Rmu_sc0004923.1_g000002

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004923.1
OG0000254
Physical Location & Seq
Reverse (-)
608 .. 4455
3848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004923.1_g000002.1.cds

Sequence Viewer

Length: 855 bp
ctgcgccgccttgctgcgccttacacggtggatatcgctgctagaggatgccacagagacgaccagaaggaggagacgaacctgctgaccaagtttcacggccagagaccaccggatatgcgagttcccgccgggtcggatcaccgggttcgggtcggccatgtttccttgttagaagtcaaacagtctcttttctctattggaggtcccatggcacctggacatgatggtttccctgcaattttctttcagcatcattggcctctgtatgcttctgaaattttccaaactgttcaaggtgccttcaattctagtattatccctcctggtctgaaccacactataatttctctaatttctaagattgaagaacctcaaaacatggctaattttagacctatcagtttatggaccacaatctataaggttactggctttcaagttaacttgggtgttggtgctatccttgatgctgaggcttggggtctttattttggtctgagacttgcaagaaccctccacatttctaaccttgagattgagtctgattctgctattctggttcatttacttcagaggcatgatctctatctgcaccctcttgggtctttgattaatgattgccatcgcttcatttctgctttgggaaataccaagatagatgtgattcgagatggcttgggcacggtcccagctcgttttaaggactggaaaggccaggacggaaaaaaatcgggctggtcctcggacaaagaagaattagaaattctctcattatctacgattgatcttatggggaaggaggacaagggagagaagggaaaagaaaagaatctgatggggaaggaggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

284

Amino Acids

31.66

Weight (kDa)

