Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

36464938 .. 36465734

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43751.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACGGTCAATATTACATCTGCAATCCAAGGACCATGCGATCTAAGAACCAGCTGGTTGCCTCCGATCCATCAACGCAGAGTGGTTGCCGTGGGATTCATGTGTGAGCCATACTATAAGGAAGAAGAATACGGACCCGCAGACATTAGATTGATCAAGAAGAAGAGGAAAGGAAGTGAGATTGGTGAATGGAGAGAGTCACTAGTATCATGCCCACGCGGCTTTATTTATTCGAAACTTGCTTCCCCTTTAGGCTTTGCTAGCAATGGAATGTTATACTGGAAGCGGAAATTCTGCTGTACCGGACGGCATAGCATACCGTACTGGAATGCTAGAAATGGTGATGTGATCGGGCTGGGACCTTTGTTGATCAACAACAAGAGCACTACCACATGCTCTAATAGTACTACTGGTAATGGTGATTCGGGATATCAATTTCATGTTATTAAACTTGTTGATAGGCAGGTACATGGAAATTTACGTTCTTCATTATATCACCTCCAGGCGCACCGTGGTCGTCTGCAGTTGGTGCAGACGGTGGGGAATGAGGACAGGCTTGGAGCTAGGCTATTTATTTGGGAGTTGAATAAAGAAGAACTAGAAGAAATGGCGGTACAAGGGGGTGGAGAACTGAGTCAGAAACACCGGAACATTTATCCGATAATGGACGCGGGTACCGTGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

229

Amino Acids

25.7

Weight (kDa)

