RchiOBHm_Chr6g0271761

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000254
Physical Location & Seq
Forward (+)
31675859 .. 31676385
527 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24376

Sequence Viewer

Length: 468 bp
ATGTGGATGGCACCAAATCCAATCAATCTGGGTTTTAGAGATCACAATAGAGATTGGTTGTCTGGCTTCAGCATAAACTTGGGGGTTGGCCAAATCATCAATGCTGAAGCTAGGGAGATGCTTTCTGGGTTGAAACTGGCTTCTGACCTGAATATTAGAAAGCTTGAAGTAGAATCTGACTCAGCTATCTTTGTTAAGTTGCTGATTGATGGTTGTCCTATATCTCATCCTTTAGGCAACATTATCAACAGTTGTAGGCATCTAATCAATGGTTTTGAAGACGTTAGGATCCGGCATATTTCCAGAGAACGCAACTATACTGCTGATGCTCTTGCTAAGGGAATTCTCAGCCATGACTATGGTATTGTGATTTTTGACACCCCTCCCCTTCATGTTGCTAATGCTTTCAGTGATGATCTTTGCAATCTCCCAAGAGCTAGGAGAGTTAGAACAGGGCCTGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

155

Amino Acids

17.27

Weight (kDa)

6.58

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 13 - 113 7.4e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AclWI GGATC 2 cut(s) 283, 296
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 342
AcuI CTGAAG 2 cut(s) 52, 126
AgsI TTSAA 3 cut(s) 133, 167, 278
AluBI AGCT 4 cut(s) 110, 163, 185, 437
AluI AGCT 4 cut(s) 110, 163, 185, 437
AlwI GGATC 2 cut(s) 283, 296
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 2 cut(s) 88, 455
ApoI RAATTY 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 90
BamHI GGATCC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 285
BccI CCATC 1 cut(s) 203
BfaI CTAG 2 cut(s) 111, 438
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 12, 290
BmsI GCATC 3 cut(s) 108, 268, 316
BpiI GAAGAC 1 cut(s) 285
Bpu10I CCTNAGC 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 12, 226
BseMII CTCAG 2 cut(s) 195, 361
BseNI ACTGG 1 cut(s) 141
BshFI GGCC 2 cut(s) 90, 457
BshNI GGYRCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 292
BsnI GGCC 2 cut(s) 90, 457
Bsp143I GATC 3 cut(s) 40, 288, 415
BspANI GGCC 2 cut(s) 90, 457
BspCNI CTCAG 2 cut(s) 194, 360
BspLI GGNNCC 2 cut(s) 12, 290
BspPI GGATC 2 cut(s) 283, 296
BspT107I GGYRCC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 141
BssMI GATC 3 cut(s) 40, 288, 415
Bst4CI ACNGT 1 cut(s) 251
BstDEI CTNAG 3 cut(s) 181, 336, 347
BstF5I GGATG 2 cut(s) 12, 226
BstKTI GATC 3 cut(s) 43, 291, 418
BstMBI GATC 3 cut(s) 40, 288, 415
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 288
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 2 cut(s) 90, 457
BtsCI GGATG 2 cut(s) 12, 226
BtsIMutI CAGTG 1 cut(s) 415
CaiI CAGNNNCTG 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 455
CviAII CATG 2 cut(s) 353, 392
DdeI CTNAG 3 cut(s) 181, 336, 347
DpnI GATC 3 cut(s) 42, 290, 417
DpnII GATC 3 cut(s) 40, 288, 415
EaeI YGGCCR 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 52, 126
EcoO109I RGGNCCY 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 342
FaeI CATG 2 cut(s) 356, 395
FaiI YATR 7 cut(s) 74, 221, 297, 318, 354, 360, 393
FatI CATG 2 cut(s) 352, 391
FokI GGATG 2 cut(s) 19, 213
FspBI CTAG 2 cut(s) 111, 438
HaeIII GGCC 2 cut(s) 90, 457
HapII CCGG 1 cut(s) 292
Hin1II CATG 2 cut(s) 356, 395
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 2 cut(s) 173, 179
HpaII CCGG 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 145, 178
Hpy188III TCNNGA 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 398, 455
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 423
HpyF3I CTNAG 3 cut(s) 181, 336, 347
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 2 cut(s) 356, 395
Kzo9I GATC 3 cut(s) 40, 288, 415
LpnPI CCDG 8 cut(s) 14, 48, 111, 122, 161, 305, 316, 438
LweI GCATC 3 cut(s) 108, 268, 316
MaeI CTAG 2 cut(s) 111, 438
MaeII ACGT 1 cut(s) 282
MalI GATC 3 cut(s) 42, 290, 417
MboI GATC 3 cut(s) 40, 288, 415
MboII GAAGA 1 cut(s) 290
MflI RGATCY 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 1 cut(s) 342
MluNI TGGCCA 1 cut(s) 90
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 90
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 1 cut(s) 292
NdeII GATC 3 cut(s) 40, 288, 415
NlaIII CATG 2 cut(s) 356, 395
NlaIV GGNNCC 2 cut(s) 12, 290
PfeI GAWTC 1 cut(s) 173
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 12, 290
PspPI GGNCC 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 3 cut(s) 40, 288, 415
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 1 cut(s) 173
SetI ASST 6 cut(s) 112, 150, 165, 187, 285, 439
SfaNI GCATC 3 cut(s) 108, 268, 316
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 1 cut(s) 342
SspI AATATT 1 cut(s) 154
SspMI CTAG 2 cut(s) 111, 438
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 285
TasI AATT 1 cut(s) 342
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 415
TspDTI ATGAA 1 cut(s) 380
TspRI CASTG 1 cut(s) 415
XapI RAATTY 1 cut(s) 342
XspI CTAG 2 cut(s) 111, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.