6.71

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 90
AccB1I GGYRCC 2 cut(s) 214, 299
AciI CCGC 2 cut(s) 7, 129
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 2 cut(s) 100, 157
AcsI RAATTY 2 cut(s) 279, 765
AcuI CTGAAG 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 70, 151
AgsI TTSAA 4 cut(s) 296, 307, 368, 440
AjnI CCWGG 3 cut(s) 217, 325, 717
AluBI AGCT 1 cut(s) 695
AluI AGCT 1 cut(s) 695
Alw26I GTCTC 5 cut(s) 51, 68, 100, 192, 496
AlwI GGATC 1 cut(s) 147
AoxI GGCC 4 cut(s) 100, 157, 260, 715
ApeKI GCWGC 2 cut(s) 14, 38
ApoI RAATTY 2 cut(s) 279, 765
AseI ATTAAT 1 cut(s) 615
AspLEI GCGC 2 cut(s) 6, 19
AspS9I GGNCC 4 cut(s) 206, 411, 688, 741
AsuC2I CCSGG 2 cut(s) 133, 146
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 4 cut(s) 206, 411, 688, 741
BaeGI GKGCMC 1 cut(s) 686
BanI GGYRCC 2 cut(s) 214, 299
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 25
BccI CCATC 4 cut(s) 221, 633, 668, 832
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 3 cut(s) 219, 327, 719
BcnI CCSGG 2 cut(s) 133, 146
BcoDI GTCTC 5 cut(s) 51, 68, 100, 192, 496
BfaI CTAG 3 cut(s) 42, 312, 853
BfuAI ACCTGC 1 cut(s) 90
BisI GCNGC 3 cut(s) 7, 15, 39
BlsI GCNGC 3 cut(s) 8, 16, 40
Bme1390I CCNGG 5 cut(s) 133, 146, 219, 327, 719
Bme18I GGWCC 4 cut(s) 206, 411, 688, 741
BmgT120I GGNCC 4 cut(s) 206, 411, 688, 741
BmiI GGNNCC 4 cut(s) 208, 216, 301, 690
BmrFI CCNGG 5 cut(s) 133, 146, 219, 327, 719
BmsI GCATC 3 cut(s) 38, 262, 460
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 2 cut(s) 133, 146
BsaBI GATNNNNATC 2 cut(s) 588, 624
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 210, 744
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 151
Bse1I ACTGG 2 cut(s) 436, 713
Bse8I GATNNNNATC 2 cut(s) 588, 624
BseBI CCWGG 3 cut(s) 219, 327, 719
BseDI CCNNGG 2 cut(s) 210, 744
BseGI GGATG 1 cut(s) 53
BseJI GATNNNNATC 2 cut(s) 588, 624
BseLI CCNNNNNNNGG 2 cut(s) 70, 151
BseMII CTCAG 2 cut(s) 465, 491
BseNI ACTGG 2 cut(s) 436, 713
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 686
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 691
BsgI GTGCAG 1 cut(s) 578
BshFI GGCC 4 cut(s) 102, 159, 262, 717
BshNI GGYRCC 2 cut(s) 214, 299
BsiSI CCGG 3 cut(s) 113, 132, 145
BslFI GGGAC 2 cut(s) 192, 674
BslI CCNNNNNNNGG 2 cut(s) 70, 151
BsmAI GTCTC 5 cut(s) 51, 68, 100, 192, 496
BsmBI CGTCTC 2 cut(s) 51, 68
BsmFI GGGAC 2 cut(s) 192, 674
BsnI GGCC 4 cut(s) 102, 159, 262, 717
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 686
Bsp143I GATC 3 cut(s) 139, 583, 787
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 2 cut(s) 7, 129
BspANI GGCC 4 cut(s) 102, 159, 262, 717
BspCNI CTCAG 2 cut(s) 466, 492
BspLI GGNNCC 4 cut(s) 208, 216, 301, 690
BspMI ACCTGC 1 cut(s) 90
BspPI GGATC 1 cut(s) 147
BspT107I GGYRCC 2 cut(s) 214, 299
BspTNI GGTCTC 1 cut(s) 100
BsrI ACTGG 2 cut(s) 436, 713
BssECI CCNNGG 2 cut(s) 210, 744
BssMI GATC 3 cut(s) 139, 583, 787
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 3 cut(s) 219, 327, 719
Bst4CI ACNGT 4 cut(s) 28, 186, 292, 688
BstDEI CTNAG 3 cut(s) 360, 474, 500
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 53
BstHHI GCGC 2 cut(s) 6, 19
BstKTI GATC 3 cut(s) 142, 586, 790
BstMAI GTCTC 5 cut(s) 51, 68, 100, 192, 496
BstMBI GATC 3 cut(s) 139, 583, 787
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNI CCWGG 3 cut(s) 219, 327, 719
BstSCI CCNGG 5 cut(s) 131, 144, 217, 325, 717
BstSLI GKGCMC 1 cut(s) 686
BstV1I GCAGC 1 cut(s) 25
BsuRI GGCC 4 cut(s) 102, 159, 262, 717
BtgI CCRYGG 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 611
BtsCI GGATG 1 cut(s) 53
BveI ACCTGC 1 cut(s) 90
CfoI GCGC 2 cut(s) 6, 19
Cfr13I GGNCC 4 cut(s) 206, 411, 688, 741
CviAII CATG 5 cut(s) 161, 211, 224, 382, 581
DdeI CTNAG 3 cut(s) 360, 474, 500
DpnI GATC 3 cut(s) 141, 585, 789
DpnII GATC 3 cut(s) 139, 583, 787
EaeI YGGCCR 2 cut(s) 100, 157
