Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Forward (+)

89171143 .. 89172517

Gene Structure 1375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGTTGGCAAGATTAAGGAGTTTCTTCAAACTCAAGAAGAAGAAATTACAAGTGCTAGCTACATGGAATGACTTGGTTCTCTGCTGCACAGTCAGCGGAGGCTATTGCTATTACTACGTCTGCAATCCACGGACCATGCAACTGGTTCATCTTCCTCGCATAGCTCAATACCCTGGTTTCCCTGATATATTCGACTCTCAGCCTGTGGGATTCATCTGTGAGCCCTACAATAAGGAAGACAGGGTCGTAGTCCACAGTGATCAACAACAAGAACAAAAAGAAGAAAGGAAGGTAATTAAAATTAATGCCGCGTACAAGTGTAAGGTTGTCAGAATTCTTCCTCCTAATGAGATAATAAAACCTTGTTTCGAATTCAAGATTCAGGTCTTCTCTAGTGAGACTGGTGAGTGGAGAGAATCACTAGTGGCATGTCCACAAGGCTTTATTTATAACCAACTCGGGACTGTATCTGTCTGTGCTACCAATGGCATGCTATATTGGAATAATGCTGACTATGGTGATCTTCTCGTGCTGGGACCGTTGATCAACAACAAGAGTACTACTACTACTGCCAATGGTGATTCTGGCTATCAATTTCATGTTATTAAATATGTTCAGGAAGATGATGTTCCTTATCCTCGTCAGCCATTTTCACCTTATCACCTTGGCGGGCAGCAGGGACATCTGCTGTTGGTGCATACAGTGGCGAATGGATTCCCCAACATGGGCGCTAGGCTATTCATTTCGGAGTTGGATCAAGAAAGGGGTGGAGAACTCTGTCGTCGGAGGACTTATAATATACTGGACAAAGAATTTCTTGGTTTAGAGACTGGGGTGTCTTGTATAGTTCCTACAATATCCGATCCCATGCCGGATAGGAATACTGTGATCAACGGGAGTGAGGAAGAAGGTGCGGCGCTCAGATATATAGCAAGATCAAAAGTGAAAAAAGTGAAGAAAACCAAAGATGTGGATGGTGTTGTGAATGGAGAGGAGGGTGTGGGTTTTCAAGCTCCAAGGTTGAGTGGTAAAGAGCATGGCATTGATGCGGAGAAGGGTGGTGCGACAAAGAGGTTCGAGGCTGTGGATGCAGCTAATGCTACTGAGGAAGTGCGTGTTTCAAATTCCAATTCGTCCGAGGAATCAAGAGAAACCACCACACGAGAAATTATTCACCATGCTTTTGGAAACATGCAAATATTGCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

403

Amino Acids

45.24

Weight (kDa)

