Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Forward (+)

27172367 .. 27182573

Gene Structure 10207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1181000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATCCAGCTTAATGCGAATTATAGGTGCAGGGTTGTGAGATTAATGGATCCTGATGATGCCGATGACGAGGACAAGGACATAATATATTTCAGCAACTTCAAACTCATCGACATGAGAGATTTCTGCACGTTCAAAGTGCAGATCTTCTCTTCTGAGACTGGTGAATGGAAGGAGACAACTGTAAGATCCGAGAGAACTGTAACATCCGCGTACAACTTTACTTTGGAAATGATGAGTGTCTGTACTGGCGTTGCTTCCAAACTAATGCTGTATTGGATGGGCGATGATGATGTCATTCTTATTCAGTTGGATCCGTTCATGATCGACAAGAGTGCTAGTGCTACTTTATCTACCTGTTATAGACACCGTATCAGGAATGAGTGGGACGCTCTTCCAATGAGGTGCATAGCAGCGTATGATGGGGGTGTGCGGATGTGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

149

Amino Acids

17.21

Weight (kDa)

4.75

Isoelectric Point (pI)

18.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	2 cut(s)	210, 433
AclWI	GGATC	5 cut(s)	44, 57, 183, 308, 321
AfaI	GTAC	2 cut(s)	215, 247
AgsI	TTSAA	2 cut(s)	103, 136
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	152, 170
AlwI	GGATC	5 cut(s)	44, 57, 183, 308, 321
ApeKI	GCWGC	1 cut(s)	413
AseI	ATTAAT	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	176
BamHI	GGATCC	2 cut(s)	49, 313
BbvI	GCAGC	1 cut(s)	425
BccI	CCATC	2 cut(s)	274, 416
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BcoDI	GTCTC	2 cut(s)	152, 170
BfaI	CTAG	2 cut(s)	339, 445
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	51, 315
BmsI	GCATC	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	166, 253
BseGI	GGATG	3 cut(s)	206, 285, 441
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	166, 253
BseXI	GCAGC	1 cut(s)	425
BsgI	GTGCAG	3 cut(s)	49, 112, 161
Bsh1236I	CGCG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	2 cut(s)	152, 170
BsmFI	GGGAC	1 cut(s)	401
Bsp143I	GATC	6 cut(s)	3, 49, 144, 188, 313, 324
BspACI	CCGC	2 cut(s)	210, 433
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	51, 315
BspPI	GGATC	5 cut(s)	44, 57, 183, 308, 321
BspQI	GCTCTTC	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	166, 253
BssMI	GATC	6 cut(s)	3, 49, 144, 188, 313, 324
Bst4CI	ACNGT	3 cut(s)	184, 202, 371
Bst6I	CTCTTC	2 cut(s)	157, 399
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	206, 285, 441
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	6 cut(s)	6, 52, 147, 191, 316, 327
BstMAI	GTCTC	2 cut(s)	152, 170
BstMBI	GATC	6 cut(s)	3, 49, 144, 188, 313, 324
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	425
BstX2I	RGATCY	4 cut(s)	49, 144, 188, 313
BstYI	RGATCY	4 cut(s)	49, 144, 188, 313
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	206, 285, 441
CciI	TCATGA	1 cut(s)	321
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	214, 246
CviAII	CATG	2 cut(s)	115, 322
CviJI	RGCY	1 cut(s)	10
CviKI_1	RGCY	1 cut(s)	10
CviQI	GTAC	2 cut(s)	214, 246
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	6 cut(s)	5, 51, 146, 190, 315, 326
DpnII	GATC	6 cut(s)	3, 49, 144, 188, 313, 324
Eam1104I	CTCTTC	2 cut(s)	157, 399
EarI	CTCTTC	2 cut(s)	157, 399
FaeI	CATG	2 cut(s)	118, 325
FaiI	YATR	8 cut(s)	24, 83, 88, 116, 323, 363, 410, 420
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	2 cut(s)	114, 321
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	2 cut(s)	193, 292
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	339, 445
GluI	GCNGC	1 cut(s)	414
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	2 cut(s)	118, 325
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	157, 193
Hpy188III	TCNNGA	3 cut(s)	53, 322, 376
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	3 cut(s)	184, 202, 371
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	5 cut(s)	30, 129, 142, 408, 441
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	118, 325
Kzo9I	GATC	6 cut(s)	3, 49, 144, 188, 313, 324
LguI	GCTCTTC	1 cut(s)	399
LpnPI	CCDG	7 cut(s)	16, 20, 66, 147, 234, 361, 370
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	339, 445
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	6 cut(s)	5, 51, 146, 190, 315, 326
MboI	GATC	6 cut(s)	3, 49, 144, 188, 313, 324
MboII	GAAGA	3 cut(s)	139, 144, 386
MflI	RGATCY	4 cut(s)	49, 144, 188, 313
MluCI	AATT	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	2 cut(s)	64, 396
MseI	TTAA	2 cut(s)	12, 44
MslI	CAYNNNNRTG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	212
NdeII	GATC	6 cut(s)	3, 49, 144, 188, 313, 324
NlaIII	CATG	2 cut(s)	118, 325
NlaIV	GGNNCC	2 cut(s)	51, 315
PagI	TCATGA	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	51, 315
PsuI	RGATCY	4 cut(s)	49, 144, 188, 313
RsaI	GTAC	2 cut(s)	215, 247
RsaNI	GTAC	2 cut(s)	214, 246
RseI	CAYNNNNRTG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	12, 44
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	6 cut(s)	3, 49, 144, 188, 313, 324
SetI	ASST	5 cut(s)	12, 29, 134, 359, 407
SfaNI	GCATC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	2 cut(s)	210, 433
SspMI	CTAG	2 cut(s)	339, 445
TaaI	ACNGT	3 cut(s)	184, 202, 371
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	111, 327
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	12, 44
Tru9I	TTAA	2 cut(s)	12, 44
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	1 cut(s)	306
VspI	ATTAAT	1 cut(s)	44
XspI	CTAG	2 cut(s)	339, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.