TONNEAU 1a-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g14320 |
| rosa_chinensis | RchiOBHm_Chr2g0140211 |
| rosa_samantha | Rh1BG163300 Rh1DG194100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 218 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AgsI | TTSAA | 5 cut(s) | 130, 206, 217, 232, 356 |
| AjiI | CACGTC | 1 cut(s) | 199 |
| AluBI | AGCT | 4 cut(s) | 122, 180, 352, 391 |
| AluI | AGCT | 4 cut(s) | 122, 180, 352, 391 |
| Ama87I | CYCGRG | 1 cut(s) | 89 |
| ApoI | RAATTY | 1 cut(s) | 218 |
| AspLEI | GCGC | 1 cut(s) | 58 |
| AspS9I | GGNCC | 1 cut(s) | 272 |
| AvaI | CYCGRG | 1 cut(s) | 89 |
| AvaII | GGWCC | 1 cut(s) | 272 |
| AxyI | CCTNAGG | 1 cut(s) | 335 |
| BceAI | ACGGC | 1 cut(s) | 42 |
| BfaI | CTAG | 1 cut(s) | 47 |
| BfmI | CTRYAG | 2 cut(s) | 288, 309 |
| Bme18I | GGWCC | 1 cut(s) | 272 |
| BmeT110I | CYCGRG | 1 cut(s) | 89 |
| BmgBI | CACGTC | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 1 cut(s) | 272 |
| BmiI | GGNNCC | 1 cut(s) | 273 |
| BmrI | ACTGGG | 1 cut(s) | 61 |
| BmuI | ACTGGG | 1 cut(s) | 61 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| Bse1I | ACTGG | 1 cut(s) | 56 |
| Bse21I | CCTNAGG | 1 cut(s) | 335 |
| Bse3DI | GCAATG | 1 cut(s) | 368 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseMI | GCAATG | 1 cut(s) | 368 |
| BseMII | CTCAG | 2 cut(s) | 114, 326 |
| BseNI | ACTGG | 1 cut(s) | 56 |
| BsiHKCI | CYCGRG | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BsoBI | CYCGRG | 1 cut(s) | 89 |
| Bsp143I | GATC | 1 cut(s) | 157 |
| BspCNI | CTCAG | 2 cut(s) | 115, 327 |
| BspLI | GGNNCC | 1 cut(s) | 273 |
| BsrDI | GCAATG | 1 cut(s) | 368 |
| BsrI | ACTGG | 1 cut(s) | 56 |
| BssMI | GATC | 1 cut(s) | 157 |
| Bst4CI | ACNGT | 1 cut(s) | 322 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstC8I | GCNNGC | 1 cut(s) | 393 |
| BstDEI | CTNAG | 2 cut(s) | 123, 335 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstHHI | GCGC | 1 cut(s) | 58 |
| BstKTI | GATC | 1 cut(s) | 160 |
| BstMBI | GATC | 1 cut(s) | 157 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 358 |
| BstSFI | CTRYAG | 2 cut(s) | 288, 309 |
| Bsu36I | CCTNAGG | 1 cut(s) | 335 |
| BtrI | CACGTC | 1 cut(s) | 199 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 2 cut(s) | 29, 327 |
| Cac8I | GCNNGC | 1 cut(s) | 393 |
| CfoI | GCGC | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 1 cut(s) | 272 |
| CviAII | CATG | 1 cut(s) | 279 |
| CviJI | RGCY | 6 cut(s) | 88, 122, 180, 287, 352, 391 |
| CviKI_1 | RGCY | 6 cut(s) | 88, 122, 180, 287, 352, 391 |
| DdeI | CTNAG | 2 cut(s) | 123, 335 |
| DpnI | GATC | 1 cut(s) | 159 |
| DpnII | GATC | 1 cut(s) | 157 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco47I | GGWCC | 1 cut(s) | 272 |
