Rroxscaffold_1G00026050

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000254
Physical Location & Seq
Reverse (-)
32721082 .. 32725248
4167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026050.1

Sequence Viewer

Length: 1185 bp
ATGCTTGCTAAGGCAAGCTGGAGATTGTTCAATAATGACTCTGGTCTATGGGCTAATATCTACTCCAAGAAATATATGAAGGACTGCAGCCTATTTGATGAAAATTATTTACCTCCTCCTGATTGTTCTAGCACTTGGAGAAGTATTGCTCATGGTGCTATCTTGTTGAAAAAGAATCTTAAATGGCGTGTTGGTGATGGTAAAACCATTAGATTCTGGTCTGATACTTGGATTCTTCCCACTGCCCTCAGTAATTACTCTCTCCCTTCTGCCAACATTAATCCTCATGCCACGGTTTGTGAATTCTGGAATGACTTTGGTTGGGATATTGATCTTCTCTCCTCTGTTGTGCCAAGTGAAATTGTCAACCTCATTATCAATGCTCCTACTGGTTTTGAGGGCTGTGGAGATGACACTCTAATATGGGGTGCTACCTCAAATGGCTGCTTTACTGTGAATTCTGCTTACAACTCTACCTTTGACTTCTCTGAGCAGTATCCTCAATGGAAAATGTTATGGAAACTGAACTGTCCTCCTAAGCTTATGACTTTTATCTGGACTGTTTTTCACAAGAAACTGCTTACAAACAAGCAACGAGTCAGAAGAGGCCTCACTAATTGTGCTACTTGTCCAATTTGCTTGAGAGCTGAGGAATCTCTCATCCATCTGTTTAGGGACTGTCCCAGATCTAATACTATTTGGAGGTCTATGCTTAAACCTGGTACCATCCTTAATTCTTTTTCTCTTGATTGGAATGGATGGATTACTGCCCAACTCCACTGCCACTCTAAAATTCATAATAATATTTCATGGTGCAATTTATTTGTCTTTGTGTGCTGGTACATTTGGAAATGGAGGAATAAGCAAATCTTTGATCCTGCTTTTACCATGCCTGCACATCCCTTGAAAGTCATTTTTGATTATGCAGATGAGTGGATGGGTGCCCAAACTATGGCCAATGTTACTGATATGTATAGCTACACTATGCTTTGTTGGTTAAAGCCTTCTGAGAATTTTTATAAGCTGAATATTGATGGTACTAGAGTTTCTCCTTCTGGAAGAATTGGTGCTGGTGGGGTCATTAGGGATCAGCTTGGGTTATGGATTATTGGTTTCCAAATTAAATTAACCTTGGTTCTAGTGAAATTCTGGAGGCTGAAGCCTGGGGCCTTTACTATGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

394

Amino Acids

45.44

Weight (kDa)

