Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008322.1

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

68673 .. 69686

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008322.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgctagctacatggaacgacttggttctctgtgaagatgacggtgattattacatctgcaatccaaggaccatgcaactggttagtcttcctccgatcaatcaaggccgttgcagttggggatataggcctgctgtgggattcatctgtgagccatactataaggaagaagaagacagacccgccgacaatagtgatcaaaaagaagaagaagaagaaaggaaggtaatcaaaattgatgccgagtataagtgcaaggttgtgagaattattcatcctgatgacaaggaaaaacttcgtttcgaatacaagattcaggtcttctctagtgagattggcgaggggcgagaatcactagtatcatgtccacgcggctttatttattctagactccagtccatatttggctttgctaccaatggaatgctatattggaatgctaggaatggtgatctgcttgggctgggacctttgatgatcaacaacaagagtactagtactactgccaatggtgattcggtctgtcaatttcatgttattaaacttgttcggcaggaacatcaagatgaagatttatattcttcattttactaccttcaggggcaccgtggacgtctgcagttggtgcagatgatggagaatgaggacccctctggagctagtctatcggtttgggagttgaaaaaagaagaactagaacaaatggcagtacaagggggtggagaactgggtcagaaacaccggaaaacttataatataatggataaagtatattatcatatacttacttcgctggagtatatgggttctgatccaaatgatttggatacatgttttgtgtctctaacagatcatgatcatagagaacctgtcatttacaagtgcaacattcacacaggagaatggtccaagatggagctcgaggaaacattttctgggcaagcattacaagttatgctcccatggtggcctacaccagttcctataatttctgtacgttcccatgccgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

337

Amino Acids

38.93

Weight (kDa)

