RLG00000037001

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001837
Physical Location & Seq
Forward (+)
87422040 .. 87423668
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037001

Sequence Viewer

Length: 1629 bp
ATGAAGAGGTCAGCTGCGAAAAGATCATCGTCAACTAATATATATGATCTCCCGAAGGAATTATTAGTTGAAATCCTTTCTCGACTGCCTTGCGCAAAATCTGTCTGTCGATGTAAGTTTGTTTCAAAGAGTTGGTGGACTCTCATGTCAGATCCTTATTTTGTTGGCCGCTTTTTGTGGCTACAGAGAAATAACCAAACCCTAATACCTGGCACTATTATAAGTAATAAGGCCGAAGAACTTACCACAAACGACGTGCTGGCAAGATTAAGGAATTTCTTCAAACTCAAGAAGAAGAAATTACAAGTGCTAGCTACATGGAATGACTTGGTTCTCTGCTGCACAGTCAGCGGAGGCTATTGCTATTACTACGTCTGCAATCCACGGACCATGCAACTGGTTCATCTTCCTCGCATCGCTCAATACCCTGGTCTCCCTGACATATTCGACTCTCAGCCTCTGGGATTCATCTGTGAGCCCTACAATAAGGAAGACAGGGTCGTCGTCCACAGTGATCAACAACAAGAACAAAAAGAAGAAAGGAAGGTAATTAAAATTAATGCCGAGTACAAGTGTAAGGTTGTCAGAATTCTTCCTCCTGATGAGATAATAAAACCTTGTTTCGAATTCAAGATTCAAGTATTCTCTAGTGAGACTGGTGAATGGAGAGAATCACTAGTGGCATGTCCACAAGGCTTTATTTATAAACAACTCGGGGATGTATCTGTCTGTGCTACCAATGGCATGCTATATTGGAATAATGCTGACTATGGTGATCTGCTCGTGCTGGAACCGTTGATCAACAACAAGAGTACTACTACTACTGCCAATGATGATTCTGGCTATCAATTTCGTGTTATTAAATATGTTCAGGAAGATGATGTTCCTTATCCTCATCAGCCATTTTCGCCTTATCACCTTGGCGGGCAGCAGGGACGTCTGCTGTTGGTGCGTACAGTGGCGAATGGATTCCCCGACATGGGCGCTAGGCTATTCATTTGGGAGTTGGATCAAGAAAGGGGTGGAGAACTCTGTCGTCGGAGGACTTACAACATACTGGACAAAGAATTTCTTGGTTTAGAGACTGGGGTGTCTTGTATAGGTTTCGACCAAAATGATTTGGATATATGTTATGTGCTTGTATGTCATCACGAGGAACTAGAAGGCCTTCACAAGTACAACCTTCACACAGGGAAACGGTCCATGATAAACAAAGAATTTTATGGGTGCGCATTACAAGTTATGCTTCCGTGGTGGTCAGTTCCTACCATATCCGATCCCATGCTGGATAGGAATACCGAGATCAACGGGAGTGAGGAAGAAGGTGCCGCGCTCAGATATATAGCAAGATCAAAAGTGAAGACCAAAGATGTGGATGGTGTTGTGAAGGGTGCGGGTTTTCAAGCTCCAAGGTTGAGTGGTAGAAAGCACGGCATTGATGTGGAGAAGAGTGGTGCAACAAAGAGGTTCAAGGCGATGGATGTAGTAGTCCCAGCTAATGCTCCTAAGGAAGTGCATGCTTCAAATCCCACTTCGTCCAAGGTATCACGAGAAACCACCACACGAGAAATTCTTCATCATGCTTTTGGAAACATGCCAATATTCCTTAAAAATGCTTCAAGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

543

Amino Acids

61.65

Weight (kDa)