8.99

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 150 - 234 3.5e-19 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1020
Acc65I GGTACC 1 cut(s) 722
AccB1I GGYRCC 2 cut(s) 722, 941
AccB7I CCANNNNNTGG 1 cut(s) 952
AclWI GGATC 2 cut(s) 869, 1095
AcoI YGGCCR 1 cut(s) 954
AcsI RAATTY 5 cut(s) 302, 457, 792, 1012, 1145
AcuI CTGAAG 1 cut(s) 1178
AfaI GTAC 3 cut(s) 724, 842, 1039
AfiI CCNNNNNNNGG 1 cut(s) 952
AgsI TTSAA 3 cut(s) 31, 169, 907
AjnI CCWGG 2 cut(s) 718, 1162
AluBI AGCT 6 cut(s) 18, 541, 647, 978, 1024, 1093
AluI AGCT 6 cut(s) 18, 541, 647, 978, 1024, 1093
AlwI GGATC 2 cut(s) 869, 1095
AoxI GGCC 4 cut(s) 607, 954, 1167, 1179
ApeKI GCWGC 2 cut(s) 87, 444
ApoI RAATTY 5 cut(s) 302, 457, 792, 1012, 1145
AseI ATTAAT 1 cut(s) 279
Asp718I GGTACC 1 cut(s) 722
AspS9I GGNCC 1 cut(s) 1167
AsuHPI GGTGA 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 946
BaeI ACNNNNGTAYC 2 cut(s) 1029, 1062
BalI TGGCCA 1 cut(s) 956
BanI GGYRCC 2 cut(s) 722, 941
BbvCI CCTCAGC 1 cut(s) 648
BbvI GCAGC 2 cut(s) 99, 431
BccI CCATC 6 cut(s) 191, 672, 734, 753, 931, 1028
BciT130I CCWGG 2 cut(s) 720, 1164
BciVI GTATCC 1 cut(s) 507
BfaI CTAG 3 cut(s) 129, 1041, 1139
BfmI CTRYAG 1 cut(s) 85
BfuI GTATCC 1 cut(s) 507
BglII AGATCT 1 cut(s) 686
BisI GCNGC 2 cut(s) 88, 445
BlsI GCNGC 2 cut(s) 89, 446
Bme1390I CCNGG 2 cut(s) 720, 1164
BmgT120I GGNCC 1 cut(s) 1167
BmiI GGNNCC 3 cut(s) 724, 943, 1168
BmrFI CCNGG 2 cut(s) 720, 1164
BoxI GACNNNNGTC 1 cut(s) 42
BpmI CTGGAG 2 cut(s) 40, 1171
Bpu10I CCTNAGC 3 cut(s) 9, 537, 648
BpuEI CTTGAG 1 cut(s) 661
BsaBI GATNNNNATC 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 291, 1131, 1163
Bsc4I CCNNNNNNNGG 1 cut(s) 952
Bse1I ACTGG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 2 cut(s) 720, 1164
BseDI CCNNGG 3 cut(s) 291, 1131, 1163
BseGI GGATG 5 cut(s) 660, 726, 764, 898, 942
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 952
BseMII CTCAG 4 cut(s) 262, 480, 639, 999
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 2 cut(s) 105, 331
BseSI GKGCMC 1 cut(s) 946
BseXI GCAGC 2 cut(s) 99, 431
BsgI GTGCAG 1 cut(s) 879
BshFI GGCC 4 cut(s) 609, 956, 1169, 1181
BshNI GGYRCC 2 cut(s) 722, 941
BslFI GGGAC 2 cut(s) 666, 689
BslI CCNNNNNNNGG 1 cut(s) 952
BsmFI GGGAC 2 cut(s) 666, 689
BsnI GGCC 4 cut(s) 609, 956, 1169, 1181
Bsp1286I GDGCHC 1 cut(s) 946
Bsp143I GATC 4 cut(s) 331, 686, 874, 1087
BspANI GGCC 4 cut(s) 609, 956, 1169, 1181
BspCNI CTCAG 4 cut(s) 261, 481, 640, 1000
BspLI GGNNCC 3 cut(s) 724, 943, 1168
BspMAI CTGCAG 1 cut(s) 89
BspPI GGATC 2 cut(s) 869, 1095
BspT107I GGYRCC 2 cut(s) 722, 941
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 3 cut(s) 291, 1131, 1163
BssMI GATC 4 cut(s) 331, 686, 874, 1087
BssT1I CCWWGG 1 cut(s) 1131
Bst2UI CCWGG 2 cut(s) 720, 1164
Bst4CI ACNGT 5 cut(s) 295, 454, 530, 562, 680
Bst6I CTCTTC 1 cut(s) 598
BstC8I GCNNGC 3 cut(s) 6, 16, 894
BstDEI CTNAG 6 cut(s) 9, 248, 489, 537, 648, 1008
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 5 cut(s) 660, 726, 764, 898, 942
BstKTI GATC 4 cut(s) 334, 689, 877, 1090
BstMBI GATC 4 cut(s) 331, 686, 874, 1087
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 720, 1164
BstPAI GACNNNNGTC 1 cut(s) 42
BstSCI CCNGG 2 cut(s) 718, 1162
BstSFI CTRYAG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 946
BstV1I GCAGC 2 cut(s) 99, 431
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 4 cut(s) 609, 956, 1169, 1181
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 5 cut(s) 660, 726, 764, 898, 942
BtsI GCAGTG 2 cut(s) 240, 778
BtsIMutI CAGTG 2 cut(s) 240, 778
Cac8I GCNNGC 3 cut(s) 6, 16, 894
Cfr13I GGNCC 1 cut(s) 1167
CsiI ACCWGGT 1 cut(s) 718
Csp6I GTAC 3 cut(s) 723, 841, 1038
CviAII CATG 4 cut(s) 152, 287, 810, 889
CviQI GTAC 3 cut(s) 723, 841, 1038
DdeI CTNAG 6 cut(s) 9, 248, 489, 537, 648, 1008
