Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

89064649 .. 89065842

Gene Structure 1194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAAGAAATTAGAAGTGCTAGCTACATGGAATGACTTGGTTCTCTGCTGCACATTCAAACAGTCGTATCTGCATTACTACATCTGCAATCCAAGGACCATGCAACTGGTTCATCTTCCTCCGATCTTTCTATGGAGATGGGTCTATGAGGCTGCTGTGGGATTCATTTTTGAGCCCAAGGAAGAAGAAGACAGACCCGCCGCCGACGGTGATAAAAAAGAAGAAGAAAGGAAGGTGATTAAAATTCATGCCGAGTATAAGTGCAAGGTTGTGAGAATTCTTCCCCCTATTGACAGGGAAAAACTTTGTTTCGAATTCAAGATTCAGGTCTTCTCTAGTGAGATTGGTGAGTGGAGAGAATCAGTAGTATCATGTCCACGCGGCGTTATCTTTCGCCAACTTGTGTCCCAATTTGGCGTTGCTACCAATGGAATGCTATATTGGTGTGATTATAAGCATGGTGATCTGCTTGGGTTGGGACCGTTGATGATCAACAACAAGAGTACTATTGCTAATGGTGATTTTGGCTATCAGTTTCATGTTATTAAACTTGATCGGCAGCTTGATCTTCATTTTTCTTCATTTTATTACCTTCGTGGGCACCGAGGACGTTTGCAGTTGGTGCAGACGGTGGAGAATGAGCTCCTCATAGGCGCTAGGCTATTGGTTTGGGAGTTGGAAAAAGAAGAACTAGAACAAATGGCGGTACAAGGGGGTGGAGAACTGGGTCAGAAACACCAGAAAACTTATAATATACTGGACCAAGTAAAACTTACTGAGGTGAGGTATATAGGTTTTGATCCAAATGATTTGGATGTATGTTTTGTGTCAGCAGATGAATATGTAGCAGGTTATAACCTACCTGTCATTTACAAGTGCAACATTCACACAGGAGAATGGTCCAAGAGAGAAAATTTTTTTGATGGGCGCCCATTACAATTTATGCTCCCATGGAGGCCTACACCAGTTCCTACAATTTCTATTCCCATGCCGAATAGAAATATTGGGATAAATGAGAGTGAGGACCAGGTTGCTGCGCTGAGGGATAGAGCAACACCAAGAGTAGTGAAAAAGGTAAAGAAGACCAAAGATGGGAATGGTGTTGTGAATGGAGAGGAGGGTGTGGGTTTTCAAGCTTCAAGGTTAAGTGGTACAAAGCATGACACTGATGTGGTGAAGGGTGGTTCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

397

Amino Acids

45.57

Weight (kDa)

