) 303, 374
BstUI CGCG 3 cut(s) 131, 1352, 1374
BstV1I GCAGC 2 cut(s) 18, 382
BstV2I GAAGAC 1 cut(s) 1530
BstX2I RGATCY 5 cut(s) 42, 179, 611, 638, 781
BstYI RGATCY 5 cut(s) 42, 179, 611, 638, 781
Bsu36I CCTNAGG 1 cut(s) 377
BsuRI GGCC 6 cut(s) 52, 119, 128, 245, 345, 430
BtgI CCRYGG 2 cut(s) 129, 212
BtgZI GCGATG 1 cut(s) 1298
BtsCI GGATG 6 cut(s) 129, 408, 588, 820, 1208, 1553
BtsIMutI CAGTG 2 cut(s) 109, 1490
BveI ACCTGC 1 cut(s) 1524
Cac8I GCNNGC 2 cut(s) 466, 756
CfoI GCGC 3 cut(s) 139, 1389, 1554
Cfr13I GGNCC 4 cut(s) 244, 343, 416, 985
Cfr42I CCGCGG 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 246
Csp6I GTAC 3 cut(s) 107, 523, 913
CspCI CAANNNNNGTGG 4 cut(s) 194, 229, 1006, 1041
CviQI GTAC 3 cut(s) 107, 523, 913
DdeI CTNAG 2 cut(s) 237, 377
DpnI GATC 9 cut(s) 20, 44, 174, 181, 613, 618, 640, 783, 1289
DpnII GATC 9 cut(s) 18, 42, 172, 179, 611, 616, 638, 781, 1287
DriI GACNNNNNGTC 1 cut(s) 264
EaeI YGGCCR 2 cut(s) 50, 126
Eam1105I GACNNNNNGTC 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 5 cut(s) 262, 337, 425, 481, 675
Eco24I GRGCYC 2 cut(s) 66, 1453
Eco31I GGTCTC 2 cut(s) 251, 770
Eco47I GGWCC 2 cut(s) 416, 985
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 1188
Eco81I CCTNAGG 1 cut(s) 377
Eco88I CYCGRG 3 cut(s) 149, 246, 1143
EcoICRI GAGCTC 1 cut(s) 64
EcoO109I RGGNCCY 3 cut(s) 343, 416, 985
EcoRII CCWGG 2 cut(s) 52, 760
EcoT14I CCWWGG 5 cut(s) 262, 337, 425, 481, 675
EcoT38I GRGCYC 2 cut(s) 66, 1453
ErhI CCWWGG 5 cut(s) 262, 337, 425, 481, 675
Esp3I CGTCTC 1 cut(s) 536
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FaqI GGGAC 4 cut(s) 194, 407, 429, 1061
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 7 cut(s) 6, 32, 129, 132, 135, 243, 396
FokI GGATG 5 cut(s) 136, 415, 575, 827, 1195
FriOI GRGCYC 2 cut(s) 66, 1453
Fsp4HI GCNGC 7 cut(s) 6, 32, 129, 132, 135, 243, 396
GlaI GCGC 3 cut(s) 138, 1388, 1553
GluI GCNGC 7 cut(s) 6, 32, 129, 132, 135, 243, 396
GsaI CCCAGC 2 cut(s) 204, 316
GsuI CTGGAG 1 cut(s) 1108
HaeII RGCGCY 2 cut(s) 140, 1555
HaeIII GGCC 6 cut(s) 52, 119, 128, 245, 345, 430
HapII CCGG 4 cut(s) 120, 247, 303, 866
HhaI GCGC 3 cut(s) 139, 1389, 1554
Hin1I GRCGYC 1 cut(s) 8
Hin6I GCGC 3 cut(s) 137, 1387, 1552
HinP1I GCGC 3 cut(s) 137, 1387, 1552
HincII GTYRAC 1 cut(s) 1221
HindII GTYRAC 1 cut(s) 1221
HindIII AAGCTT 2 cut(s) 350, 510
