Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

3065235 .. 3072570

Gene Structure 7336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG044400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAACTGGTTCATCTTCCTCGCATCGCTCAATACCCTGGTTTGCCTGATATATTCGACTCTCAGCCTGTGGGATTCATCTGTGAGCCCTACAATAAGGAAGCCAGGGTCGTCGTCCACAGTGATCAACAACAAGAACAAAAAGAAGAAAGGAAGGTAATTAAAATTAATGCCGAGTACAAGTGTAAGGTTGTCAGAATTCTTCCTCCTGATGAGATAAGAAAACCTTGTTTCGAATTCAAGATTCAGGTATTCTCTAGTGAGACTGGTGAATGGAGAGAATCACTAGTGTCATGTCCACAAGGCTTTATTTATTACCAACTCGGGGATGTATCTGTCTGTGCTACCAATGGCATGCTATATTGGAATAATGCTGACTATGGTGATCTGCTCGTGCTGGGACCGTTGATCAACAACAAGAGTACTACTACTACTGCCGATGGATGGTTGACTCAGAATGTAGCCACATTTGGAACCAACCCATCAAAGCTTGATGAGCAAGGATGTGTTCGTGTGCACCACCACGTAGCTAAAACTTTGAACTTACAACTTCATGATCTCAGTAAAAAGTTGCAATTAAGGCCAATATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

197

Amino Acids

22.47

Weight (kDa)