7.09

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	450, 795
AasI	GACNNNNNNGTC	1 cut(s)	835
AccII	CGCG	1 cut(s)	311
AciI	CCGC	5 cut(s)	96, 309, 669, 914, 1049
AclWI	GGATC	2 cut(s)	762, 857
AcsI	RAATTY	4 cut(s)	333, 371, 812, 1123
AfaI	GTAC	2 cut(s)	314, 559
AfiI	CCNNNNNNNGG	2 cut(s)	724, 725
AflII	CTTAAG	1 cut(s)	1205
AgsI	TTSAA	4 cut(s)	28, 376, 1010, 1122
AhlI	ACTAGT	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	4 cut(s)	59, 164, 1013, 1094
AluI	AGCT	4 cut(s)	59, 164, 1013, 1094
Alw26I	GTCTC	2 cut(s)	392, 821
AlwI	GGATC	2 cut(s)	762, 857
Ama87I	CYCGRG	1 cut(s)	458
ApeKI	GCWGC	3 cut(s)	84, 673, 1091
ApoI	RAATTY	4 cut(s)	333, 371, 812, 1123
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	2 cut(s)	713, 1170
AspLEI	GCGC	2 cut(s)	731, 919
AspS9I	GGNCC	2 cut(s)	132, 536
AsuHPI	GGTGA	6 cut(s)	416, 530, 590, 645, 653, 1166
AsuII	TTCGAA	1 cut(s)	369
AsuNHI	GCTAGC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	132, 536
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	2 cut(s)	527, 1161
BbsI	GAAGAC	2 cut(s)	243, 379
BbvI	GCAGC	3 cut(s)	71, 685, 1103
BccI	CCATC	1 cut(s)	968
BciT130I	CCWGG	1 cut(s)	174
BclI	TGATCA	3 cut(s)	259, 543, 888
BcoDI	GTCTC	2 cut(s)	392, 821
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	4 cut(s)	56, 393, 422, 732
BfoI	RGCGCY	2 cut(s)	732, 920
BfrI	CTTAAG	1 cut(s)	1205
BisI	GCNGC	5 cut(s)	85, 309, 674, 915, 1092
BlsI	GCNGC	5 cut(s)	86, 310, 675, 916, 1093
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	2 cut(s)	132, 536
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	132, 536
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	2 cut(s)	1036, 1078
BmtI	GCTAGC	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	243, 379
Bpu14I	TTCGAA	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	17
BsaJI	CCNNGG	5 cut(s)	128, 172, 664, 1016, 1137
Bsc4I	CCNNNNNNNGG	2 cut(s)	724, 725
Bse1I	ACTGG	4 cut(s)	147, 406, 807, 835
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	5 cut(s)	128, 172, 664, 1016, 1137
BseGI	GGATG	2 cut(s)	979, 1093
BseLI	CCNNNNNNNGG	2 cut(s)	724, 725
BseMII	CTCAG	3 cut(s)	212, 934, 1095
BseNI	ACTGG	4 cut(s)	147, 406, 807, 835
BseRI	GAGGAG	1 cut(s)	1007
BseXI	GCAGC	3 cut(s)	71, 685, 1103
BseYI	CCCAGC	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	872
BslFI	GGGAC	3 cut(s)	475, 549, 693
BslI	CCNNNNNNNGG	2 cut(s)	724, 725
BsmAI	GTCTC	2 cut(s)	392, 821
BsmFI	GGGAC	3 cut(s)	475, 549, 693
BsoBI	CYCGRG	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	7 cut(s)	259, 520, 543, 754, 862, 888, 935
BspACI	CCGC	5 cut(s)	96, 309, 669, 914, 1049
BspCNI	CTCAG	3 cut(s)	211, 933, 1096
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	537
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	2 cut(s)	762, 857
BspT104I	TTCGAA	1 cut(s)	369
BspTI	CTTAAG	1 cut(s)	1205
BsrI	ACTGG	4 cut(s)	147, 406, 807, 835
BssECI	CCNNGG	5 cut(s)	128, 172, 664, 1016, 1137
BssMI	GATC	7 cut(s)	259, 520, 543, 754, 862, 888, 935
BssSI	CACGAG	2 cut(s)	527, 1161
BssT1I	CCWWGG	2 cut(s)	664, 1016
Bst2BI	CACGAG	2 cut(s)	527, 1161
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	6 cut(s)	91, 257, 466, 540, 703, 886
BstAFI	CTTAAG	1 cut(s)	1205
BstAPI	GCANNNNNTGC	2 cut(s)	1097, 1201
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	57, 491, 671
BstDEI	CTNAG	3 cut(s)	198, 920, 1104
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	979, 1093
BstFNI	CGCG	1 cut(s)	311
BstH2I	RGCGCY	2 cut(s)	732, 920
BstHHI	GCGC	2 cut(s)	731, 919
BstKTI	GATC	7 cut(s)	262, 523, 546, 757, 865, 891, 938
BstMAI	GTCTC	2 cut(s)	392, 821
BstMBI	GATC	7 cut(s)	259, 520, 543, 754, 862, 888, 935
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 694, 1088, 1097, 1201
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	3 cut(s)	432, 493, 1195
BstSCI	CCNGG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	71, 685, 1103
BstV2I	GAAGAC	2 cut(s)	243, 379
BstXI	CCANNNNNNTGG	3 cut(s)	142, 970, 1184
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	979, 1093
BtsIMutI	CAGTG	2 cut(s)	262, 708
Cac8I	GCNNGC	3 cut(s)	57, 491, 671
CfoI	GCGC	2 cut(s)	731, 919
Cfr13I	GGNCC	2 cut(s)	132, 536
Csp6I	GTAC	2 cut(s)	313, 558
CviQI	GTAC	2 cut(s)	313, 558
DdeI	CTNAG	3 cut(s)	198, 920, 1104
DpnI	GATC	7 cut(s)	261, 522, 545, 756, 864, 890, 937
DpnII	GATC	7 cut(s)	259, 520, 543, 754, 862, 888, 935
DrdI	GACNNNNNNGTC	1 cut(s)	835