8.51

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 15 - 53 8.9e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 221, 705
AasI GACNNNNNNGTC 3 cut(s) 145, 500, 1090
AatII GACGTC 1 cut(s) 940
Acc16I TGCGCA 2 cut(s) 94, 1231
AccB1I GGYRCC 1 cut(s) 1325
AccII CGCG 1 cut(s) 1331
AciI CCGC 5 cut(s) 169, 351, 924, 1329, 1394
AclWI GGATC 3 cut(s) 146, 1017, 1271
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 6 cut(s) 274, 588, 626, 1067, 1217, 1569
AcyI GRCGYC 1 cut(s) 937
AfaI GTAC 4 cut(s) 569, 814, 955, 1178
AfiI CCNNNNNNNGG 2 cut(s) 979, 980
AgsI TTSAA 9 cut(s) 71, 126, 283, 631, 638, 1403, 1471, 1524, 1620
AhlI ACTAGT 1 cut(s) 676
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 2 cut(s) 208, 427
AluBI AGCT 4 cut(s) 14, 314, 1406, 1496
AluI AGCT 4 cut(s) 14, 314, 1406, 1496
Alw26I GTCTC 3 cut(s) 437, 647, 1076
AlwI GGATC 3 cut(s) 146, 1017, 1271
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 713
AoxI GGCC 3 cut(s) 166, 231, 1165
ApeKI GCWGC 3 cut(s) 14, 339, 928
ApoI RAATTY 6 cut(s) 274, 588, 626, 1067, 1217, 1569
AseI ATTAAT 1 cut(s) 558
Asp700I GAANNNNTTC 4 cut(s) 278, 968, 1167, 1572
AspLEI GCGC 4 cut(s) 95, 986, 1232, 1333
AspS9I GGNCC 2 cut(s) 387, 1200
AsuHPI GGTGA 3 cut(s) 671, 785, 908
AsuII TTCGAA 1 cut(s) 624
AsuNHI GCTAGC 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 713
AvaII GGWCC 2 cut(s) 387, 1200
AxyI CCTNAGG 1 cut(s) 1506
BanI GGYRCC 1 cut(s) 1325
BanII GRGCYC 1 cut(s) 480
BauI CACGAG 4 cut(s) 782, 1151, 1548, 1563
BbsI GAAGAC 2 cut(s) 498, 1367
BbvI GCAGC 2 cut(s) 326, 940
BccI CCATC 2 cut(s) 1370, 1471
BceAI ACGGC 1 cut(s) 1447
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 2 cut(s) 210, 429
BclI TGATCA 2 cut(s) 514, 798
BcoDI GTCTC 3 cut(s) 437, 647, 1076
BcuI ACTAGT 1 cut(s) 676
BfaI CTAG 5 cut(s) 311, 648, 677, 987, 1160
BfmI CTRYAG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 987
BisI GCNGC 5 cut(s) 15, 169, 340, 929, 1329
BlsI GCNGC 5 cut(s) 16, 170, 341, 930, 1330
BmcAI AGTACT 1 cut(s) 814
Bme1390I CCNGG 2 cut(s) 210, 429
Bme18I GGWCC 2 cut(s) 387, 1200
BmeT110I CYCGRG 1 cut(s) 713
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 387, 1200
BmiI GGNNCC 2 cut(s) 792, 1327
BmrFI CCNGG 2 cut(s) 210, 429
BmrI ACTGGG 1 cut(s) 1095
BmsI GCATC 1 cut(s) 423
BmtI GCTAGC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 1095
BpiI GAAGAC 2 cut(s) 498, 1367
Bpu14I TTCGAA 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 937
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 6 cut(s) 383, 427, 919, 1250, 1409, 1539
Bsc4I CCNNNNNNNGG 2 cut(s) 979, 980
Bse1I ACTGG 4 cut(s) 402, 661, 1062, 1090
