RchiOBHm_Chr2g0132921

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000254
Physical Location & Seq
Forward (+)
49489425 .. 49490263
839 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50413

Sequence Viewer

Length: 771 bp
ATGCCCGAGACTCTTCTTCATCTTTTCAGGGATTGTCCAAAAGCCATGGCTGTTTGGAGAACTTTCAATTGGCCTACTGCTGTGAAACACACTTTCAACCTTGATTGGATTGGATGGCTTGCTGCAAATCTCCACTGTAAAGTAATTTACTCTAATAATATTCAGTGGTGTAGTATCTTTGTCTTCATCTGTTGGTATATGTGGAAATGGCGAAATAAGGATATTTTTGACGTTGGTTTTCATAGACCCTATAATACCTCTCACATCATTCTGAATGCTACGATTGAGTGGTCTCATGCTCAAGCTAAACTTAACTTGGTGGATCAATATTGTTTCAATATGTTTTCTTGGACCATGCCTGATGATGGTTATGTGAAACTTAATGTGGATGGCACAAGAGCTGGTCAATCAGGACAAATTGGTGCTGGTGGAGTATTACGTGACCATAATGGTGATTGGCTTTCAGGTTTTATGATTAATGTTGGTAAAGGACAGGTCCTTACTGCTGAGGCTTGGGGCTTGCTTTCTGGCTTGAAACTTGCTACTGATTTACAGGTTAATAAGATTGAAATTGAATCTGACTCTGCCATTCTCATCAAACTCATTGTTGAAGGCTGTGAAAGTTCCCATCCTCTTGGAAGCATTTTGAATAGCTGCAAGTCTCTACTTCATGGTTTTGAAGATGTGAAGATTAAGCATATTTTTAGAGAAAGCAATATGACAGCAGATGCCATGGCTAAGAGCAGCCTCTCTCATGATCCTGGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

256

Amino Acids

28.96

Weight (kDa)