6.81

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	453, 750, 855
Acc36I	ACCTGC	1 cut(s)	839
AccB1I	GGYRCC	2 cut(s)	600, 927
AccII	CGCG	1 cut(s)	381
AciI	CCGC	4 cut(s)	198, 201, 381, 704
AclWI	GGATC	1 cut(s)	794
AcsI	RAATTY	4 cut(s)	243, 276, 314, 913
AcyI	GRCGYC	1 cut(s)	928
AfaI	GTAC	3 cut(s)	505, 708, 1153
AfiI	CCNNNNNNNGG	1 cut(s)	1092
AgsI	TTSAA	4 cut(s)	58, 319, 1133, 1140
AjnI	CCWGG	1 cut(s)	1026
AjuI	GAANNNNNNNTTGG	2 cut(s)	424, 456
AleI	CACNNNNGTG	1 cut(s)	1169
AluBI	AGCT	4 cut(s)	23, 562, 643, 1136
AluI	AGCT	4 cut(s)	23, 562, 643, 1136
Alw21I	GWGCWC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	794
AoxI	GGCC	1 cut(s)	956
ApeKI	GCWGC	4 cut(s)	48, 152, 559, 1034
ApoI	RAATTY	4 cut(s)	243, 276, 314, 913
AspLEI	GCGC	3 cut(s)	656, 930, 1039
AspS9I	GGNCC	5 cut(s)	96, 479, 760, 900, 1024
AsuHPI	GGTGA	7 cut(s)	221, 247, 359, 473, 530, 793, 1186
AsuII	TTCGAA	1 cut(s)	312
AsuNHI	GCTAGC	1 cut(s)	19
AvaII	GGWCC	5 cut(s)	96, 479, 760, 900, 1024
BaeGI	GKGCMC	1 cut(s)	603
BaeI	ACNNNNGTAYC	2 cut(s)	50, 83
BanI	GGYRCC	2 cut(s)	600, 927
BanII	GRGCYC	2 cut(s)	177, 645
BbsI	GAAGAC	3 cut(s)	195, 322, 1088
Bbv12I	GWGCWC	1 cut(s)	645
BbvCI	CCTCAGC	1 cut(s)	1040
BbvI	GCAGC	4 cut(s)	35, 139, 571, 1021
BccI	CCATC	3 cut(s)	132, 917, 1085
BciT130I	CCWGG	1 cut(s)	1028
BclI	TGATCA	1 cut(s)	489
BfaI	CTAG	4 cut(s)	20, 336, 657, 692
BfoI	RGCGCY	2 cut(s)	657, 931
BfuAI	ACCTGC	1 cut(s)	839
BisI	GCNGC	6 cut(s)	49, 153, 201, 382, 560, 1035
BlsI	GCNGC	6 cut(s)	50, 154, 202, 383, 561, 1036
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	1 cut(s)	1028
Bme18I	GGWCC	5 cut(s)	96, 479, 760, 900, 1024
BmgT120I	GGNCC	5 cut(s)	96, 479, 760, 900, 1024
BmiI	GGNNCC	3 cut(s)	480, 602, 929
BmrFI	CCNGG	1 cut(s)	1028
BmrI	ACTGGG	1 cut(s)	734
BmtI	GCTAGC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	734
BpiI	GAAGAC	3 cut(s)	195, 322, 1088
Bpu10I	CCTNAGC	1 cut(s)	1040
Bpu14I	TTCGAA	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	928
BsaJI	CCNNGG	4 cut(s)	92, 177, 604, 950
Bsc4I	CCNNNNNNNGG	1 cut(s)	1092
Bse1I	ACTGG	4 cut(s)	111, 729, 762, 965
BseBI	CCWGG	1 cut(s)	1028
BseDI	CCNNGG	4 cut(s)	92, 177, 604, 950
BseGI	GGATG	1 cut(s)	820
BseLI	CCNNNNNNNGG	1 cut(s)	1092
BseMII	CTCAG	2 cut(s)	768, 1031
BseNI	ACTGG	4 cut(s)	111, 729, 762, 965
BseRI	GAGGAG	2 cut(s)	635, 1130
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	4 cut(s)	35, 139, 571, 1021
BsgI	GTGCAG	2 cut(s)	34, 644
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	958
BshNI	GGYRCC	2 cut(s)	600, 927
BsiHKAI	GWGCWC	1 cut(s)	645
BslFI	GGGAC	2 cut(s)	391, 492
BslI	CCNNNNNNNGG	1 cut(s)	1092
BsmFI	GGGAC	2 cut(s)	391, 492
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	958
Bsp119I	TTCGAA	1 cut(s)	312
Bsp1286I	GDGCHC	3 cut(s)	177, 603, 645
Bsp143I	GATC	6 cut(s)	123, 463, 489, 553, 565, 799
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	4 cut(s)	198, 201, 381, 704
BspANI	GGCC	1 cut(s)	958
BspCNI	CTCAG	2 cut(s)	769, 1032
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	3 cut(s)	480, 602, 929
BspMI	ACCTGC	1 cut(s)	839
BspOI	GCTAGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	794
BspT104I	TTCGAA	1 cut(s)	312
BspT107I	GGYRCC	2 cut(s)	600, 927
BsrI	ACTGG	4 cut(s)	111, 729, 762, 965
BssECI	CCNNGG	4 cut(s)	92, 177, 604, 950
