FvH4_2g09413

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000254
Physical Location & Seq
Forward (+)
8348528 .. 8349034
507 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09413.t1

Sequence Viewer

Length: 507 bp
ATGAGAACTGTTTTTAAGCTTAATATTGATGGCACCAGAAGCATATCCTCTGGAAAAATTGGAGCTGGTGGAGTCATAAGAGATCATAGTGGTAACTGGGTTTGTGGTTTTCAAATCAATCTTGGAGTTGGAAAAATTCTTGATGCTGACGCTTGGGGTCTATTTTATAGCCTTAAATTAGCTTCCCAGCTGCAACTTGATAATTTATGCATTGAATCCGATTATGCAGTGCTGGTCAAGCTTTTTCAATGTGCAGATTTAGATTCTTACCCTCTTGGTTCATTGATCAAAGGCTGTAAGAATTTCATGTCTTCCTTGGGAATTACTCATATTAGCCATATTTTCAGAGAATGTAATATGACTGCGGATGCCCCAGCGAAGAATAGTGTGCATCATGATCTAGGCCTGATTGTCTTTGATAACCCCCATGTTCATGCTGCTCATTCATTTCTTAATGATCTTGCTGTTATAACAAGAGTCAAGAGAGTCTCCTGCTCTAGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

169

Amino Acids

18.29

Weight (kDa)

7.68

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 8 - 128 2.9e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 1 cut(s) 365
AcsI RAATTY 2 cut(s) 135, 301
AgsI TTSAA 3 cut(s) 113, 215, 248
AluBI AGCT 5 cut(s) 19, 65, 182, 190, 241
AluI AGCT 5 cut(s) 19, 65, 182, 190, 241
Alw26I GTCTC 1 cut(s) 493
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 2 cut(s) 190, 437
ApoI RAATTY 2 cut(s) 135, 301
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 177, 424
BccI CCATC 1 cut(s) 23
BclI TGATCA 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 2 cut(s) 401, 498
BisI GCNGC 2 cut(s) 191, 438
BlsI GCNGC 2 cut(s) 192, 439
BmiI GGNNCC 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 3 cut(s) 133, 358, 400
BmuI ACTGGG 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 315
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 177, 424
BseYI CCCAGC 2 cut(s) 186, 373
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 1 cut(s) 405
BshNI GGYRCC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 493
BsnI GGCC 1 cut(s) 405
Bsp143I GATC 4 cut(s) 82, 285, 397, 457
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 405
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 4 cut(s) 82, 285, 397, 457
BssT1I CCWWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 10
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 4 cut(s) 85, 288, 400, 460
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 4 cut(s) 82, 285, 397, 457
BstMWI GCNNNNNNNGC 2 cut(s) 39, 238
BstV1I GCAGC 2 cut(s) 177, 424
BstV2I GAAGAC 1 cut(s) 303
BsuRI GGCC 1 cut(s) 405
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
CciI TCATGA 1 cut(s) 394
CseI GACGC 1 cut(s) 158
CviAII CATG 4 cut(s) 307, 395, 428, 434
CviJI RGCY 9 cut(s) 19, 65, 171, 182, 190, 241, 294, 336, 405
CviKI_1 RGCY 9 cut(s) 19, 65, 171, 182, 190, 241, 294, 336, 405
DpnI GATC 4 cut(s) 84, 287, 399, 459
DpnII GATC 4 cut(s) 82, 285, 397, 457
Eco130I CCWWGG 1 cut(s) 315
Eco147I AGGCCT 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 315
EcoT22I ATGCAT 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 4 cut(s) 310, 398, 431, 437
FatI CATG 4 cut(s) 306, 394, 427, 433
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 191, 438
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 191, 438
FspBI CTAG 2 cut(s) 401, 498
GluI GCNGC 2 cut(s) 191, 438
GsaI CCCAGC 2 cut(s) 190, 377
HaeIII GGCC 1 cut(s) 405
HgaI GACGC 1 cut(s) 158
Hin1II CATG 4 cut(s) 310, 398, 431, 437
HindIII AAGCTT 2 cut(s) 17, 239
HinfI GANTC 5 cut(s) 72, 215, 263, 477, 486
Hpy188I TCNGA 2 cut(s) 220, 347
Hpy188III TCNNGA 4 cut(s) 51, 140, 395, 481
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 5 cut(s) 193, 210, 227, 254, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 238
Hsp92II CATG 4 cut(s) 310, 398, 431, 437
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 4 cut(s) 82, 285, 397, 457
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 8 cut(s) 36, 49, 51, 82, 200, 218, 387, 419
Lsp1109I GCAGC 2 cut(s) 177, 424
LweI GCATC 3 cut(s) 133, 358, 400
MaeI CTAG 2 cut(s) 401, 498
MaeIII GTNAC 1 cut(s) 92
MalI GATC 4 cut(s) 84, 287, 399, 459
MboI GATC 4 cut(s) 82, 285, 397, 457
MboII GAAGA 2 cut(s) 303, 391
MluCI AATT 6 cut(s) 57, 135, 176, 202, 301, 321
MlyI GAGTC 3 cut(s) 81, 486, 495
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 2 cut(s) 58, 282
Mph1103I ATGCAT 1 cut(s) 212
MseI TTAA 4 cut(s) 15, 21, 174, 453
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 39, 238
NdeII GATC 4 cut(s) 82, 285, 397, 457
NlaIII CATG 4 cut(s) 310, 398, 431, 437
NlaIV GGNNCC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 212
PagI TCATGA 1 cut(s) 394
PceI AGGCCT 1 cut(s) 405
PfeI GAWTC 2 cut(s) 215, 263
PkrI GCNGC 2 cut(s) 192, 439
PleI GAGTC 3 cut(s) 80, 485, 494
PpsI GAGTC 3 cut(s) 80, 485, 494
PsiI TTATAA 1 cut(s) 470
PspFI CCCAGC 2 cut(s) 186, 373
PspN4I GGNNCC 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 4 cut(s) 15, 21, 174, 453
SatI GCNGC 2 cut(s) 191, 438
Sau3AI GATC 4 cut(s) 82, 285, 397, 457
SchI GAGTC 3 cut(s) 81, 486, 495
SetI ASST 5 cut(s) 21, 67, 184, 192, 243
SfaNI GCATC 3 cut(s) 133, 358, 400
SmiMI CAYNNNNRTG 1 cut(s) 432
Sse9I AATT 6 cut(s) 57, 135, 176, 202, 301, 321
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 1 cut(s) 365
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 401, 498
StuI AGGCCT 1 cut(s) 405
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 10
TasI AATT 6 cut(s) 57, 135, 176, 202, 301, 321
TfiI GAWTC 2 cut(s) 215, 263
Tru1I TTAA 4 cut(s) 15, 21, 174, 453
Tru9I TTAA 4 cut(s) 15, 21, 174, 453
TscAI CASTG 1 cut(s) 234
TseI GCWGC 2 cut(s) 190, 437
TspDTI ATGAA 4 cut(s) 270, 295, 422, 435
TspRI CASTG 1 cut(s) 234
XapI RAATTY 2 cut(s) 135, 301
XspI CTAG 2 cut(s) 401, 498
Zsp2I ATGCAT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.