DpnI GATC 4 cut(s) 333, 688, 876, 1089
DpnII GATC 4 cut(s) 331, 686, 874, 1087
EaeI YGGCCR 1 cut(s) 954
Eam1104I CTCTTC 1 cut(s) 598
EarI CTCTTC 1 cut(s) 598
Eco130I CCWWGG 1 cut(s) 1131
Eco147I AGGCCT 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 1178
EcoO109I RGGNCCY 1 cut(s) 1167
EcoRI GAATTC 2 cut(s) 302, 457
EcoRII CCWGG 2 cut(s) 718, 1162
EcoT14I CCWWGG 1 cut(s) 1131
ErhI CCWWGG 1 cut(s) 1131
FaeI CATG 4 cut(s) 155, 290, 813, 892
FalI AAGNNNNNCTT 2 cut(s) 854, 886
FaqI GGGAC 2 cut(s) 666, 689
FatI CATG 4 cut(s) 151, 286, 809, 888
Fnu4HI GCNGC 2 cut(s) 88, 445
FokI GGATG 5 cut(s) 647, 713, 771, 885, 949
Fsp4HI GCNGC 2 cut(s) 88, 445
FspBI CTAG 3 cut(s) 129, 1041, 1139
GluI GCNGC 2 cut(s) 88, 445
GsuI CTGGAG 2 cut(s) 40, 1171
HaeIII GGCC 4 cut(s) 609, 956, 1169, 1181
Hin1II CATG 4 cut(s) 155, 290, 813, 892
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 6 cut(s) 38, 175, 213, 232, 597, 653
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 4 cut(s) 223, 490, 602, 1009
Hpy188III TCNNGA 6 cut(s) 119, 307, 556, 746, 1056, 1150
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 4 cut(s) 73, 276, 1014, 1062
HpyCH4III ACNGT 5 cut(s) 295, 454, 530, 562, 680
HpyCH4V TGCA 4 cut(s) 87, 816, 896, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 6 cut(s) 9, 248, 489, 537, 648, 1008
Hsp92II CATG 4 cut(s) 155, 290, 813, 892
KpnI GGTACC 1 cut(s) 726
Kzo9I GATC 4 cut(s) 331, 686, 874, 1087
LmnI GCTCC 1 cut(s) 388
Lsp1109I GCAGC 2 cut(s) 99, 431
MabI ACCWGGT 1 cut(s) 718
MaeI CTAG 3 cut(s) 129, 1041, 1139
MaeIII GTNAC 1 cut(s) 961
MalI GATC 4 cut(s) 333, 688, 876, 1089
MboI GATC 4 cut(s) 331, 686, 874, 1087
MboII GAAGA 4 cut(s) 227, 326, 615, 1071
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 1 cut(s) 946
MlsI TGGCCA 1 cut(s) 956
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 2 cut(s) 32, 606
Mox20I TGGCCA 1 cut(s) 956
MscI TGGCCA 1 cut(s) 956
MseI TTAA 7 cut(s) 180, 279, 714, 732, 998, 1122, 1127
Msp20I TGGCCA 1 cut(s) 956
MspR9I CCNGG 2 cut(s) 720, 1164
MvaI CCWGG 2 cut(s) 720, 1164
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 4 cut(s) 331, 686, 874, 1087
NlaIII CATG 4 cut(s) 155, 290, 813, 892
NlaIV GGNNCC 3 cut(s) 724, 943, 1168
PceI AGGCCT 1 cut(s) 609
PfeI GAWTC 4 cut(s) 175, 213, 232, 653
PflMI CCANNNNNTGG 1 cut(s) 952
PkrI GCNGC 2 cut(s) 89, 446
PleI GAGTC 2 cut(s) 32, 605
PpsI GAGTC 2 cut(s) 32, 605
PshAI GACNNNNGTC 1 cut(s) 42
PshBI ATTAAT 1 cut(s) 279
PsiI TTATAA 1 cut(s) 1020
Psp6I CCWGG 2 cut(s) 718, 1162
PspGI CCWGG 2 cut(s) 718, 1162
PspN4I GGNNCC 3 cut(s) 724, 943, 1168
PspPI GGNCC 1 cut(s) 1167
PstI CTGCAG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 686
RsaI GTAC 3 cut(s) 724, 842, 1039
RsaNI GTAC 3 cut(s) 723, 841, 1038
SaqAI TTAA 7 cut(s) 180, 279, 714, 732, 998, 1122, 1127
SatI GCNGC 2 cut(s) 88, 445
Sau3AI GATC 4 cut(s) 331, 686, 874, 1087
Sau96I GGNCC 1 cut(s) 1167
SchI GAGTC 2 cut(s) 32, 606
ScrFI CCNGG 2 cut(s) 720, 1164
SduI GDGCHC 1 cut(s) 946
SexAI ACCWGGT 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 640
SmoI CTYRAG 1 cut(s) 640
SseBI AGGCCT 1 cut(s) 609
SspI AATATT 2 cut(s) 805, 1030
SspMI CTAG 3 cut(s) 129, 1041, 1139
StuI AGGCCT 1 cut(s) 609
StyD4I CCNGG 2 cut(s) 718, 1162
StyI CCWWGG 1 cut(s) 1131
TaaI ACNGT 5 cut(s) 295, 454, 530, 562, 680
TfiI GAWTC 4 cut(s) 175, 213, 232, 653
Tru1I TTAA 7 cut(s) 180, 279, 714, 732, 998, 1122, 1127
Tru9I TTAA 7 cut(s) 180, 279, 714, 732, 998, 1122, 1127
TscAI CASTG 2 cut(s) 247, 785
TseI GCWGC 2 cut(s) 87, 444
TspDTI ATGAA 4 cut(s) 92, 114, 785, 798
TspRI CASTG 2 cut(s) 247, 785
Van91I CCANNNNNTGG 1 cut(s) 952
VspI ATTAAT 1 cut(s) 279
XapI RAATTY 5 cut(s) 302, 457, 792, 1012, 1145
XspI CTAG 3 cut(s) 129, 1041, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.