Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0022523

Physical Location & Seq

Genomic Coordinates Reverse (-)

38409141 .. 38414132

Gene Structure 4992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG194100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACTATATCTCGATGTTATATGCTTCACGCCAGCCCTAGCGCCGGCTTCAACACGAATGGAGAGGCAGTCTCGCAGACCAAGGGGTTGGTCATTCCGGTTTCCCACGAAGGATTGAAATCTGGTGGTTGGTTTGTGAATGGGGAGCTGTTGGTTTCTCTCTTCCTCCCTTCTGCCCAAAAGGCTGAGCTGAGAGCAAGTGTGTTCGAGGCAATTGAAGAGGAGGACAAGGTCATTGAGAAAGATGAAGGCTTGCCTCCGGCGCTATTGGGTAGCTGCAACGATCGTGCTAAGCAGCTCCATGCTTCTCCTTCGGGAAGGTTGCTTACGGCATTGATATGTGAATACTTAGACTGGGCGCAGCTGAGCCACACGCTAAAAGTTTATCTGCCCGAGTGTAATTTGCAAAAGGATTCTTGGAAATTTGAGTTGAAGGACTTCAGTAACAAGAACGGATATGACCTTAACAGAAATGGGGATGGTGGTCCCTTGCAACGATCGTGCTTGAAGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030865 GO:0030981 GO:0032506 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:0071944 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH_2

Protein Analysis

172

Amino Acids

18.97

Weight (kDa)

5.58

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_2	PF16045	109 - 135	5.6e-13	LisH

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022523)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g14320
rosa_chinensis	RchiOBHm_Chr2g0140211
rosa_samantha	Rh1BG163300 Rh1DG194100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	52, 118, 218, 433, 508
AluBI	AGCT	5 cut(s)	148, 190, 276, 298, 364
AluI	AGCT	5 cut(s)	148, 190, 276, 298, 364
Alw26I	GTCTC	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	276, 295, 361
ApoI	RAATTY	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	3 cut(s)	44, 265, 361
AspS9I	GGNCC	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	485
BarI	GAAGNNNNNNTAC	2 cut(s)	310, 342
BbvI	GCAGC	3 cut(s)	263, 307, 373
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	39
BfoI	RGCGCY	2 cut(s)	45, 266
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	3 cut(s)	277, 296, 362
BlpI	GCTNAGC	3 cut(s)	186, 291, 365
BlsI	GCNGC	3 cut(s)	278, 297, 363
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	487
BmrI	ACTGGG	1 cut(s)	364
BmuI	ACTGGG	1 cut(s)	364
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
Bpu1102I	GCTNAGC	3 cut(s)	186, 291, 365
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	3 cut(s)	177, 182, 356
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	263, 307, 373
Bsh1285I	CGRYCG	2 cut(s)	286, 500
BsiEI	CGRYCG	2 cut(s)	286, 500
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	45, 98, 260
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	471
BsoBI	CYCGRG	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	283, 497
Bsp1720I	GCTNAGC	3 cut(s)	186, 291, 365
BspCNI	CTCAG	3 cut(s)	178, 183, 357
BspLI	GGNNCC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	283, 497
BssT1I	CCWWGG	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	167, 213
BstC8I	GCNNGC	3 cut(s)	34, 46, 254
BstDEI	CTNAG	5 cut(s)	186, 191, 291, 349, 365
BstF5I	GGATG	1 cut(s)	484
BstH2I	RGCGCY	2 cut(s)	45, 266
BstHHI	GCGC	3 cut(s)	44, 265, 361
BstKTI	GATC	2 cut(s)	286, 500
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	283, 497
BstMCI	CGRYCG	2 cut(s)	286, 500
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 262
BstV1I	GCAGC	3 cut(s)	263, 307, 373
BstXI	CCANNNNNNTGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	34, 46, 254
CfoI	GCGC	3 cut(s)	44, 265, 361
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	485
CviAII	CATG	1 cut(s)	302
DdeI	CTNAG	5 cut(s)	186, 191, 291, 349, 365
DpnI	GATC	2 cut(s)	285, 499
DpnII	GATC	2 cut(s)	283, 497
Eam1104I	CTCTTC	2 cut(s)	167, 213
EarI	CTCTTC	2 cut(s)	167, 213
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	305
FaiI	YATR	6 cut(s)	8, 21, 23, 303, 340, 459
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	277, 296, 362
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	3 cut(s)	277, 296, 362
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	3 cut(s)	43, 264, 360
GluI	GCNGC	3 cut(s)	277, 296, 362
HaeII	RGCGCY	2 cut(s)	45, 266
HapII	CCGG	3 cut(s)	45, 98, 260
HhaI	GCGC	3 cut(s)	44, 265, 361
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	3 cut(s)	42, 263, 359
HinP1I	GCGC	3 cut(s)	42, 263, 359
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	3 cut(s)	45, 98, 260
Hpy188III	TCNNGA	2 cut(s)	12, 315
HpyAV	CCTTC	7 cut(s)	104, 180, 242, 312, 321, 427, 502
HpyCH4V	TGCA	3 cut(s)	279, 406, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 262
HpyF3I	CTNAG	5 cut(s)	186, 191, 291, 349, 365
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	3 cut(s)	42, 263, 359
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	283, 497
LmnI	GCTCC	2 cut(s)	145, 303
LpnPI	CCDG	6 cut(s)	46, 58, 108, 111, 273, 340
Lsp1109I	GCAGC	3 cut(s)	263, 307, 373
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	2 cut(s)	285, 499
MboI	GATC	2 cut(s)	283, 497
MboII	GAAGA	2 cut(s)	154, 230
MfeI	CAATTG	1 cut(s)	213
MluCI	AATT	3 cut(s)	213, 400, 422
MnlI	CCTC	6 cut(s)	58, 176, 202, 214, 217, 267
MroNI	GCCGGC	1 cut(s)	44
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	3 cut(s)	45, 98, 260
MunI	CAATTG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	182, 262
NaeI	GCCGGC	1 cut(s)	46
NdeII	GATC	2 cut(s)	283, 497
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	487
PdiI	GCCGGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	278, 297, 363
Ple19I	CGATCG	2 cut(s)	286, 500
PspN4I	GGNNCC	1 cut(s)	487
PspPI	GGNCC	1 cut(s)	485
PsyI	GACNNNGTC	1 cut(s)	230
PvuI	CGATCG	2 cut(s)	286, 500
PvuII	CAGCTG	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	3 cut(s)	277, 296, 362
Sau3AI	GATC	2 cut(s)	283, 497
Sau96I	GGNCC	1 cut(s)	485
SetI	ASST	8 cut(s)	150, 192, 234, 278, 300, 323, 366, 465
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	337
Sse9I	AATT	3 cut(s)	213, 400, 422
SspMI	CTAG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	81
TaqI	TCGA	2 cut(s)	13, 207
TasI	AATT	3 cut(s)	213, 400, 422
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TseI	GCWGC	3 cut(s)	276, 295, 361
TspDTI	ATGAA	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	468
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.