HinfI GANTC 9 cut(s) 193, 575, 581, 929, 1049, 1180, 1237, 1422, 1480
HpaII CCGG 4 cut(s) 120, 247, 303, 866
HphI GGTGA 1 cut(s) 1232
Hpy166II GTNNAC 5 cut(s) 107, 442, 1017, 1096, 1221
Hpy188I TCNGA 8 cut(s) 68, 580, 616, 971, 1168, 1213, 1273, 1435
Hpy188III TCNNGA 7 cut(s) 183, 254, 566, 687, 834, 1143, 1513
Hpy8I GTNNAC 5 cut(s) 107, 442, 1017, 1096, 1221
Hpy99I CGWCG 3 cut(s) 13, 101, 1061
HpyAV CCTTC 1 cut(s) 966
HpyCH4III ACNGT 3 cut(s) 388, 874, 1154
HpyCH4V TGCA 6 cut(s) 607, 628, 714, 1065, 1403, 1442
HpyF10VI GCNNNNNNNGC 9 cut(s) 98, 125, 134, 145, 242, 803, 1071, 1448, 1549
HpyF3I CTNAG 2 cut(s) 237, 377
Hsp92I GRCGYC 1 cut(s) 8
HspAI GCGC 3 cut(s) 137, 1387, 1552
KspI CCGCGG 1 cut(s) 132
Kzo9I GATC 9 cut(s) 18, 42, 172, 179, 611, 616, 638, 781, 1287
LmnI GCTCC 4 cut(s) 61, 69, 763, 1262
Lsp1109I GCAGC 2 cut(s) 18, 382
LweI GCATC 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 1127, 1177
MalI GATC 9 cut(s) 20, 44, 174, 181, 613, 618, 640, 783, 1289
MbiI CCGCTC 1 cut(s) 1148
MboI GATC 9 cut(s) 18, 42, 172, 179, 611, 616, 638, 781, 1287
MboII GAAGA 8 cut(s) 52, 855, 1040, 1043, 1181, 1333, 1418, 1530
MfeI CAATTG 2 cut(s) 327, 454
MflI RGATCY 5 cut(s) 42, 179, 611, 638, 781
MhlI GDGCHC 6 cut(s) 66, 150, 303, 374, 1008, 1453
MlsI TGGCCA 1 cut(s) 52
MluCI AATT 6 cut(s) 327, 454, 474, 570, 682, 690
MluNI TGGCCA 1 cut(s) 52
MlyI GAGTC 4 cut(s) 584, 923, 1043, 1174
MmeI TCCRAC 1 cut(s) 39
Mox20I TGGCCA 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 806
MscI TGGCCA 1 cut(s) 52
MseI TTAA 3 cut(s) 477, 597, 1413
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 52
MspA1I CMGCKG 2 cut(s) 131, 1331
MspI CCGG 4 cut(s) 120, 247, 303, 866
MspR9I CCNGG 6 cut(s) 54, 121, 247, 248, 303, 762
MunI CAATTG 2 cut(s) 327, 454
Mva1269I GAATGC 3 cut(s) 808, 1138, 1444
MvaI CCWGG 2 cut(s) 54, 762
MvnI CGCG 3 cut(s) 131, 1352, 1374
MwoI GCNNNNNNNGC 9 cut(s) 98, 125, 134, 145, 242, 803, 1071, 1448, 1549
NciI CCSGG 4 cut(s) 121, 247, 248, 303
NdeII GATC 9 cut(s) 18, 42, 172, 179, 611, 616, 638, 781, 1287
NlaIV GGNNCC 5 cut(s) 334, 344, 373, 417, 783
NmuCI GTSAC 1 cut(s) 1177
NspI RCATGY 3 cut(s) 758, 1403, 1464
PaeI GCATGC 1 cut(s) 758
PciI ACATGT 1 cut(s) 1460
PctI GAATGC 3 cut(s) 808, 1138, 1444
PdmI GAANNNNTTC 1 cut(s) 806
PfeI GAWTC 5 cut(s) 193, 581, 1237, 1422, 1480
PkrI GCNGC 7 cut(s) 7, 33, 130, 133, 136, 244, 397