6.59

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	198, 236
AfaI	GTAC	2 cut(s)	179, 424
AfiI	CCNNNNNNNGG	2 cut(s)	325, 444
AgsI	TTSAA	2 cut(s)	241, 541
AhlI	ACTAGT	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	37, 104
AluBI	AGCT	2 cut(s)	490, 530
AluI	AGCT	2 cut(s)	490, 530
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	257
Alw44I	GTGCAC	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	581
ApaLI	GTGCAC	1 cut(s)	515
ApoI	RAATTY	2 cut(s)	198, 236
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	281, 395
AsuII	TTCGAA	1 cut(s)	234
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	519
BanII	GRGCYC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	519
BccI	CCATC	3 cut(s)	434, 438, 490
BciT130I	CCWGG	2 cut(s)	39, 106
BclI	TGATCA	2 cut(s)	124, 408
BcoDI	GTCTC	1 cut(s)	257
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	2 cut(s)	258, 287
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	39, 106
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	402, 475
BmrFI	CCNGG	2 cut(s)	39, 106
BmsI	GCATC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	37, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 444
Bse1I	ACTGG	2 cut(s)	12, 271
BseBI	CCWGG	2 cut(s)	39, 106
BseDI	CCNNGG	2 cut(s)	37, 105
BseGI	GGATG	3 cut(s)	334, 449, 509
BseLI	CCNNNNNNNGG	2 cut(s)	325, 444
BseMII	CTCAG	3 cut(s)	77, 467, 574
BseNI	ACTGG	2 cut(s)	12, 271
BseSI	GKGCMC	1 cut(s)	519
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	325, 444
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	583
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	90, 519
Bsp143I	GATC	4 cut(s)	124, 385, 408, 556
BspANI	GGCC	1 cut(s)	583
BspCNI	CTCAG	3 cut(s)	76, 466, 573
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	402, 475
BspT104I	TTCGAA	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	12, 271
BssECI	CCNNGG	2 cut(s)	37, 105
BssMI	GATC	4 cut(s)	124, 385, 408, 556
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	39, 106
Bst4CI	ACNGT	2 cut(s)	122, 405
BstBAI	YACGTR	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	3 cut(s)	63, 453, 560
BstF5I	GGATG	3 cut(s)	334, 449, 509
BstKTI	GATC	4 cut(s)	127, 388, 411, 559
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	4 cut(s)	124, 385, 408, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	496, 580
BstNI	CCWGG	2 cut(s)	39, 106
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	37, 104
BstSLI	GKGCMC	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	583
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	334, 449, 509
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	356
CciI	TCATGA	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	178, 423
CviAII	CATG	3 cut(s)	294, 355, 554
CviJI	RGCY	8 cut(s)	67, 88, 104, 306, 464, 490, 530, 583
CviKI_1	RGCY	8 cut(s)	67, 88, 104, 306, 464, 490, 530, 583
CviQI	GTAC	2 cut(s)	178, 423
DdeI	CTNAG	3 cut(s)	63, 453, 560
DpnI	GATC	4 cut(s)	126, 387, 410, 558
DpnII	GATC	4 cut(s)	124, 385, 408, 556
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	323
EcoRI	GAATTC	2 cut(s)	198, 236
EcoRII	CCWGG	2 cut(s)	37, 104
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	3 cut(s)	297, 358, 557
FaiI	YATR	6 cut(s)	53, 295, 356, 361, 381, 555
FalI	AAGNNNNNCTT	2 cut(s)	211, 243
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	3 cut(s)	293, 354, 553
FbaI	TGATCA	2 cut(s)	124, 408
FokI	GGATG	3 cut(s)	341, 456, 516
FriOI	GRGCYC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	258, 287
GsaI	CCCAGC	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	583
Hin1II	CATG	3 cut(s)	297, 358, 557
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	5 cut(s)	59, 75, 244, 281, 451
HphI	GGTGA	2 cut(s)	281, 395
Hpy166II	GTNNAC	4 cut(s)	118, 299, 450, 517
Hpy188I	TCNGA	3 cut(s)	197, 456, 593
Hpy188III	TCNNGA	3 cut(s)	209, 241, 554
Hpy8I	GTNNAC	4 cut(s)	118, 299, 450, 517
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	122, 405
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	3 cut(s)	4, 517, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	496, 580
HpyF3I	CTNAG	3 cut(s)	63, 453, 560
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	3 cut(s)	297, 358, 557
Ksp22I	TGATCA	2 cut(s)	124, 408
Kzo9I	GATC	4 cut(s)	124, 385, 408, 556
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	2 cut(s)	258, 287
MaeII	ACGT	1 cut(s)	525
MalI	GATC	4 cut(s)	126, 387, 410, 558
MboI	GATC	4 cut(s)	124, 385, 408, 556
MboII	GAAGA	3 cut(s)	8, 158, 194
MhlI	GDGCHC	2 cut(s)	90, 519
MluCI	AATT	5 cut(s)	159, 165, 198, 236, 575
MlyI	GAGTC	2 cut(s)	53, 445
MnlI	CCTC	2 cut(s)	30, 216
MseI	TTAA	3 cut(s)	162, 168, 578
MspR9I	CCNGG	2 cut(s)	39, 106
MvaI	CCWGG	2 cut(s)	39, 106
MwoI	GCNNNNNNNGC	2 cut(s)	496, 580
NdeII	GATC	4 cut(s)	124, 385, 408, 556
NlaIII	CATG	3 cut(s)	297, 358, 557
NlaIV	GGNNCC	2 cut(s)	402, 475
NmeAIII	GCCGAG	1 cut(s)	199
NspI	RCATGY	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	234
PaeI	GCATGC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	553
PfeI	GAWTC	3 cut(s)	75, 244, 281
PleI	GAGTC	2 cut(s)	53, 445
PpsI	GAGTC	2 cut(s)	53, 445
Ppu21I	YACGTR	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	37, 104
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	2 cut(s)	37, 104
PspN4I	GGNNCC	2 cut(s)	402, 475
PspPI	GGNCC	1 cut(s)	401
RsaI	GTAC	2 cut(s)	179, 424
RsaNI	GTAC	2 cut(s)	178, 423
SaqAI	TTAA	3 cut(s)	162, 168, 578
Sau3AI	GATC	4 cut(s)	124, 385, 408, 556
Sau96I	GGNCC	1 cut(s)	401
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	2 cut(s)	53, 445
ScrFI	CCNGG	2 cut(s)	39, 106
SduI	GDGCHC	2 cut(s)	90, 519
SetI	ASST	7 cut(s)	159, 192, 229, 252, 492, 528, 532
SfaNI	GCATC	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	234
SinI	GGWCC	1 cut(s)	401
SpeI	ACTAGT	1 cut(s)	286
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	5 cut(s)	159, 165, 198, 236, 575
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	2 cut(s)	258, 287
StyD4I	CCNGG	2 cut(s)	37, 104
TaaI	ACNGT	2 cut(s)	122, 405
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	2 cut(s)	57, 234
TasI	AATT	5 cut(s)	159, 165, 198, 236, 575
TatI	WGTACW	2 cut(s)	177, 422
TfiI	GAWTC	3 cut(s)	75, 244, 281
Tru1I	TTAA	3 cut(s)	162, 168, 578
Tru9I	TTAA	3 cut(s)	162, 168, 578
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	67, 542
TspRI	CASTG	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	401
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	2 cut(s)	198, 236
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	2 cut(s)	258, 287
ZrmI	AGTACT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.