| Eco81I | CCTNAGG | 1 cut(s) | 335 |
| Eco88I | CYCGRG | 1 cut(s) | 89 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| FaeI | CATG | 1 cut(s) | 282 |
| FaiI | YATR | 7 cut(s) | 11, 37, 69, 156, 280, 311, 317 |
| FatI | CATG | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 352 |
| FspBI | CTAG | 1 cut(s) | 47 |
| GlaI | GCGC | 1 cut(s) | 57 |
| HhaI | GCGC | 1 cut(s) | 58 |
| Hin1II | CATG | 1 cut(s) | 282 |
| Hin6I | GCGC | 1 cut(s) | 56 |
| HinP1I | GCGC | 1 cut(s) | 56 |
| HincII | GTYRAC | 1 cut(s) | 24 |
| HindII | GTYRAC | 1 cut(s) | 24 |
| HinfI | GANTC | 1 cut(s) | 110 |
| Hpy166II | GTNNAC | 2 cut(s) | 24, 82 |
| Hpy188I | TCNGA | 1 cut(s) | 162 |
| Hpy188III | TCNNGA | 2 cut(s) | 214, 334 |
| Hpy8I | GTNNAC | 2 cut(s) | 24, 82 |
| HpyAV | CCTTC | 3 cut(s) | 9, 124, 200 |
| HpyCH4III | ACNGT | 1 cut(s) | 322 |
| HpyCH4IV | ACGT | 1 cut(s) | 198 |
| HpyCH4V | TGCA | 2 cut(s) | 103, 361 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 358 |
| HpyF3I | CTNAG | 2 cut(s) | 123, 335 |
| HpySE526I | ACGT | 1 cut(s) | 198 |
| Hsp92II | CATG | 1 cut(s) | 282 |
| HspAI | GCGC | 1 cut(s) | 56 |
| Kzo9I | GATC | 1 cut(s) | 157 |
| LpnPI | CCDG | 5 cut(s) | 37, 98, 269, 276, 347 |
| MaeI | CTAG | 1 cut(s) | 47 |
| MaeII | ACGT | 1 cut(s) | 198 |
| MalI | GATC | 1 cut(s) | 159 |
| MboI | GATC | 1 cut(s) | 157 |
| MboII | GAAGA | 1 cut(s) | 275 |
| MfeI | CAATTG | 1 cut(s) | 376 |
| MluCI | AATT | 3 cut(s) | 97, 218, 376 |
| MnlI | CCTC | 4 cut(s) | 217, 259, 285, 330 |
| MslI | CAYNNNNRTG | 1 cut(s) | 34 |
| MunI | CAATTG | 1 cut(s) | 376 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 358 |
| NdeII | GATC | 1 cut(s) | 157 |
| NlaIII | CATG | 1 cut(s) | 282 |
| NlaIV | GGNNCC | 1 cut(s) | 273 |
| PfeI | GAWTC | 1 cut(s) | 110 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| PspN4I | GGNNCC | 1 cut(s) | 273 |
| PspPI | GGNCC | 1 cut(s) | 272 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| RseI | CAYNNNNRTG | 1 cut(s) | 34 |
| Sau3AI | GATC | 1 cut(s) | 157 |
| Sau96I | GGNCC | 1 cut(s) | 272 |
| SfcI | CTRYAG | 2 cut(s) | 288, 309 |
| SinI | GGWCC | 1 cut(s) | 272 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 34 |
| Sse9I | AATT | 3 cut(s) | 97, 218, 376 |
| SspI | AATATT | 1 cut(s) | 252 |
| SspMI | CTAG | 1 cut(s) | 47 |
| TaaI | ACNGT | 1 cut(s) | 322 |
| TaiI | ACGT | 1 cut(s) | 201 |
| TaqI | TCGA | 2 cut(s) | 261, 348 |
| TasI | AATT | 3 cut(s) | 97, 218, 376 |
| TfiI | GAWTC | 1 cut(s) | 110 |
| TscAI | CASTG | 2 cut(s) | 36, 327 |
| TspDTI | ATGAA | 1 cut(s) | 341 |
| TspRI | CASTG | 2 cut(s) | 36, 327 |
| VpaK11BI | GGWCC | 1 cut(s) | 272 |
| XapI | RAATTY | 1 cut(s) | 218 |
| XspI | CTAG | 1 cut(s) | 47 |