Bse21I CCTNAGG 1 cut(s) 1506
BseBI CCWGG 2 cut(s) 210, 429
BseDI CCNNGG 6 cut(s) 383, 427, 919, 1250, 1409, 1539
BseGI GGATG 3 cut(s) 724, 1381, 1486
BseLI CCNNNNNNNGG 2 cut(s) 979, 980
BseMII CTCAG 2 cut(s) 467, 1348
BseNI ACTGG 4 cut(s) 402, 661, 1062, 1090
BseXI GCAGC 2 cut(s) 326, 940
BseYI CCCAGC 1 cut(s) 1492
BsgI GTGCAG 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 1331
BshFI GGCC 3 cut(s) 168, 233, 1167
BshNI GGYRCC 1 cut(s) 1325
BsiHKCI CYCGRG 1 cut(s) 713
BslFI GGGAC 2 cut(s) 948, 1475
BslI CCNNNNNNNGG 2 cut(s) 979, 980
BsmAI GTCTC 3 cut(s) 437, 647, 1076
BsmFI GGGAC 2 cut(s) 948, 1475
BsnI GGCC 3 cut(s) 168, 233, 1167
Bso31I GGTCTC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 713
Bsp119I TTCGAA 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 480
BspACI CCGC 5 cut(s) 169, 351, 924, 1329, 1394
BspANI GGCC 3 cut(s) 168, 233, 1167
BspCNI CTCAG 2 cut(s) 466, 1347
BspFNI CGCG 1 cut(s) 1331
BspLI GGNNCC 2 cut(s) 792, 1327
BspOI GCTAGC 1 cut(s) 314
BspPI GGATC 3 cut(s) 146, 1017, 1271
BspT104I TTCGAA 1 cut(s) 624
BspT107I GGYRCC 1 cut(s) 1325
BspTNI GGTCTC 1 cut(s) 437
BsrI ACTGG 4 cut(s) 402, 661, 1062, 1090
BssECI CCNNGG 6 cut(s) 383, 427, 919, 1250, 1409, 1539
BssNI GRCGYC 1 cut(s) 937
BssSI CACGAG 4 cut(s) 782, 1151, 1548, 1563
BssT1I CCWWGG 3 cut(s) 919, 1409, 1539
Bst2BI CACGAG 4 cut(s) 782, 1151, 1548, 1563
Bst2UI CCWGG 2 cut(s) 210, 429
Bst4CI ACNGT 5 cut(s) 346, 512, 795, 958, 1200
Bst6I CTCTTC 1 cut(s) 1442
BstACI GRCGYC 1 cut(s) 937
BstBI TTCGAA 1 cut(s) 624
BstC8I GCNNGC 5 cut(s) 261, 312, 746, 926, 1518
BstDEI CTNAG 3 cut(s) 453, 1334, 1506
BstDSI CCRYGG 2 cut(s) 383, 1250
BstF5I GGATG 3 cut(s) 724, 1381, 1486
BstFNI CGCG 1 cut(s) 1331
BstH2I RGCGCY 1 cut(s) 987
BstHHI GCGC 4 cut(s) 95, 986, 1232, 1333
BstMAI GTCTC 3 cut(s) 437, 647, 1076
BstMWI GCNNNNNNNGC 3 cut(s) 348, 907, 949
BstNI CCWGG 2 cut(s) 210, 429
BstNSI RCATGY 4 cut(s) 687, 748, 1520, 1597
BstSCI CCNGG 2 cut(s) 208, 427
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 1 cut(s) 1331
BstV1I GCAGC 2 cut(s) 326, 940
BstV2I GAAGAC 2 cut(s) 498, 1367
BstX2I RGATCY 1 cut(s) 151
BstXI CCANNNNNNTGG 2 cut(s) 397, 1372
BstYI RGATCY 1 cut(s) 151
Bsu36I CCTNAGG 1 cut(s) 1506
BsuRI GGCC 3 cut(s) 168, 233, 1167
BtgI CCRYGG 2 cut(s) 383, 1250
BtgZI GCGATG 2 cut(s) 400, 1490
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 3 cut(s) 724, 1381, 1486
BtsIMutI CAGTG 2 cut(s) 517, 963
Cac8I GCNNGC 5 cut(s) 261, 312, 746, 926, 1518
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 4 cut(s) 95, 986, 1232, 1333
Cfr13I GGNCC 2 cut(s) 387, 1200
Csp6I GTAC 4 cut(s) 568, 813, 954, 1177