Eco130I CCWWGG 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 100
Eco32I GATATC 1 cut(s) 34
Eco47I GGWCC 4 cut(s) 206, 411, 688, 741
Eco57I CTGAAG 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 217, 325, 717
EcoRV GATATC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 2 cut(s) 51, 68
FaeI CATG 5 cut(s) 164, 214, 227, 385, 584
FaqI GGGAC 2 cut(s) 192, 674
FatI CATG 5 cut(s) 160, 210, 223, 381, 580
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 7, 15, 39
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 7, 15, 39
FspBI CTAG 3 cut(s) 42, 312, 853
GlaI GCGC 2 cut(s) 5, 18
GluI GCNGC 3 cut(s) 7, 15, 39
GsaI CCCAGC 1 cut(s) 695
HaeIII GGCC 4 cut(s) 102, 159, 262, 717
HapII CCGG 3 cut(s) 113, 132, 145
HhaI GCGC 2 cut(s) 6, 19
Hin1II CATG 5 cut(s) 164, 214, 227, 385, 584
Hin6I GCGC 2 cut(s) 4, 17
HinP1I GCGC 2 cut(s) 4, 17
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 4 cut(s) 542, 548, 667, 832
HpaI GTTAAC 1 cut(s) 445
HpaII CCGG 3 cut(s) 113, 132, 145
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 8 cut(s) 139, 277, 333, 501, 547, 576, 748, 837
Hpy188III TCNNGA 1 cut(s) 671
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 5 cut(s) 61, 313, 793, 811, 838
HpyCH4III ACNGT 4 cut(s) 28, 186, 292, 688
HpyCH4V TGCA 3 cut(s) 239, 509, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 3 cut(s) 360, 474, 500
Hsp92II CATG 5 cut(s) 164, 214, 227, 385, 584
HspAI GCGC 2 cut(s) 4, 17
KspAI GTTAAC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 139, 583, 787
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 3 cut(s) 38, 262, 460
MaeI CTAG 3 cut(s) 42, 312, 853
MaeIII GTNAC 1 cut(s) 427
MalI GATC 3 cut(s) 141, 585, 789
MboI GATC 3 cut(s) 139, 583, 787
MboII GAAGA 2 cut(s) 380, 767
MhlI GDGCHC 1 cut(s) 686
MluCI AATT 8 cut(s) 240, 279, 307, 345, 354, 388, 758, 765
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 117
MseI TTAA 3 cut(s) 444, 615, 702
MspI CCGG 3 cut(s) 113, 132, 145
MspR9I CCNGG 5 cut(s) 133, 146, 219, 327, 719
MvaI CCWGG 3 cut(s) 219, 327, 719
MwoI GCNNNNNNNGC 1 cut(s) 259
NciI CCSGG 2 cut(s) 133, 146
NcoI CCATGG 1 cut(s) 210
NdeII GATC 3 cut(s) 139, 583, 787
NlaIII CATG 5 cut(s) 164, 214, 227, 385, 584
NlaIV GGNNCC 4 cut(s) 208, 216, 301, 690
PfeI GAWTC 3 cut(s) 548, 667, 832
PkrI GCNGC 3 cut(s) 8, 16, 40
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
PpuMI RGGWCCY 1 cut(s) 206
PshBI ATTAAT 1 cut(s) 615
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 3 cut(s) 217, 325, 717
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 3 cut(s) 217, 325, 717
PspN4I GGNNCC 4 cut(s) 208, 216, 301, 690
PspPI GGNCC 4 cut(s) 206, 411, 688, 741
PspPPI RGGWCCY 1 cut(s) 206
SaqAI TTAA 3 cut(s) 444, 615, 702
SatI GCNGC 3 cut(s) 7, 15, 39
Sau3AI GATC 3 cut(s) 139, 583, 787
Sau96I GGNCC 4 cut(s) 206, 411, 688, 741
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 5 cut(s) 133, 146, 219, 327, 719
SduI GDGCHC 1 cut(s) 686
SetI ASST 9 cut(s) 84, 208, 220, 301, 376, 400, 429, 534, 697
SfaNI GCATC 3 cut(s) 38, 262, 460
SinI GGWCC 4 cut(s) 206, 411, 688, 741
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 8 cut(s) 240, 279, 307, 345, 354, 388, 758, 765
SsiI CCGC 2 cut(s) 7, 129
SspMI CTAG 3 cut(s) 42, 312, 853
StyD4I CCNGG 5 cut(s) 131, 144, 217, 325, 717
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 4 cut(s) 28, 186, 292, 688
TaqI TCGA 1 cut(s) 670
TasI AATT 8 cut(s) 240, 279, 307, 345, 354, 388, 758, 765
TauI GCSGC 1 cut(s) 9
TfiI GAWTC 3 cut(s) 548, 667, 832
Tru1I TTAA 3 cut(s) 444, 615, 702
Tru9I TTAA 3 cut(s) 444, 615, 702
TseI GCWGC 2 cut(s) 14, 38
TspDTI ATGAA 2 cut(s) 554, 622
TspGWI ACGGA 1 cut(s) 738
VpaK11BI GGWCC 4 cut(s) 206, 411, 688, 741
VspI ATTAAT 1 cut(s) 615
XapI RAATTY 2 cut(s) 279, 765
XspI CTAG 3 cut(s) 42, 312, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.