5.03

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
AatII	GACGTC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	603
AccII	CGCG	1 cut(s)	372
AciI	CCGC	2 cut(s)	183, 372
AclWI	GGATC	1 cut(s)	806
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	613
AfaI	GTAC	4 cut(s)	493, 499, 711, 996
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	830
AgsI	TTSAA	1 cut(s)	682
AhlI	ACTAGT	2 cut(s)	355, 494
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	3 cut(s)	8, 659, 919
AluI	AGCT	3 cut(s)	8, 659, 919
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	1 cut(s)	846
AlwI	GGATC	1 cut(s)	806
Ama87I	CYCGRG	1 cut(s)	920
AoxI	GGCC	3 cut(s)	106, 128, 968
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	4 cut(s)	69, 467, 646, 906
AsuHPI	GGTGA	3 cut(s)	56, 461, 524
AsuII	TTCGAA	1 cut(s)	303
AsuNHI	GCTAGC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	920
AvaII	GGWCC	4 cut(s)	69, 467, 646, 906
BaeGI	GKGCMC	1 cut(s)	606
BanI	GGYRCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	921
BbsI	GAAGAC	3 cut(s)	80, 180, 313
Bbv12I	GWGCWC	1 cut(s)	921
BccI	CCATC	2 cut(s)	628, 907
BceAI	ACGGC	1 cut(s)	93
BciVI	GTATCC	1 cut(s)	820
BclI	TGATCA	3 cut(s)	196, 477, 856
BcoDI	GTCTC	1 cut(s)	846
BcuI	ACTAGT	2 cut(s)	355, 494
BfaI	CTAG	8 cut(s)	5, 327, 356, 387, 441, 495, 660, 695
BfmI	CTRYAG	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	820
BisI	GCNGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	374
BmcAI	AGTACT	2 cut(s)	493, 499
Bme18I	GGWCC	4 cut(s)	69, 467, 646, 906
BmeT110I	CYCGRG	1 cut(s)	920
BmgT120I	GGNCC	4 cut(s)	69, 467, 646, 906
BmiI	GGNNCC	3 cut(s)	468, 605, 648
BmrI	ACTGGG	1 cut(s)	737
BmsI	GCATC	1 cut(s)	229
BmtI	GCTAGC	1 cut(s)	8
BmuI	ACTGGG	1 cut(s)	737
BoxI	GACNNNNGTC	1 cut(s)	394
BpiI	GAAGAC	3 cut(s)	80, 180, 313
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BpmI	CTGGAG	3 cut(s)	377, 675, 815
Bpu14I	TTCGAA	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	613
BsaJI	CCNNGG	3 cut(s)	65, 607, 962
BsaWI	WCCGGW	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	4 cut(s)	84, 394, 732, 977
Bse8I	GATNNNNATC	1 cut(s)	855
BseDI	CCNNGG	3 cut(s)	65, 607, 962
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseNI	ACTGG	4 cut(s)	84, 394, 732, 977
BseSI	GKGCMC	1 cut(s)	606
BseYI	CCCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	3 cut(s)	108, 130, 970
BshNI	GGYRCC	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	921
BsiHKCI	CYCGRG	1 cut(s)	920
BsiSI	CCGG	1 cut(s)	742
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	846
BsmFI	GGGAC	1 cut(s)	480
BsmI	GAATGC	2 cut(s)	429, 442
BsnI	GGCC	3 cut(s)	108, 130, 970
BsoBI	CYCGRG	1 cut(s)	920
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	606, 921
Bsp143I	GATC	7 cut(s)	96, 196, 451, 477, 811, 850, 856
Bsp19I	CCATGG	1 cut(s)	962
BspACI	CCGC	2 cut(s)	183, 372
BspANI	GGCC	3 cut(s)	108, 130, 970
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	3 cut(s)	468, 605, 648
BspMAI	CTGCAG	1 cut(s)	621
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	806
BspT104I	TTCGAA	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	603
BsrI	ACTGG	4 cut(s)	84, 394, 732, 977
BssECI	CCNNGG	3 cut(s)	65, 607, 962
BssMI	GATC	7 cut(s)	96, 196, 451, 477, 811, 850, 856
BssNI	GRCGYC	1 cut(s)	613
BssT1I	CCWWGG	2 cut(s)	65, 962
Bst4CI	ACNGT	2 cut(s)	44, 608
BstACI	GRCGYC	1 cut(s)	613
BstAPI	GCANNNNNTGC	1 cut(s)	625
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	6, 132, 942
BstDSI	CCRYGG	2 cut(s)	607, 962
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	372
BstKTI	GATC	7 cut(s)	99, 199, 454, 480, 814, 853, 859
BstMAI	GTCTC	1 cut(s)	846
BstMBI	GATC	7 cut(s)	96, 196, 451, 477, 811, 850, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNSI	RCATGY	1 cut(s)	834
BstPAI	GACNNNNGTC	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	617
BstSLI	GKGCMC	1 cut(s)	606
BstUI	CGCG	1 cut(s)	372
BstV2I	GAAGAC	3 cut(s)	80, 180, 313
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	820
BsuRI	GGCC	3 cut(s)	108, 130, 970
BtgI	CCRYGG	2 cut(s)	607, 962
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	6, 132, 942
CciI	TCATGA	1 cut(s)	853
Cfr13I	GGNCC	4 cut(s)	69, 467, 646, 906
Csp6I	GTAC	4 cut(s)	492, 498, 710, 995
CviAII	CATG	8 cut(s)	12, 73, 363, 533, 831, 854, 963, 1004
CviQI	GTAC	4 cut(s)	492, 498, 710, 995
DpnI	GATC	7 cut(s)	98, 198, 453, 479, 813, 852, 858
DpnII	GATC	7 cut(s)	96, 196, 451, 477, 811, 850, 856
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	2 cut(s)	65, 962
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	921
Eco47I	GGWCC	4 cut(s)	69, 467, 646, 906
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	920
EcoICRI	GAGCTC	1 cut(s)	919
