Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Forward (+)

3175899 .. 3177096

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCTATATTGGTGTGATTATAAGCGTGGTGATCTGCTTGGGTTGGGACCGTTGATGATCAACAACAAGAGTACTACTGCTAATGGTGATTTTGGCTATCAATTTCATGTTATTAAACTTGATCAGCAGCTTGATCTTCATTTTTCTTCATTTTATTACCTTCGTGGGCACCGAGGACGTCTGCAGTTGGTGCAGACGGTGGAGAATGAGCTCCTCATAGGCGCTAGGCTATTGGTTTGGGAGTTGGAAAAAGAAGAACTAGAACAAATCGCGGTACAAGGGGGTGGAGAACTGGGTCAGAAACACTGGAAAACTTATAATATACTGGATCAAGTAATACTTACTAAGGTGAGGTATGTAGGTTTTGATCCAAATGATTTGGATATATGTTTTGTGTCTGTAGCAGATGAATATGATAACCTACCTGTCATTTACAAGTGCAACATTCACACAGGAGAATGGTCCAAGACAGAAAAAAGTTTTGATGGCCGCCCATTACAATTTATGCTCCCATGGCGGCCTACACCAGTTCCTACAATTTCTATTCCCATGCCGAATAGAAATATTGGGATCAATGGGAGTGAGGACGAGGTTGCTGCGCTGAGGGATAGAGCAACACCAAGAGTAGTGAAAAAGGTAAAGAAGACCAAAGATGGGAATGGTGTTGTGAATGGAGAGGAGGGTGTGGGTTTTCAAGCTTCAAGGTTAAGTGGTAGAAAGCATGACACTGATGTGGTGAAGGGTGGTTCGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

251

Amino Acids

28.38

Weight (kDa)