CviQI GTAC 4 cut(s) 568, 813, 954, 1177
DdeI CTNAG 3 cut(s) 453, 1334, 1506
DrdI GACNNNNNNGTC 3 cut(s) 145, 500, 1090
DseDI GACNNNNNNGTC 3 cut(s) 145, 500, 1090
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 1442
EarI CTCTTC 1 cut(s) 1442
Eco130I CCWWGG 3 cut(s) 919, 1409, 1539
Eco147I AGGCCT 1 cut(s) 1167
Eco24I GRGCYC 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 2 cut(s) 387, 1200
Eco81I CCTNAGG 1 cut(s) 1506
Eco88I CYCGRG 1 cut(s) 713
EcoRI GAATTC 2 cut(s) 588, 626
EcoRII CCWGG 2 cut(s) 208, 427
EcoT14I CCWWGG 3 cut(s) 919, 1409, 1539
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 3 cut(s) 919, 1409, 1539
FalI AAGNNNNNCTT 4 cut(s) 1056, 1088, 1230, 1262
FaqI GGGAC 2 cut(s) 948, 1475
FauI CCCGC 2 cut(s) 917, 1387
FbaI TGATCA 2 cut(s) 514, 798
Fnu4HI GCNGC 5 cut(s) 15, 169, 340, 929, 1329
FokI GGATG 3 cut(s) 731, 1388, 1493
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 5 cut(s) 15, 169, 340, 929, 1329
FspAI RTGCGCAY 1 cut(s) 1231
FspBI CTAG 5 cut(s) 311, 648, 677, 987, 1160
FspI TGCGCA 2 cut(s) 94, 1231
GlaI GCGC 4 cut(s) 94, 985, 1231, 1332
GluI GCNGC 5 cut(s) 15, 169, 340, 929, 1329
GsaI CCCAGC 1 cut(s) 1496
HaeII RGCGCY 1 cut(s) 987
HaeIII GGCC 3 cut(s) 168, 233, 1167
HhaI GCGC 4 cut(s) 95, 986, 1232, 1333
Hin1I GRCGYC 1 cut(s) 937
Hin6I GCGC 4 cut(s) 93, 984, 1230, 1331
HinP1I GCGC 4 cut(s) 93, 984, 1230, 1331
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 7 cut(s) 139, 449, 465, 634, 671, 836, 969
HphI GGTGA 3 cut(s) 671, 785, 908
Hpy166II GTNNAC 4 cut(s) 33, 138, 508, 689
Hpy188I TCNGA 5 cut(s) 151, 587, 1041, 1276, 1337
Hpy188III TCNNGA 9 cut(s) 52, 81, 289, 599, 631, 872, 1013, 1151, 1548
Hpy8I GTNNAC 4 cut(s) 33, 138, 508, 689
Hpy99I CGWCG 3 cut(s) 257, 506, 1041
HpyAV CCTTC 7 cut(s) 49, 538, 1157, 1178, 1193, 1316, 1381
HpyCH4III ACNGT 5 cut(s) 346, 512, 795, 958, 1200
HpyCH4IV ACGT 3 cut(s) 255, 372, 937
HpyCH4V TGCA 5 cut(s) 342, 378, 394, 1457, 1516
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 907, 949
HpyF3I CTNAG 3 cut(s) 453, 1334, 1506
HpySE526I ACGT 3 cut(s) 255, 372, 937
Hsp92I GRCGYC 1 cut(s) 937
HspAI GCGC 4 cut(s) 93, 984, 1230, 1331
Ksp22I TGATCA 2 cut(s) 514, 798
LmnI GCTCC 2 cut(s) 1411, 1507
Lsp1109I GCAGC 2 cut(s) 326, 940
LweI GCATC 1 cut(s) 423
MaeI CTAG 5 cut(s) 311, 648, 677, 987, 1160
MaeII ACGT 3 cut(s) 255, 372, 937
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 480
MlyI GAGTC 2 cut(s) 133, 443
MmeI TCCRAC 2 cut(s) 987, 1019
MnlI CCTC 9 cut(s) 347, 420, 468, 606, 903, 1035, 1147, 1309, 1458
MroXI GAANNNNTTC 4 cut(s) 278, 968, 1167, 1572
MseI TTAA 5 cut(s) 269, 552, 558, 861, 1608
MslI CAYNNNNRTG 1 cut(s) 1439