DseDI	GACNNNNNNGTC	1 cut(s)	835
Eco130I	CCWWGG	2 cut(s)	664, 1016
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	132, 536
Eco88I	CYCGRG	1 cut(s)	458
EcoRI	GAATTC	2 cut(s)	333, 371
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	664, 1016
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	664, 1016
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FaqI	GGGAC	3 cut(s)	475, 549, 693
FauI	CCCGC	1 cut(s)	662
FbaI	TGATCA	3 cut(s)	259, 543, 888
Fnu4HI	GCNGC	5 cut(s)	85, 309, 674, 915, 1092
FokI	GGATG	2 cut(s)	986, 1100
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	5 cut(s)	85, 309, 674, 915, 1092
FspBI	CTAG	4 cut(s)	56, 393, 422, 732
GlaI	GCGC	2 cut(s)	730, 918
GluI	GCNGC	5 cut(s)	85, 309, 674, 915, 1092
GsaI	CCCAGC	1 cut(s)	536
HaeII	RGCGCY	2 cut(s)	732, 920
HapII	CCGG	1 cut(s)	872
HhaI	GCGC	2 cut(s)	731, 919
Hin6I	GCGC	2 cut(s)	729, 917
HinP1I	GCGC	2 cut(s)	729, 917
HinfI	GANTC	7 cut(s)	194, 210, 379, 416, 581, 714, 1142
HpaII	CCGG	1 cut(s)	872
HphI	GGTGA	6 cut(s)	416, 530, 590, 645, 653, 1166
Hpy166II	GTNNAC	2 cut(s)	253, 434
Hpy188I	TCNGA	6 cut(s)	332, 748, 786, 862, 923, 1138
Hpy188III	TCNNGA	6 cut(s)	34, 376, 460, 617, 758, 1146
Hpy8I	GTNNAC	2 cut(s)	253, 434
Hpy99I	CGWCG	1 cut(s)	786
HpyAV	CCTTC	3 cut(s)	283, 902, 1048
HpyCH4III	ACNGT	6 cut(s)	91, 257, 466, 540, 703, 886
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	6 cut(s)	87, 123, 139, 697, 1091, 1195
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 694, 1088, 1097, 1201
HpyF3I	CTNAG	3 cut(s)	198, 920, 1104
HpySE526I	ACGT	1 cut(s)	117
HspAI	GCGC	2 cut(s)	729, 917
Ksp22I	TGATCA	3 cut(s)	259, 543, 888
Kzo9I	GATC	7 cut(s)	259, 520, 543, 754, 862, 888, 935
LmnI	GCTCC	1 cut(s)	1018
Lsp1109I	GCAGC	3 cut(s)	71, 685, 1103
LweI	GCATC	2 cut(s)	1036, 1078
MaeI	CTAG	4 cut(s)	56, 393, 422, 732
MaeII	ACGT	1 cut(s)	117
MalI	GATC	7 cut(s)	261, 522, 545, 756, 864, 890, 937
MboI	GATC	7 cut(s)	259, 520, 543, 754, 862, 888, 935
MhlI	GDGCHC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	732, 764
MroXI	GAANNNNTTC	2 cut(s)	713, 1170
MseI	TTAA	5 cut(s)	14, 297, 303, 606, 1206
MspA1I	CMGCKG	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	1205
MspI	CCGG	1 cut(s)	872
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	5 cut(s)	93, 694, 1088, 1097, 1201
NdeII	GATC	7 cut(s)	259, 520, 543, 754, 862, 888, 935
NheI	GCTAGC	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	537
NspI	RCATGY	3 cut(s)	432, 493, 1195
NspV	TTCGAA	1 cut(s)	369
PaeI	GCATGC	1 cut(s)	493
PdmI	GAANNNNTTC	2 cut(s)	713, 1170
PfeI	GAWTC	6 cut(s)	210, 379, 416, 581, 714, 1142
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	5 cut(s)	86, 310, 675, 916, 1093
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	303
PsiI	TTATAA	2 cut(s)	450, 795
Psp6I	CCWGG	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	2 cut(s)	132, 536
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	314, 559
RsaNI	GTAC	2 cut(s)	313, 558
SaqAI	TTAA	5 cut(s)	14, 297, 303, 606, 1206
SatI	GCNGC	5 cut(s)	85, 309, 674, 915, 1092
Sau3AI	GATC	7 cut(s)	259, 520, 543, 754, 862, 888, 935
Sau96I	GGNCC	2 cut(s)	132, 536
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	1036, 1078
SfuI	TTCGAA	1 cut(s)	369
SinI	GGWCC	2 cut(s)	132, 536
SmlI	CTYRAG	2 cut(s)	32, 1205
SmoI	CTYRAG	2 cut(s)	32, 1205
SpeI	ACTAGT	1 cut(s)	421
SphI	GCATGC	1 cut(s)	493
SsiI	CCGC	5 cut(s)	96, 309, 669, 914, 1049
SspI	AATATT	1 cut(s)	1200
SspMI	CTAG	4 cut(s)	56, 393, 422, 732
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	664, 1016
TaaI	ACNGT	6 cut(s)	91, 257, 466, 540, 703, 886
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	3 cut(s)	192, 369, 1077
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	2 cut(s)	311, 917
TfiI	GAWTC	6 cut(s)	210, 379, 416, 581, 714, 1142
Tru1I	TTAA	5 cut(s)	14, 297, 303, 606, 1206
Tru9I	TTAA	5 cut(s)	14, 297, 303, 606, 1206
TscAI	CASTG	2 cut(s)	262, 708
TseI	GCWGC	3 cut(s)	84, 673, 1091
TspDTI	ATGAA	4 cut(s)	137, 202, 587, 730
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	2 cut(s)	262, 708
Tth111I	GACNNNGTC	1 cut(s)	242
Vha464I	CTTAAG	1 cut(s)	1205
VpaK11BI	GGWCC	2 cut(s)	132, 536
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	4 cut(s)	333, 371, 812, 1123
XceI	RCATGY	3 cut(s)	432, 493, 1195
XmnI	GAANNNNTTC	2 cut(s)	713, 1170
XspI	CTAG	4 cut(s)	56, 393, 422, 732
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.