6.58

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 128 - 248 6.4e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 330, 752
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 9 cut(s) 67, 97, 337, 535, 569, 575, 611, 649, 680
AjnI CCWGG 1 cut(s) 760
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 3 cut(s) 305, 401, 654
AluI AGCT 3 cut(s) 305, 401, 654
Alw26I GTCTC 3 cut(s) 2, 297, 666
AlwI GGATC 2 cut(s) 330, 752
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 122, 654, 744
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 351, 496
AsuHPI GGTGA 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 5
AvaII GGWCC 2 cut(s) 351, 496
BbsI GAAGAC 1 cut(s) 175
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 3 cut(s) 109, 641, 756
BccI CCATC 4 cut(s) 108, 359, 383, 636
BciT130I CCWGG 1 cut(s) 762
BcoDI GTCTC 3 cut(s) 2, 297, 666
BisI GCNGC 3 cut(s) 123, 655, 745
BlsI GCNGC 3 cut(s) 124, 656, 746
Bme1390I CCNGG 1 cut(s) 762
Bme18I GGWCC 2 cut(s) 351, 496
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 351, 496
BmrFI CCNGG 1 cut(s) 762
BmsI GCATC 1 cut(s) 718
BpiI GAAGAC 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 45, 732, 761
Bsc4I CCNNNNNNNGG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 762
BseDI CCNNGG 3 cut(s) 45, 732, 761
BseGI GGATG 3 cut(s) 119, 394, 628
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 1 cut(s) 498
BseXI GCAGC 3 cut(s) 109, 641, 756
BshFI GGCC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 3 cut(s) 2, 297, 666
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 5
Bsp143I GATC 2 cut(s) 322, 757
Bsp19I CCATGG 2 cut(s) 45, 732
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 499
BspHI TCATGA 1 cut(s) 754
BspPI GGATC 2 cut(s) 330, 752
BspTNI GGTCTC 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 45, 732, 761
BssMI GATC 2 cut(s) 322, 757
BssT1I CCWWGG 2 cut(s) 45, 732
Bst2UI CCWGG 1 cut(s) 762
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 120, 521
BstDEI CTNAG 2 cut(s) 507, 738
BstDSI CCRYGG 2 cut(s) 45, 732
BstF5I GGATG 3 cut(s) 119, 394, 628
BstKTI GATC 2 cut(s) 325, 760
BstMAI GTCTC 3 cut(s) 2, 297, 666
BstMBI GATC 2 cut(s) 322, 757
BstNI CCWGG 1 cut(s) 762
BstSCI CCNGG 1 cut(s) 760
BstV1I GCAGC 3 cut(s) 109, 641, 756
BstV2I GAAGAC 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 635
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 2 cut(s) 45, 732
BtsCI GGATG 3 cut(s) 119, 394, 628
BtsIMutI CAGTG 2 cut(s) 133, 170
Cac8I GCNNGC 2 cut(s) 120, 521
CciI TCATGA 1 cut(s) 754
Cfr13I GGNCC 2 cut(s) 351, 496
CviAII CATG 6 cut(s) 46, 296, 355, 671, 733, 755
DdeI CTNAG 2 cut(s) 507, 738
DpnI GATC 2 cut(s) 324, 759
DpnII GATC 2 cut(s) 322, 757
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco130I CCWWGG 2 cut(s) 45, 732
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 351, 496
Eco88I CYCGRG 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 760
EcoT14I CCWWGG 2 cut(s) 45, 732
ErhI CCWWGG 2 cut(s) 45, 732
FaeI CATG 6 cut(s) 49, 299, 358, 674, 736, 758
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 6 cut(s) 45, 295, 354, 670, 732, 754
Fnu4HI GCNGC 3 cut(s) 123, 655, 745
FokI GGATG 3 cut(s) 126, 401, 615
Fsp4HI GCNGC 3 cut(s) 123, 655, 745
GluI GCNGC 3 cut(s) 123, 655, 745
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 6 cut(s) 49, 299, 358, 674, 736, 758
HinfI GANTC 3 cut(s) 10, 575, 581
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 273, 580
Hpy188III TCNNGA 2 cut(s) 411, 755
HpyAV CCTTC 1 cut(s) 605
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 2 cut(s) 231, 439
HpyCH4V TGCA 2 cut(s) 125, 657
HpyF3I CTNAG 2 cut(s) 507, 738
HpySE526I ACGT 2 cut(s) 231, 439
Hsp92II CATG 6 cut(s) 49, 299, 358, 674, 736, 758
Kzo9I GATC 2 cut(s) 322, 757
Lsp1109I GCAGC 3 cut(s) 109, 641, 756
LweI GCATC 1 cut(s) 718
MaeII ACGT 2 cut(s) 231, 439
MaeIII GTNAC 1 cut(s) 440
MalI GATC 2 cut(s) 324, 759
MboI GATC 2 cut(s) 322, 757
MboII GAAGA 5 cut(s) 5, 8, 175, 692, 700
MfeI CAATTG 1 cut(s) 67
MluCI AATT 4 cut(s) 67, 144, 417, 570
MlyI GAGTC 2 cut(s) 4, 575
MnlI CCTC 4 cut(s) 268, 502, 642, 758
MseI TTAA 5 cut(s) 312, 381, 477, 558, 693
MslI CAYNNNNRTG 1 cut(s) 450
MspR9I CCNGG 1 cut(s) 762
MunI CAATTG 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 762
NcoI CCATGG 2 cut(s) 45, 732
NdeII GATC 2 cut(s) 322, 757
NlaIII CATG 6 cut(s) 49, 299, 358, 674, 736, 758
NmuCI GTSAC 1 cut(s) 440
PagI TCATGA 1 cut(s) 754
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 575
PkrI GCNGC 3 cut(s) 124, 656, 746
PleI GAGTC 2 cut(s) 4, 575
PpsI GAGTC 2 cut(s) 4, 575
Ppu21I YACGTR 1 cut(s) 440
PpuMI RGGWCCY 1 cut(s) 496
PshBI ATTAAT 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 760
PspGI CCWGG 1 cut(s) 760
PspPI GGNCC 2 cut(s) 351, 496
PspPPI RGGWCCY 1 cut(s) 496
RseI CAYNNNNRTG 1 cut(s) 450
SaqAI TTAA 5 cut(s) 312, 381, 477, 558, 693
SatI GCNGC 3 cut(s) 123, 655, 745
Sau3AI GATC 2 cut(s) 322, 757
Sau96I GGNCC 2 cut(s) 351, 496
SchI GAGTC 2 cut(s) 4, 575
ScrFI CCNGG 1 cut(s) 762
SfaNI GCATC 1 cut(s) 718
SinI GGWCC 2 cut(s) 351, 496
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 4 cut(s) 67, 144, 417, 570
SspI AATATT 2 cut(s) 160, 329
StyD4I CCNGG 1 cut(s) 760
StyI CCWWGG 2 cut(s) 45, 732
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 2 cut(s) 234, 442
TasI AATT 4 cut(s) 67, 144, 417, 570
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 5 cut(s) 312, 381, 477, 558, 693
Tru9I TTAA 5 cut(s) 312, 381, 477, 558, 693
TscAI CASTG 2 cut(s) 140, 170
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 3 cut(s) 122, 654, 744
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 4 cut(s) 8, 175, 230, 659
TspRI CASTG 2 cut(s) 140, 170
VpaK11BI GGWCC 2 cut(s) 351, 496
VspI ATTAAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.