BssMI	GATC	6 cut(s)	123, 463, 489, 553, 565, 799
BssNI	GRCGYC	1 cut(s)	928
BssT1I	CCWWGG	3 cut(s)	92, 177, 950
Bst2UI	CCWGG	1 cut(s)	1028
Bst4CI	ACNGT	4 cut(s)	63, 209, 483, 631
BstACI	GRCGYC	1 cut(s)	928
BstAPI	GCANNNNNTGC	1 cut(s)	622
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	777, 1040
BstDSI	CCRYGG	1 cut(s)	950
BstF5I	GGATG	1 cut(s)	820
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	2 cut(s)	657, 931
BstHHI	GCGC	3 cut(s)	656, 930, 1039
BstKTI	GATC	6 cut(s)	126, 466, 492, 556, 568, 802
BstMBI	GATC	6 cut(s)	123, 463, 489, 553, 565, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	622
BstNI	CCWGG	1 cut(s)	1028
BstSCI	CCNGG	1 cut(s)	1026
BstSLI	GKGCMC	1 cut(s)	603
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	4 cut(s)	35, 139, 571, 1021
BstV2I	GAAGAC	3 cut(s)	195, 322, 1088
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	958
BtgI	CCRYGG	1 cut(s)	950
BtsCI	GGATG	1 cut(s)	820
BtsIMutI	CAGTG	1 cut(s)	1164
BveI	ACCTGC	1 cut(s)	839
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	3 cut(s)	656, 930, 1039
Cfr13I	GGNCC	5 cut(s)	96, 479, 760, 900, 1024
CsiI	ACCWGGT	1 cut(s)	1026
Csp6I	GTAC	3 cut(s)	504, 707, 1152
CviAII	CATG	9 cut(s)	27, 100, 248, 372, 458, 539, 951, 988, 1160
CviJI	RGCY	9 cut(s)	23, 152, 175, 528, 562, 643, 661, 958, 1136
CviKI_1	RGCY	9 cut(s)	23, 152, 175, 528, 562, 643, 661, 958, 1136
CviQI	GTAC	3 cut(s)	504, 707, 1152
DdeI	CTNAG	2 cut(s)	777, 1040
DinI	GGCGCC	1 cut(s)	929
DpnI	GATC	6 cut(s)	125, 465, 491, 555, 567, 801
DpnII	GATC	6 cut(s)	123, 463, 489, 553, 565, 799
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	3 cut(s)	92, 177, 950
Eco147I	AGGCCT	1 cut(s)	958
Eco24I	GRGCYC	2 cut(s)	177, 645
Eco47I	GGWCC	5 cut(s)	96, 479, 760, 900, 1024
Eco53kI	GAGCTC	1 cut(s)	643
EcoICRI	GAGCTC	1 cut(s)	643
EcoRI	GAATTC	2 cut(s)	276, 314
EcoRII	CCWGG	1 cut(s)	1026
EcoT14I	CCWWGG	3 cut(s)	92, 177, 950
EcoT38I	GRGCYC	2 cut(s)	177, 645
EgeI	GGCGCC	1 cut(s)	929
EheI	GGCGCC	1 cut(s)	929
ErhI	CCWWGG	3 cut(s)	92, 177, 950
FaeI	CATG	9 cut(s)	30, 103, 251, 375, 461, 542, 954, 991, 1163
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	2 cut(s)	391, 492
FatI	CATG	9 cut(s)	26, 99, 247, 371, 457, 538, 950, 987, 1159
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	6 cut(s)	49, 153, 201, 382, 560, 1035
FokI	GGATG	1 cut(s)	827
FriOI	GRGCYC	2 cut(s)	177, 645
Fsp4HI	GCNGC	6 cut(s)	49, 153, 201, 382, 560, 1035
FspBI	CTAG	4 cut(s)	20, 336, 657, 692
GlaI	GCGC	3 cut(s)	655, 929, 1038
GluI	GCNGC	6 cut(s)	49, 153, 201, 382, 560, 1035
HaeII	RGCGCY	2 cut(s)	657, 931
HaeIII	GGCC	1 cut(s)	958
HhaI	GCGC	3 cut(s)	656, 930, 1039
Hin1I	GRCGYC	1 cut(s)	928
Hin1II	CATG	9 cut(s)	30, 103, 251, 375, 461, 542, 954, 991, 1163
Hin6I	GCGC	3 cut(s)	654, 928, 1037
HinP1I	GCGC	3 cut(s)	654, 928, 1037
HindIII	AAGCTT	1 cut(s)	1134
HinfI	GANTC	3 cut(s)	162, 322, 359
HphI	GGTGA	7 cut(s)	221, 247, 359, 473, 530, 793, 1186
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	123, 732
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	226, 602, 1171
HpyCH4III	ACNGT	4 cut(s)	63, 209, 483, 631
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	8 cut(s)	51, 73, 87, 103, 264, 616, 625, 879
HpyF10VI	GCNNNNNNNGC	1 cut(s)	622