6.6

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	21, 318
AatII	GACGTC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	168
AccII	CGCG	1 cut(s)	272
AciI	CCGC	3 cut(s)	272, 490, 517
AclWI	GGATC	3 cut(s)	336, 362, 578
AcoI	YGGCCR	1 cut(s)	487
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	2 cut(s)	73, 276
AfiI	CCNNNNNNNGG	1 cut(s)	654
AgsI	TTSAA	2 cut(s)	695, 702
AleI	CACNNNNGTG	1 cut(s)	731
AluBI	AGCT	3 cut(s)	130, 211, 698
AluI	AGCT	3 cut(s)	130, 211, 698
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	3 cut(s)	336, 362, 578
AoxI	GGCC	2 cut(s)	487, 518
ApeKI	GCWGC	2 cut(s)	127, 596
AspLEI	GCGC	2 cut(s)	224, 601
AspS9I	GGNCC	2 cut(s)	47, 462
AsuHPI	GGTGA	4 cut(s)	41, 98, 361, 748
AvaII	GGWCC	2 cut(s)	47, 462
BaeGI	GKGCMC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	650
Bbv12I	GWGCWC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	139, 583
BccI	CCATC	2 cut(s)	479, 647
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BclI	TGATCA	2 cut(s)	57, 121
BfaI	CTAG	2 cut(s)	225, 260
BfmI	CTRYAG	2 cut(s)	182, 399
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	4 cut(s)	128, 490, 518, 597
BlsI	GCNGC	4 cut(s)	129, 491, 519, 598
BmcAI	AGTACT	1 cut(s)	73
Bme18I	GGWCC	2 cut(s)	47, 462
BmgT120I	GGNCC	2 cut(s)	47, 462
BmiI	GGNNCC	2 cut(s)	48, 170
BmrI	ACTGGG	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	650
Bpu10I	CCTNAGC	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	172, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	4 cut(s)	297, 311, 330, 527
BseDI	CCNNGG	2 cut(s)	172, 512
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	4 cut(s)	297, 311, 330, 527
BseRI	GAGGAG	2 cut(s)	203, 692
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	139, 583
BsgI	GTGCAG	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	489, 520
BshNI	GGYRCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	489, 520
Bsp1286I	GDGCHC	2 cut(s)	171, 213
Bsp143I	GATC	7 cut(s)	31, 57, 121, 133, 328, 367, 570
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	3 cut(s)	272, 490, 517
BspANI	GGCC	2 cut(s)	489, 520
BspCNI	CTCAG	1 cut(s)	594
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	48, 170
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	3 cut(s)	336, 362, 578
BspT107I	GGYRCC	1 cut(s)	168
BsrI	ACTGG	4 cut(s)	297, 311, 330, 527
BssECI	CCNNGG	2 cut(s)	172, 512
BssMI	GATC	7 cut(s)	31, 57, 121, 133, 328, 367, 570
BssNI	GRCGYC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	51, 199
BstACI	GRCGYC	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	345, 602
BstDSI	CCRYGG	1 cut(s)	512
BstFNI	CGCG	1 cut(s)	272
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	224, 601
BstKTI	GATC	7 cut(s)	34, 60, 124, 136, 331, 370, 573
BstMBI	GATC	7 cut(s)	31, 57, 121, 133, 328, 367, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 514
BstSFI	CTRYAG	2 cut(s)	182, 399
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	139, 583
BstV2I	GAAGAC	1 cut(s)	650
BsuRI	GGCC	2 cut(s)	489, 520
BtgI	CCRYGG	1 cut(s)	512
BtsIMutI	CAGTG	2 cut(s)	304, 726
CfoI	GCGC	2 cut(s)	224, 601
Cfr13I	GGNCC	2 cut(s)	47, 462
Csp6I	GTAC	2 cut(s)	72, 275
CviAII	CATG	4 cut(s)	107, 513, 550, 722
CviJI	RGCY	7 cut(s)	96, 130, 211, 229, 489, 520, 698
CviKI_1	RGCY	7 cut(s)	96, 130, 211, 229, 489, 520, 698
CviQI	GTAC	2 cut(s)	72, 275
DdeI	CTNAG	2 cut(s)	345, 602
DpnI	GATC	7 cut(s)	33, 59, 123, 135, 330, 369, 572
DpnII	GATC	7 cut(s)	31, 57, 121, 133, 328, 367, 570
EaeI	YGGCCR	1 cut(s)	487
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	47, 462
Eco53kI	GAGCTC	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	4 cut(s)	110, 516, 553, 725
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	106, 512, 549, 721
FbaI	TGATCA	2 cut(s)	57, 121
Fnu4HI	GCNGC	4 cut(s)	128, 490, 518, 597
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	4 cut(s)	128, 490, 518, 597
FspBI	CTAG	2 cut(s)	225, 260
GlaI	GCGC	2 cut(s)	223, 600
GluI	GCNGC	4 cut(s)	128, 490, 518, 597
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	489, 520
HhaI	GCGC	2 cut(s)	224, 601
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	4 cut(s)	110, 516, 553, 725
Hin6I	GCGC	2 cut(s)	222, 599
HinP1I	GCGC	2 cut(s)	222, 599
HindIII	AAGCTT	1 cut(s)	696
HphI	GGTGA	4 cut(s)	41, 98, 361, 748
Hpy188I	TCNGA	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	170, 733
HpyCH4III	ACNGT	2 cut(s)	51, 199
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	184, 193, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 514
HpyF3I	CTNAG	2 cut(s)	345, 602
HpySE526I	ACGT	1 cut(s)	178
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	4 cut(s)	110, 516, 553, 725
HspAI	GCGC	2 cut(s)	222, 599
Ksp22I	TGATCA	2 cut(s)	57, 121
Kzo9I	GATC	7 cut(s)	31, 57, 121, 133, 328, 367, 570
LmnI	GCTCC	2 cut(s)	216, 513
LpnPI	CCDG	6 cut(s)	278, 292, 311, 438, 438, 540
Lsp1109I	GCAGC	2 cut(s)	139, 583
MaeI	CTAG	2 cut(s)	225, 260
MaeII	ACGT	1 cut(s)	178
MalI	GATC	7 cut(s)	33, 59, 123, 135, 330, 369, 572
MboI	GATC	7 cut(s)	31, 57, 121, 133, 328, 367, 570
MboII	GAAGA	4 cut(s)	128, 138, 266, 655
MhlI	GDGCHC	2 cut(s)	171, 213
MluCI	AATT	3 cut(s)	101, 500, 537
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	8 cut(s)	167, 224, 345, 577, 583, 597, 670, 673
MseI	TTAA	2 cut(s)	114, 707
MslI	CAYNNNNRTG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	190, 514
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	7 cut(s)	31, 57, 121, 133, 328, 367, 570
NlaIII	CATG	4 cut(s)	110, 516, 553, 725
NlaIV	GGNNCC	2 cut(s)	48, 170
OliI	CACNNNNGTG	1 cut(s)	731
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PkrI	GCNGC	4 cut(s)	129, 491, 519, 598
PsiI	TTATAA	2 cut(s)	21, 318
Psp124BI	GAGCTC	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	48, 170
PspPI	GGNCC	2 cut(s)	47, 462
PstI	CTGCAG	1 cut(s)	186
RsaI	GTAC	2 cut(s)	73, 276
RsaNI	GTAC	2 cut(s)	72, 275
RseI	CAYNNNNRTG	1 cut(s)	731
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	114, 707
SatI	GCNGC	4 cut(s)	128, 490, 518, 597
Sau3AI	GATC	7 cut(s)	31, 57, 121, 133, 328, 367, 570
Sau96I	GGNCC	2 cut(s)	47, 462
ScaI	AGTACT	1 cut(s)	73
SduI	GDGCHC	2 cut(s)	171, 213
SfcI	CTRYAG	2 cut(s)	182, 399
SinI	GGWCC	2 cut(s)	47, 462
SmiMI	CAYNNNNRTG	1 cut(s)	731
Sse9I	AATT	3 cut(s)	101, 500, 537
SsiI	CCGC	3 cut(s)	272, 490, 517
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	2 cut(s)	225, 260
SstI	GAGCTC	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	2 cut(s)	51, 199
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	749
TasI	AATT	3 cut(s)	101, 500, 537
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	2 cut(s)	492, 520
Tru1I	TTAA	2 cut(s)	114, 707
Tru9I	TTAA	2 cut(s)	114, 707
TscAI	CASTG	2 cut(s)	311, 733
TseI	GCWGC	2 cut(s)	127, 596
TspDTI	ATGAA	4 cut(s)	95, 128, 138, 423
TspRI	CASTG	2 cut(s)	311, 733
VpaK11BI	GGWCC	2 cut(s)	47, 462
XspI	CTAG	2 cut(s)	225, 260
ZraI	GACGTC	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.