EcoO109I	RGGNCCY	2 cut(s)	467, 646
EcoT14I	CCWWGG	2 cut(s)	65, 962
EcoT38I	GRGCYC	1 cut(s)	921
ErhI	CCWWGG	2 cut(s)	65, 962
FaeI	CATG	8 cut(s)	15, 76, 366, 536, 834, 857, 966, 1007
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	8 cut(s)	11, 72, 362, 532, 830, 853, 962, 1003
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	3 cut(s)	196, 477, 856
Fnu4HI	GCNGC	1 cut(s)	373
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	1 cut(s)	373
FspBI	CTAG	8 cut(s)	5, 327, 356, 387, 441, 495, 660, 695
GluI	GCNGC	1 cut(s)	373
GsaI	CCCAGC	1 cut(s)	467
GsuI	CTGGAG	3 cut(s)	377, 675, 815
HaeIII	GGCC	3 cut(s)	108, 130, 970
HapII	CCGG	1 cut(s)	742
Hin1I	GRCGYC	1 cut(s)	613
Hin1II	CATG	8 cut(s)	15, 76, 366, 536, 834, 857, 966, 1007
HinfI	GANTC	5 cut(s)	141, 313, 350, 390, 515
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	3 cut(s)	56, 461, 524
Hpy166II	GTNNAC	2 cut(s)	368, 611
Hpy188I	TCNGA	3 cut(s)	96, 735, 811
Hpy188III	TCNNGA	5 cut(s)	278, 387, 563, 654, 854
Hpy8I	GTNNAC	2 cut(s)	368, 611
HpyAV	CCTTC	2 cut(s)	217, 605
HpyCH4III	ACNGT	2 cut(s)	44, 608
HpyCH4IV	ACGT	2 cut(s)	613, 997
HpyCH4V	TGCA	7 cut(s)	60, 76, 114, 255, 619, 628, 885
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpySE526I	ACGT	2 cut(s)	613, 997
Hsp92I	GRCGYC	1 cut(s)	613
Hsp92II	CATG	8 cut(s)	15, 76, 366, 536, 834, 857, 966, 1007
Ksp22I	TGATCA	3 cut(s)	196, 477, 856
Kzo9I	GATC	7 cut(s)	96, 196, 451, 477, 811, 850, 856
LmnI	GCTCC	3 cut(s)	656, 916, 963
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	8 cut(s)	5, 327, 356, 387, 441, 495, 660, 695
MaeII	ACGT	2 cut(s)	613, 997
MalI	GATC	7 cut(s)	98, 198, 453, 479, 813, 852, 858
MboI	GATC	7 cut(s)	96, 196, 451, 477, 811, 850, 856
MhlI	GDGCHC	2 cut(s)	606, 921
MluCI	AATT	4 cut(s)	234, 267, 527, 987
MlyI	GAGTC	1 cut(s)	384
MnlI	CCTC	5 cut(s)	102, 334, 637, 661, 916
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	279, 564
MspI	CCGG	1 cut(s)	742
Mva1269I	GAATGC	2 cut(s)	429, 442
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	625
NcoI	CCATGG	1 cut(s)	962
NdeII	GATC	7 cut(s)	96, 196, 451, 477, 811, 850, 856
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	8 cut(s)	15, 76, 366, 536, 834, 857, 966, 1007
NlaIV	GGNNCC	3 cut(s)	468, 605, 648
NmeAIII	GCCGAG	1 cut(s)	268
NspI	RCATGY	1 cut(s)	834
NspV	TTCGAA	1 cut(s)	303
PaeR7I	CTCGAG	1 cut(s)	920
PagI	TCATGA	1 cut(s)	853
PceI	AGGCCT	1 cut(s)	130
PciI	ACATGT	1 cut(s)	830
PctI	GAATGC	2 cut(s)	429, 442
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	4 cut(s)	141, 313, 350, 515
PkrI	GCNGC	1 cut(s)	374
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PpuMI	RGGWCCY	2 cut(s)	467, 646
PscI	ACATGT	1 cut(s)	830
PshAI	GACNNNNGTC	1 cut(s)	394
PsiI	TTATAA	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	921
Psp5II	RGGWCCY	2 cut(s)	467, 646
PspFI	CCCAGC	1 cut(s)	463
PspN4I	GGNNCC	3 cut(s)	468, 605, 648
PspPI	GGNCC	4 cut(s)	69, 467, 646, 906
PspPPI	RGGWCCY	2 cut(s)	467, 646
PspXI	VCTCGAGB	1 cut(s)	920
PstI	CTGCAG	1 cut(s)	621
RsaI	GTAC	4 cut(s)	493, 499, 711, 996
RsaNI	GTAC	4 cut(s)	492, 498, 710, 995
RseI	CAYNNNNRTG	2 cut(s)	279, 564
SacI	GAGCTC	1 cut(s)	921
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	7 cut(s)	96, 196, 451, 477, 811, 850, 856
Sau96I	GGNCC	4 cut(s)	69, 467, 646, 906
ScaI	AGTACT	2 cut(s)	493, 499
SchI	GAGTC	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	606, 921
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	617
Sfr274I	CTCGAG	1 cut(s)	920
SfuI	TTCGAA	1 cut(s)	303
SinI	GGWCC	4 cut(s)	69, 467, 646, 906
SlaI	CTCGAG	1 cut(s)	920
SmiMI	CAYNNNNRTG	2 cut(s)	279, 564
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
SpeI	ACTAGT	2 cut(s)	355, 494
Sse9I	AATT	4 cut(s)	234, 267, 527, 987
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	2 cut(s)	183, 372
SspMI	CTAG	8 cut(s)	5, 327, 356, 387, 441, 495, 660, 695
SstI	GAGCTC	1 cut(s)	921
StuI	AGGCCT	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	65, 962
TaaI	ACNGT	2 cut(s)	44, 608
TaiI	ACGT	2 cut(s)	616, 1000
TaqI	TCGA	2 cut(s)	303, 921
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	4 cut(s)	234, 267, 527, 987
TatI	WGTACW	3 cut(s)	491, 497, 709
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	4 cut(s)	141, 313, 350, 515
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TspDTI	ATGAA	5 cut(s)	133, 263, 521, 573, 582
VpaK11BI	GGWCC	4 cut(s)	69, 467, 646, 906
XbaI	TCTAGA	1 cut(s)	386
XceI	RCATGY	1 cut(s)	834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	920
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	8 cut(s)	5, 327, 356, 387, 441, 495, 660, 695
ZraI	GACGTC	1 cut(s)	614
ZrmI	AGTACT	2 cut(s)	493, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.