HpyF3I	CTNAG	2 cut(s)	777, 1040
HpySE526I	ACGT	1 cut(s)	610
Hsp92I	GRCGYC	1 cut(s)	928
Hsp92II	CATG	9 cut(s)	30, 103, 251, 375, 461, 542, 954, 991, 1163
HspAI	GCGC	3 cut(s)	654, 928, 1037
KasI	GGCGCC	1 cut(s)	927
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	123, 463, 489, 553, 565, 799
LmnI	GCTCC	2 cut(s)	648, 951
Lsp1109I	GCAGC	4 cut(s)	35, 139, 571, 1021
MabI	ACCWGGT	1 cut(s)	1026
MaeI	CTAG	4 cut(s)	20, 336, 657, 692
MaeII	ACGT	1 cut(s)	610
MalI	GATC	6 cut(s)	125, 465, 491, 555, 567, 801
MboI	GATC	6 cut(s)	123, 463, 489, 553, 565, 799
MhlI	GDGCHC	3 cut(s)	177, 603, 645
MluCI	AATT	8 cut(s)	8, 243, 276, 314, 410, 913, 938, 975
Mly113I	GGCGCC	1 cut(s)	928
MmeI	TCCRAC	1 cut(s)	657
MseI	TTAA	3 cut(s)	240, 546, 1145
MslI	CAYNNNNRTG	1 cut(s)	1169
MspR9I	CCNGG	1 cut(s)	1028
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	1028
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	622
NarI	GGCGCC	1 cut(s)	928
NcoI	CCATGG	1 cut(s)	950
NdeII	GATC	6 cut(s)	123, 463, 489, 553, 565, 799
NheI	GCTAGC	1 cut(s)	19
NlaIII	CATG	9 cut(s)	30, 103, 251, 375, 461, 542, 954, 991, 1163
NlaIV	GGNNCC	3 cut(s)	480, 602, 929
NmeAIII	GCCGAG	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	312
OliI	CACNNNNGTG	1 cut(s)	1169
PceI	AGGCCT	1 cut(s)	958
PcsI	WCGNNNNNNNCGW	1 cut(s)	601
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	3 cut(s)	162, 322, 359
PkrI	GCNGC	6 cut(s)	50, 154, 202, 383, 561, 1036
PluTI	GGCGCC	1 cut(s)	931
PsiI	TTATAA	3 cut(s)	453, 750, 855
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	1026
PspGI	CCWGG	1 cut(s)	1026
PspN4I	GGNNCC	3 cut(s)	480, 602, 929
PspPI	GGNCC	5 cut(s)	96, 479, 760, 900, 1024
RsaI	GTAC	3 cut(s)	505, 708, 1153
RsaNI	GTAC	3 cut(s)	504, 707, 1152
RseI	CAYNNNNRTG	1 cut(s)	1169
SacI	GAGCTC	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	240, 546, 1145
SatI	GCNGC	6 cut(s)	49, 153, 201, 382, 560, 1035
Sau3AI	GATC	6 cut(s)	123, 463, 489, 553, 565, 799
Sau96I	GGNCC	5 cut(s)	96, 479, 760, 900, 1024
ScaI	AGTACT	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	1028
SduI	GDGCHC	3 cut(s)	177, 603, 645
SexAI	ACCWGGT	1 cut(s)	1026
SfoI	GGCGCC	1 cut(s)	929
SfuI	TTCGAA	1 cut(s)	312
SinI	GGWCC	5 cut(s)	96, 479, 760, 900, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	1169
Sse9I	AATT	8 cut(s)	8, 243, 276, 314, 410, 913, 938, 975
SseBI	AGGCCT	1 cut(s)	958
SsiI	CCGC	4 cut(s)	198, 201, 381, 704
SspDI	GGCGCC	1 cut(s)	927
SspI	AATATT	1 cut(s)	1003
SspMI	CTAG	4 cut(s)	20, 336, 657, 692
SstI	GAGCTC	1 cut(s)	645
StuI	AGGCCT	1 cut(s)	958
StyD4I	CCNGG	1 cut(s)	1026
StyI	CCWWGG	3 cut(s)	92, 177, 950
TaaI	ACNGT	4 cut(s)	63, 209, 483, 631
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	312
TasI	AATT	8 cut(s)	8, 243, 276, 314, 410, 913, 938, 975
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	2 cut(s)	203, 384
TfiI	GAWTC	3 cut(s)	162, 322, 359
Tru1I	TTAA	3 cut(s)	240, 546, 1145
Tru9I	TTAA	3 cut(s)	240, 546, 1145
TscAI	CASTG	1 cut(s)	1171
TseI	GCWGC	4 cut(s)	48, 152, 559, 1034
TspDTI	ATGAA	8 cut(s)	17, 101, 154, 236, 527, 560, 570, 852
TspRI	CASTG	1 cut(s)	1171
VpaK11BI	GGWCC	5 cut(s)	96, 479, 760, 900, 1024
XapI	RAATTY	4 cut(s)	243, 276, 314, 913
XspI	CTAG	4 cut(s)	20, 336, 657, 692
ZrmI	AGTACT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.