MspA1I CMGCKG 2 cut(s) 14, 351
MspR9I CCNGG 2 cut(s) 210, 429
MvaI CCWGG 2 cut(s) 210, 429
MvnI CGCG 1 cut(s) 1331
MwoI GCNNNNNNNGC 3 cut(s) 348, 907, 949
NheI GCTAGC 1 cut(s) 310
NlaIV GGNNCC 2 cut(s) 792, 1327
NmeAIII GCCGAG 1 cut(s) 589
NsbI TGCGCA 2 cut(s) 94, 1231
NspI RCATGY 4 cut(s) 687, 748, 1520, 1597
NspV TTCGAA 1 cut(s) 624
PaeI GCATGC 2 cut(s) 748, 1520
PceI AGGCCT 1 cut(s) 1167
PdmI GAANNNNTTC 4 cut(s) 278, 968, 1167, 1572
PfeI GAWTC 5 cut(s) 465, 634, 671, 836, 969
PflFI GACNNNGTC 1 cut(s) 497
PkrI GCNGC 5 cut(s) 16, 170, 341, 930, 1330
PleI GAGTC 2 cut(s) 133, 443
PpsI GAGTC 2 cut(s) 133, 443
PshBI ATTAAT 1 cut(s) 558
PsiI TTATAA 2 cut(s) 221, 705
Psp6I CCWGG 2 cut(s) 208, 427
PspFI CCCAGC 1 cut(s) 1492
PspGI CCWGG 2 cut(s) 208, 427
PspN4I GGNNCC 2 cut(s) 792, 1327
PspPI GGNCC 2 cut(s) 387, 1200
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 497
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 4 cut(s) 569, 814, 955, 1178
RsaNI GTAC 4 cut(s) 568, 813, 954, 1177
RseI CAYNNNNRTG 1 cut(s) 1439
SaqAI TTAA 5 cut(s) 269, 552, 558, 861, 1608
SatI GCNGC 5 cut(s) 15, 169, 340, 929, 1329
Sau96I GGNCC 2 cut(s) 387, 1200
ScaI AGTACT 1 cut(s) 814
SchI GAGTC 2 cut(s) 133, 443
ScrFI CCNGG 2 cut(s) 210, 429
SduI GDGCHC 1 cut(s) 480
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 1 cut(s) 182
SfuI TTCGAA 1 cut(s) 624
SinI GGWCC 2 cut(s) 387, 1200
SmiMI CAYNNNNRTG 1 cut(s) 1439
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SpeI ACTAGT 1 cut(s) 676
SphI GCATGC 2 cut(s) 748, 1520
SseBI AGGCCT 1 cut(s) 1167
SsiI CCGC 5 cut(s) 169, 351, 924, 1329, 1394
SspI AATATT 1 cut(s) 1602
SspMI CTAG 5 cut(s) 311, 648, 677, 987, 1160
StuI AGGCCT 1 cut(s) 1167
StyD4I CCNGG 2 cut(s) 208, 427
StyI CCWWGG 3 cut(s) 919, 1409, 1539
TaaI ACNGT 5 cut(s) 346, 512, 795, 958, 1200
TaiI ACGT 3 cut(s) 258, 375, 940
TaqI TCGA 5 cut(s) 82, 109, 447, 624, 1107
TatI WGTACW 3 cut(s) 567, 812, 1176
TauI GCSGC 2 cut(s) 171, 1331
TfiI GAWTC 5 cut(s) 465, 634, 671, 836, 969
Tru1I TTAA 5 cut(s) 269, 552, 558, 861, 1608
Tru9I TTAA 5 cut(s) 269, 552, 558, 861, 1608
TscAI CASTG 2 cut(s) 517, 963
TseI GCWGC 3 cut(s) 14, 339, 928
TspDTI ATGAA 5 cut(s) 17, 392, 457, 985, 1565
TspGWI ACGGA 2 cut(s) 400, 1239
TspRI CASTG 2 cut(s) 517, 963
Tth111I GACNNNGTC 1 cut(s) 497
VpaK11BI GGWCC 2 cut(s) 387, 1200
VspI ATTAAT 1 cut(s) 558
XapI RAATTY 6 cut(s) 274, 588, 626, 1067, 1217, 1569
XceI RCATGY 4 cut(s) 687, 748, 1520, 1597
XmnI GAANNNNTTC 4 cut(s) 278, 968, 1167, 1572
XspI CTAG 5 cut(s) 311, 648, 677, 987, 1160
ZraI GACGTC 1 cut(s) 938
ZrmI AGTACT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.