9.25

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	674
AccII	CGCG	2 cut(s)	219, 671
AciI	CCGC	5 cut(s)	138, 219, 286, 611, 671
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	290, 475
AfaI	GTAC	6 cut(s)	301, 323, 406, 468, 615, 676
AgsI	TTSAA	1 cut(s)	586
AhlI	ACTAGT	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	54, 563
AluI	AGCT	2 cut(s)	54, 563
Alw21I	GWGCWC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	290, 475
Asp718I	GGTACC	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	3 cut(s)	32, 134, 359
AsuHPI	GGTGA	4 cut(s)	197, 353, 431, 488
AsuII	TTCGAA	1 cut(s)	233
AsuNHI	GCTAGC	1 cut(s)	260
AvaII	GGWCC	3 cut(s)	32, 134, 359
BaeI	ACNNNNGTAYC	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	674
Bbv12I	GWGCWC	1 cut(s)	386
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	2 cut(s)	74, 323
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	1 cut(s)	503
BclI	TGATCA	2 cut(s)	153, 369
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	5 cut(s)	203, 261, 333, 564, 599
BfmI	CTRYAG	1 cut(s)	521
BfuAI	ACCTGC	1 cut(s)	454
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	3 cut(s)	32, 134, 359
BmgT120I	GGNCC	3 cut(s)	32, 134, 359
BmiI	GGNNCC	3 cut(s)	136, 360, 676
BmrFI	CCNGG	1 cut(s)	503
BmtI	GCTAGC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	485
Bpu14I	TTCGAA	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	28, 90, 511
BsaWI	WCCGGW	2 cut(s)	302, 645
Bse1I	ACTGG	3 cut(s)	284, 329, 415
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	28, 90, 511
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	3 cut(s)	284, 329, 415
BseYI	CCCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	551
Bsh1236I	CGCG	2 cut(s)	219, 671
BshNI	GGYRCC	1 cut(s)	674
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	2 cut(s)	303, 646
BslFI	GGGAC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	334
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	5 cut(s)	40, 66, 153, 348, 369
BspACI	CCGC	5 cut(s)	138, 219, 286, 611, 671
BspCNI	CTCAG	1 cut(s)	624
BspFNI	CGCG	2 cut(s)	219, 671
BspLI	GGNNCC	3 cut(s)	136, 360, 676
BspMAI	CTGCAG	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	454
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	61
BspT104I	TTCGAA	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	284, 329, 415
BssECI	CCNNGG	3 cut(s)	28, 90, 511
BssMI	GATC	5 cut(s)	40, 66, 153, 348, 369
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	5 cut(s)	7, 321, 512, 538, 679
Bst6I	CTCTTC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	529
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	44, 632
BstDSI	CCRYGG	2 cut(s)	90, 511
BstFNI	CGCG	2 cut(s)	219, 671
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	5 cut(s)	43, 69, 156, 351, 372
BstMBI	GATC	5 cut(s)	40, 66, 153, 348, 369
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 261, 529
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	521
BstUI	CGCG	2 cut(s)	219, 671
BtgI	CCRYGG	2 cut(s)	90, 511
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	262
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	3 cut(s)	32, 134, 359
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	6 cut(s)	300, 322, 405, 467, 614, 675
CviAII	CATG	6 cut(s)	36, 100, 210, 393, 440, 470
CviJI	RGCY	8 cut(s)	54, 109, 222, 255, 355, 556, 563, 568
CviKI_1	RGCY	8 cut(s)	54, 109, 222, 255, 355, 556, 563, 568
CviQI	GTAC	6 cut(s)	300, 322, 405, 467, 614, 675
DdeI	CTNAG	2 cut(s)	44, 632
DpnI	GATC	5 cut(s)	42, 68, 155, 350, 371
DpnII	GATC	5 cut(s)	40, 66, 153, 348, 369
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	431
Eco47I	GGWCC	3 cut(s)	32, 134, 359
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	6 cut(s)	39, 103, 213, 396, 443, 473
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	6 cut(s)	35, 99, 209, 392, 439, 469
FauI	CCCGC	2 cut(s)	145, 664
FbaI	TGATCA	2 cut(s)	153, 369
Fnu4HI	GCNGC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	5 cut(s)	203, 261, 333, 564, 599
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	485
HapII	CCGG	2 cut(s)	303, 646
HgaI	GACGC	1 cut(s)	677
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	6 cut(s)	39, 103, 213, 396, 443, 473
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	4 cut(s)	96, 197, 422, 634
HpaII	CCGG	2 cut(s)	303, 646
HphI	GGTGA	4 cut(s)	197, 353, 431, 488
Hpy188I	TCNGA	3 cut(s)	66, 639, 660
Hpy188III	TCNNGA	2 cut(s)	157, 426
HpyCH4III	ACNGT	5 cut(s)	7, 321, 512, 538, 679
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	3 cut(s)	23, 523, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 261, 529
HpyF3I	CTNAG	2 cut(s)	44, 632
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	6 cut(s)	39, 103, 213, 396, 443, 473
HspAI	GCGC	1 cut(s)	506
KpnI	GGTACC	1 cut(s)	678
Ksp22I	TGATCA	2 cut(s)	153, 369
Kzo9I	GATC	5 cut(s)	40, 66, 153, 348, 369
LmnI	GCTCC	1 cut(s)	560
MaeI	CTAG	5 cut(s)	203, 261, 333, 564, 599
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	5 cut(s)	42, 68, 155, 350, 371
MboI	GATC	5 cut(s)	40, 66, 153, 348, 369
MboII	GAAGA	7 cut(s)	134, 137, 172, 175, 477, 605, 614
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	3 cut(s)	290, 434, 475
MlyI	GAGTC	2 cut(s)	206, 643
MnlI	CCTC	4 cut(s)	72, 159, 509, 541
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	2 cut(s)	303, 646
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	2 cut(s)	219, 671
MwoI	GCNNNNNNNGC	3 cut(s)	219, 261, 529
NdeII	GATC	5 cut(s)	40, 66, 153, 348, 369
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	6 cut(s)	39, 103, 213, 396, 443, 473
NlaIV	GGNNCC	3 cut(s)	136, 360, 676
NmuCI	GTSAC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	396
NspV	TTCGAA	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	96, 422
PkrI	GCNGC	1 cut(s)	221
PleI	GAGTC	2 cut(s)	205, 642
PpsI	GAGTC	2 cut(s)	205, 642
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	136, 360, 676
PspPI	GGNCC	3 cut(s)	32, 134, 359
PspPPI	RGGWCCY	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	525
PvuII	CAGCTG	1 cut(s)	54
RsaI	GTAC	6 cut(s)	301, 323, 406, 468, 615, 676
RsaNI	GTAC	6 cut(s)	300, 322, 405, 467, 614, 675
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	5 cut(s)	40, 66, 153, 348, 369
Sau96I	GGNCC	3 cut(s)	32, 134, 359
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	2 cut(s)	206, 643
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	6 cut(s)	56, 364, 468, 484, 501, 565
SfcI	CTRYAG	1 cut(s)	521
SfuI	TTCGAA	1 cut(s)	233
SinI	GGWCC	3 cut(s)	32, 134, 359
SpeI	ACTAGT	1 cut(s)	202
Sse9I	AATT	3 cut(s)	290, 434, 475
SsiI	CCGC	5 cut(s)	138, 219, 286, 611, 671
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	5 cut(s)	203, 261, 333, 564, 599
StyD4I	CCNGG	1 cut(s)	501
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	5 cut(s)	7, 321, 512, 538, 679
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	233
TasI	AATT	3 cut(s)	290, 434, 475
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	96, 422
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	3 cut(s)	88, 428, 477
TspGWI	ACGGA	1 cut(s)	147
VpaK11BI	GGWCC	3 cut(s)	32, 134, 359
XapI	RAATTY	2 cut(s)	290, 475
XceI	RCATGY	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XspI	CTAG	5 cut(s)	203, 261, 333, 564, 599
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.