PleI GAGTC 4 cut(s) 583, 923, 1043, 1174
PpsI GAGTC 4 cut(s) 583, 923, 1043, 1174
PpuMI RGGWCCY 2 cut(s) 416, 985
PscI ACATGT 1 cut(s) 1460
PshBI ATTAAT 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 66
Psp5II RGGWCCY 2 cut(s) 416, 985
Psp6I CCWGG 2 cut(s) 52, 760
PspFI CCCAGC 2 cut(s) 200, 312
PspGI CCWGG 2 cut(s) 52, 760
PspN4I GGNNCC 5 cut(s) 334, 344, 373, 417, 783
PspPI GGNCC 4 cut(s) 244, 343, 416, 985
PspPPI RGGWCCY 2 cut(s) 416, 985
PsrI GAACNNNNNNTAC 2 cut(s) 1353, 1385
PsuI RGATCY 5 cut(s) 42, 179, 611, 638, 781
RsaI GTAC 3 cut(s) 108, 524, 914
RsaNI GTAC 3 cut(s) 107, 523, 913
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 66
SacII CCGCGG 1 cut(s) 132
SaqAI TTAA 3 cut(s) 477, 597, 1413
SatI GCNGC 7 cut(s) 6, 32, 129, 132, 135, 243, 396
Sau3AI GATC 9 cut(s) 18, 42, 172, 179, 611, 616, 638, 781, 1287
Sau96I GGNCC 4 cut(s) 244, 343, 416, 985
ScaI AGTACT 1 cut(s) 914
SchI GAGTC 4 cut(s) 584, 923, 1043, 1174
ScrFI CCNGG 6 cut(s) 54, 121, 247, 248, 303, 762
SduI GDGCHC 6 cut(s) 66, 150, 303, 374, 1008, 1453
SfaNI GCATC 1 cut(s) 288
SfiI GGCCNNNNNGGCC 1 cut(s) 125
Sfr303I CCGCGG 1 cut(s) 132
SgrBI CCGCGG 1 cut(s) 132
SinI GGWCC 2 cut(s) 416, 985
SmaI CCCGGG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 1 cut(s) 758
Sse9I AATT 6 cut(s) 327, 454, 474, 570, 682, 690
SspI AATATT 1 cut(s) 1303
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 6 cut(s) 52, 119, 245, 246, 301, 760
StyI CCWWGG 5 cut(s) 262, 337, 425, 481, 675
TaaI ACNGT 3 cut(s) 388, 874, 1154
TaqI TCGA 4 cut(s) 11, 184, 253, 268
TasI AATT 6 cut(s) 327, 454, 474, 570, 682, 690
TatI WGTACW 3 cut(s) 106, 522, 912
TauI GCSGC 5 cut(s) 8, 131, 134, 137, 245
TfiI GAWTC 5 cut(s) 193, 581, 1237, 1422, 1480
Tru1I TTAA 3 cut(s) 477, 597, 1413
Tru9I TTAA 3 cut(s) 477, 597, 1413
TscAI CASTG 2 cut(s) 109, 1490
TseFI GTSAC 1 cut(s) 1177
TseI GCWGC 2 cut(s) 31, 395
Tsp45I GTSAC 1 cut(s) 1177
TspGWI ACGGA 1 cut(s) 353
TspMI CCCGGG 1 cut(s) 246
TspRI CASTG 2 cut(s) 109, 1490
VpaK11BI GGWCC 2 cut(s) 416, 985
VspI ATTAAT 1 cut(s) 597
XbaI TCTAGA 2 cut(s) 686, 833
XceI RCATGY 3 cut(s) 758, 1403, 1464
XcmI CCANNNNNNNNNTGG 2 cut(s) 479, 1526
XmaI CCCGGG 1 cut(s) 246
XmaJI CCTAGG 2 cut(s) 337, 425
XmiI GTMKAC 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 806
ZrmI AGTACT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.